Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0019753

Physical Location & Seq

Genomic Coordinates Reverse (-)

20607155 .. 20607547

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG220800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGCATTCAGCACAGGTCATAGAGCAGCAAGCAGCTGTGCATCGTTGTACTTCTGTGGTGGACTTCATGGAGGAAAAACCTATGCCTAATCCAGCAATGGTTAATGATGAAGCAATATACGAACACGTGAAGAAAGTCGGTGAGGTCCTTGTTGGGAAACCTAATGTGCAGCTTATGCCAATGACCATGGGTGGAGAAGATTTTAGCTTCTTTGCTGAGAAGATTCCAGCTGCGATTTTTGTTGTTGGGATAAGGAATGAGACTCTGAAAGCAGACAAGCACTTGCACTCGCCCAACTTCTTTATCGACGAGGAGGCTCTTCCAATAGGAGCTGCTCTTAATGCTGCAGTTACAATTTCATACTTGGATGGCAATGATGTGAAGACTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009850 GO:0009987 GO:0010178 GO:0010210 GO:0010211 GO:0010817 GO:0012505 GO:0016787 GO:0016810 GO:0042445 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

130

Amino Acids

14.34

Weight (kDa)

4.95

Isoelectric Point (pI)

26.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M20	PF01546	29 - 116	1.2e-11	Peptidase family M20/M25/M40

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0019753)

