Rh3DG221700

Iaa-amino acid hydrolase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
20766001 .. 20766894
894 bp
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UTR
Exon/CDS
Intron
Rh3DG221700.1

Sequence Viewer

Length: 396 bp
ATGTCTATGAGAGCAGAGGACTTCAGCTTCTATACACATCAGACGGTTACCGCATTGTTCATGATTGGGACTAAAAACAATACTTTGGGGTCGAACACTAGAGACTTACATTCACCTTTCTTGGTCATTGATGAGGAGGTACTTCCTGCTCCTAATGCTGCAGTTGCTATTTCATTCTTGGATAATACCACTGATGCAACTGATGAGTGGGTCTGTGGTGACAATGGCGGTGATGGGTTACTTAGGTCGTCGTTTCCACCATTTAATGGGTTGTTTGGGTTATTTGGGTCTGGAGTTAGTGTTTCAGAGATAGAAGGACACGACAATAGCTATAGGTTTATTGCTCAAGAAAAAGGCCAATTCTTGGAAATTGGTCTCGGTCTCTTAGATAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

131

Amino Acids

14.18

Weight (kDa)

4.24

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019753)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 266, 364
AciI CCGC 2 cut(s) 51, 228
AcuI CTGAAG 1 cut(s) 7
AfaI GTAC 1 cut(s) 141
AfiI CCNNNNNNNGG 2 cut(s) 266, 364
AluBI AGCT 3 cut(s) 27, 330, 393
AluI AGCT 3 cut(s) 27, 330, 393
Alw26I GTCTC 3 cut(s) 96, 380, 386
AoxI GGCC 1 cut(s) 355
ApeKI GCWGC 1 cut(s) 158
AsuHPI GGTGA 3 cut(s) 105, 230, 242
BbvI GCAGC 1 cut(s) 145
BccI CCATC 1 cut(s) 227
BcoDI GTCTC 3 cut(s) 96, 380, 386
BfaI CTAG 1 cut(s) 99
BfmI CTRYAG 2 cut(s) 159, 331
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
BmsI GCATC 1 cut(s) 184
BpmI CTGGAG 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 330
BsaI GGTCTC 2 cut(s) 380, 386
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 364
BseLI CCNNNNNNNGG 2 cut(s) 266, 364
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 145
BshFI GGCC 1 cut(s) 357
BslFI GGGAC 1 cut(s) 82
BslI CCNNNNNNNGG 2 cut(s) 266, 364
BsmAI GTCTC 3 cut(s) 96, 380, 386
BsmFI GGGAC 1 cut(s) 82
BsnI GGCC 1 cut(s) 357
Bso31I GGTCTC 2 cut(s) 380, 386
BspACI CCGC 2 cut(s) 51, 228
BspANI GGCC 1 cut(s) 357
BspHI TCATGA 1 cut(s) 60
BspMAI CTGCAG 1 cut(s) 163
BspTNI GGTCTC 2 cut(s) 380, 386
Bst4CI ACNGT 1 cut(s) 46
BstDEI CTNAG 2 cut(s) 242, 385
BstEII GGTNACC 1 cut(s) 46
BstMAI GTCTC 3 cut(s) 96, 380, 386
BstMWI GCNNNNNNNGC 2 cut(s) 155, 164
BstPI GGTNACC 1 cut(s) 46
BstSFI CTRYAG 2 cut(s) 159, 331
BstV1I GCAGC 1 cut(s) 145
BsuRI GGCC 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 189
CciI TCATGA 1 cut(s) 60
Csp6I GTAC 1 cut(s) 140
CviAII CATG 1 cut(s) 61
CviJI RGCY 4 cut(s) 27, 330, 357, 393
CviKI_1 RGCY 4 cut(s) 27, 330, 357, 393
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 2 cut(s) 242, 385
Eco31I GGTCTC 2 cut(s) 380, 386
Eco57I CTGAAG 1 cut(s) 7
Eco91I GGTNACC 1 cut(s) 46
EcoO65I GGTNACC 1 cut(s) 46
FaeI CATG 1 cut(s) 64
FaiI YATR 4 cut(s) 8, 33, 62, 333
FaqI GGGAC 1 cut(s) 82
FatI CATG 1 cut(s) 60
Fnu4HI GCNGC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 159
FspBI CTAG 1 cut(s) 99
GluI GCNGC 1 cut(s) 159
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 1 cut(s) 357
Hin1II CATG 1 cut(s) 64
HphI GGTGA 3 cut(s) 105, 230, 242
Hpy188I TCNGA 2 cut(s) 42, 307
Hpy188III TCNNGA 3 cut(s) 61, 291, 347
Hpy99I CGWCG 1 cut(s) 253
HpyAV CCTTC 1 cut(s) 308
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4V TGCA 2 cut(s) 161, 197
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 164
HpyF3I CTNAG 2 cut(s) 242, 385
Hsp92II CATG 1 cut(s) 64
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 2 cut(s) 159, 276
Lsp1109I GCAGC 1 cut(s) 145
LweI GCATC 1 cut(s) 184
MaeI CTAG 1 cut(s) 99
MaeIII GTNAC 3 cut(s) 46, 218, 237
MluCI AATT 2 cut(s) 359, 369
MnlI CCTC 3 cut(s) 10, 127, 130
MseI TTAA 1 cut(s) 264
MwoI GCNNNNNNNGC 2 cut(s) 155, 164
NlaIII CATG 1 cut(s) 64
NmuCI GTSAC 1 cut(s) 218
PagI TCATGA 1 cut(s) 60
PflMI CCANNNNNTGG 2 cut(s) 266, 364
PkrI GCNGC 1 cut(s) 160
PspEI GGTNACC 1 cut(s) 46
PstI CTGCAG 1 cut(s) 163
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 1 cut(s) 159
SetI ASST 7 cut(s) 29, 118, 141, 248, 332, 338, 395
SfaNI GCATC 1 cut(s) 184
SfcI CTRYAG 2 cut(s) 159, 331
SmlI CTYRAG 1 cut(s) 345
SmoI CTYRAG 1 cut(s) 345
Sse9I AATT 2 cut(s) 359, 369
SsiI CCGC 2 cut(s) 51, 228
SspMI CTAG 1 cut(s) 99
TaaI ACNGT 1 cut(s) 46
TaqI TCGA 1 cut(s) 92
TaqII GACCGA 1 cut(s) 368
TasI AATT 2 cut(s) 359, 369
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 1 cut(s) 218
TseI GCWGC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 2 cut(s) 49, 162
TspRI CASTG 1 cut(s) 196
Van91I CCANNNNNTGG 2 cut(s) 266, 364
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.