Species	Orthologous Gene IDs
malus_domestica	MD14G1033200.v1.1
rosa_multiflora	Rmu_sc0003093.1_g000016
rosa_roxburghii	Rroxscaffold_1G00013400 Rroxscaffold_2G00105580 Rroxscaffold_3G00232690
rosa_samantha	Rh3CG220800 Rh3DG221700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcvI	CACGTG	1 cut(s)	127
AfaI	GTAC	1 cut(s)	49
AflIII	ACRYGT	1 cut(s)	124
AluBI	AGCT	5 cut(s)	35, 172, 207, 230, 332
AluI	AGCT	5 cut(s)	35, 172, 207, 230, 332
Alw26I	GTCTC	1 cut(s)	254
ApeKI	GCWGC	6 cut(s)	25, 32, 169, 230, 332, 344
AspS9I	GGNCC	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	145
BbrPI	CACGTG	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	389
BbvI	GCAGC	6 cut(s)	37, 44, 181, 217, 319, 331
BccI	CCATC	1 cut(s)	362
BcoDI	GTCTC	1 cut(s)	254
BfmI	CTRYAG	1 cut(s)	345
BisI	GCNGC	6 cut(s)	26, 33, 170, 231, 333, 345
BlsI	GCNGC	6 cut(s)	27, 34, 171, 232, 334, 346
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	145
BmsI	GCATC	1 cut(s)	49
BpiI	GAAGAC	1 cut(s)	389
BsaAI	YACGTR	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	186
Bse3DI	GCAATG	2 cut(s)	102, 379
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	1 cut(s)	373
BseMI	GCAATG	2 cut(s)	102, 379
BseMII	CTCAG	1 cut(s)	207
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	6 cut(s)	37, 44, 181, 217, 319, 331
BsgI	GTGCAG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	4
Bsp19I	CCATGG	1 cut(s)	186
BspCNI	CTCAG	1 cut(s)	208
BspMAI	CTGCAG	1 cut(s)	349
BspQI	GCTCTTC	1 cut(s)	324
BsrDI	GCAATG	2 cut(s)	102, 379
BssECI	CCNNGG	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	186
Bst6I	CTCTTC	1 cut(s)	324
BstAPI	GCANNNNNTGC	1 cut(s)	175
BstBAI	YACGTR	1 cut(s)	127
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	216
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	373
BstMAI	GTCTC	1 cut(s)	254
BstMWI	GCNNNNNNNGC	2 cut(s)	175, 341
BstSFI	CTRYAG	1 cut(s)	345
BstV1I	GCAGC	6 cut(s)	37, 44, 181, 217, 319, 331
BstV2I	GAAGAC	1 cut(s)	389
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	373
Cac8I	GCNNGC	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	48
CviAII	CATG	2 cut(s)	67, 187
CviJI	RGCY	6 cut(s)	35, 172, 207, 230, 317, 332
CviKI_1	RGCY	6 cut(s)	35, 172, 207, 230, 317, 332
CviQI	GTAC	1 cut(s)	48
DdeI	CTNAG	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco130I	CCWWGG	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	145
Eco72I	CACGTG	1 cut(s)	127
EcoO109I	RGGNCCY	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	186
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	2 cut(s)	70, 190
FaiI	YATR	7 cut(s)	20, 68, 83, 118, 176, 188, 361
FatI	CATG	2 cut(s)	66, 186
Fnu4HI	GCNGC	6 cut(s)	26, 33, 170, 231, 333, 345
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	6 cut(s)	26, 33, 170, 231, 333, 345
GluI	GCNGC	6 cut(s)	26, 33, 170, 231, 333, 345
Hin1II	CATG	2 cut(s)	70, 190
HinfI	GANTC	2 cut(s)	223, 262
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	1 cut(s)	267
Hpy8I	GTNNAC	1 cut(s)	61
Hpy99I	CGWCG	1 cut(s)	311
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	5 cut(s)	4, 40, 169, 286, 347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	175, 341
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	2 cut(s)	70, 190
LguI	GCTCTTC	1 cut(s)	324
LmnI	GCTCC	1 cut(s)	329
LpnPI	CCDG	2 cut(s)	105, 240
Lsp1109I	GCAGC	6 cut(s)	37, 44, 181, 217, 319, 331
LweI	GCATC	1 cut(s)	49
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	349
MboII	GAAGA	4 cut(s)	142, 209, 232, 311
MluCI	AATT	1 cut(s)	354
MlyI	GAGTC	1 cut(s)	256
MnlI	CCTC	4 cut(s)	64, 136, 304, 307
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	102, 339
MspA1I	CMGCKG	2 cut(s)	35, 230
Mva1269I	GAATGC	1 cut(s)	4
MwoI	GCNNNNNNNGC	2 cut(s)	175, 341
NcoI	CCATGG	1 cut(s)	186
NlaIII	CATG	2 cut(s)	70, 190
NsiI	ATGCAT	1 cut(s)	6
PciSI	GCTCTTC	1 cut(s)	324
PctI	GAATGC	1 cut(s)	4
PfeI	GAWTC	1 cut(s)	223
PkrI	GCNGC	6 cut(s)	27, 34, 171, 232, 334, 346
PleI	GAGTC	1 cut(s)	256
PmaCI	CACGTG	1 cut(s)	127
PmlI	CACGTG	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	256
Ppu21I	YACGTR	1 cut(s)	127
PpuMI	RGGWCCY	1 cut(s)	145
Psp5II	RGGWCCY	1 cut(s)	145
PspCI	CACGTG	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	145
PspPPI	RGGWCCY	1 cut(s)	145
PstI	CTGCAG	1 cut(s)	349
PvuII	CAGCTG	2 cut(s)	35, 230
RsaI	GTAC	1 cut(s)	49
RsaNI	GTAC	1 cut(s)	48
SapI	GCTCTTC	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	102, 339
SatI	GCNGC	6 cut(s)	26, 33, 170, 231, 333, 345
Sau96I	GGNCC	1 cut(s)	145
SchI	GAGTC	1 cut(s)	256
SfaNI	GCATC	1 cut(s)	49
SfcI	CTRYAG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	145
Sse9I	AATT	1 cut(s)	354
StyI	CCWWGG	1 cut(s)	186
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	1 cut(s)	306
TasI	AATT	1 cut(s)	354
TatI	WGTACW	1 cut(s)	47
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	2 cut(s)	102, 339
Tru9I	TTAA	2 cut(s)	102, 339
TseI	GCWGC	6 cut(s)	25, 32, 169, 230, 332, 344
TspDTI	ATGAA	3 cut(s)	55, 123, 348
VpaK11BI	GGWCC	1 cut(s)	145
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.