Rroxscaffold_2G00107600

Phosphopantetheine attachment site

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0021646
Physical Location & Seq
Reverse (-)
31566273 .. 31567690
1418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00107600.1

Sequence Viewer

Length: 495 bp
ATGGCTTGGAATCTCAATATAGAAGAACATAAAACTGAAACGATGGATATGGGTGATGTTGAAAAGGATTGTGCAGTAAATTGCAATGCAGAGATACGATTCTTTGCTGATGCAGATATTTTCTTATTTTGGTCTTACGGAAATTCTGTCGACGATATGGGACCAACTGTGACAGAACTTGGAATTGAAGCTGTTAAACGTATAGGGGGAGAAGTTAAGGAGATGGTTCTCCAGTTCCTGTTTAAGTACTTTCCTTATGTTGATGGCCAAGCTATCATGAATGGATTTTATGACAAATTGGAGTATGAACTTCAAGGTGTGAGGAACAATTTTAGCTTAAAATTTATGACGAAATCATTGGTCAAGTCTAAACATGTTCCTGAGGCTGCTACTGATGAAGAGTGTGATAAAGTTTTTATGTATAATACTGATGAAAATGACTATGAAGTTTTCGACTTGAGAGTCACACAGAAAAAACAGGTTTGTTGGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AMP-binding Amino_oxidase Catalase Hexapep NAD_binding_8 PP-binding

Protein Analysis

164

Amino Acids

19.03

Weight (kDa)

4.52

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021646)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001374.1_g000002
rosa_roxburghii Rroxscaffold_2G00107600
rosa_rugosa Rorug02G0338600
rosa_samantha Rh3BG156500 Rh5AG462200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 461
AccI GTMKAC 1 cut(s) 150
AcoI YGGCCR 1 cut(s) 265
AcsI RAATTY 2 cut(s) 142, 341
AfaI GTAC 1 cut(s) 248
AflIII ACRYGT 1 cut(s) 373
AgsI TTSAA 3 cut(s) 62, 188, 314
AluBI AGCT 3 cut(s) 191, 272, 336
AluI AGCT 3 cut(s) 191, 272, 336
AlwNI CAGNNNCTG 1 cut(s) 238
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 1 cut(s) 386
ApoI RAATTY 2 cut(s) 142, 341
AspS9I GGNCC 1 cut(s) 161
AsuHPI GGTGA 1 cut(s) 65
AvaII GGWCC 1 cut(s) 161
AxyI CCTNAGG 1 cut(s) 381
BalI TGGCCA 1 cut(s) 267
BbvI GCAGC 1 cut(s) 373
BccI CCATC 3 cut(s) 37, 217, 257
BisI GCNGC 1 cut(s) 387
BlsI GCNGC 1 cut(s) 388
BmcAI AGTACT 1 cut(s) 248
Bme18I GGWCC 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 1 cut(s) 162
BmsI GCATC 1 cut(s) 100
BpmI CTGGAG 1 cut(s) 215
BpuEI CTTGAG 1 cut(s) 478
Bse1I ACTGG 1 cut(s) 232
Bse21I CCTNAGG 1 cut(s) 381
Bse3DI GCAATG 1 cut(s) 91
BseMI GCAATG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 372
BseNI ACTGG 1 cut(s) 232
BseXI GCAGC 1 cut(s) 373
BsgI GTGCAG 1 cut(s) 93
BshFI GGCC 1 cut(s) 267
BslFI GGGAC 1 cut(s) 174
BsmFI GGGAC 1 cut(s) 174
BsnI GGCC 1 cut(s) 267
BspANI GGCC 1 cut(s) 267
BspCNI CTCAG 1 cut(s) 373
BspHI TCATGA 1 cut(s) 276
BspLI GGNNCC 1 cut(s) 162
BsrDI GCAATG 1 cut(s) 91
BsrI ACTGG 1 cut(s) 232
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 393
BstDEI CTNAG 1 cut(s) 381
BstNSI RCATGY 1 cut(s) 377
BstV1I GCAGC 1 cut(s) 373
Bsu36I CCTNAGG 1 cut(s) 381
BsuRI GGCC 1 cut(s) 267
CaiI CAGNNNCTG 1 cut(s) 238
CciI TCATGA 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 247
CviAII CATG 2 cut(s) 277, 374
CviJI RGCY 6 cut(s) 5, 191, 267, 272, 336, 386
CviKI_1 RGCY 6 cut(s) 5, 191, 267, 272, 336, 386
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 1 cut(s) 381
DrdI GACNNNNNNGTC 1 cut(s) 461
DseDI GACNNNNNNGTC 1 cut(s) 461
EaeI YGGCCR 1 cut(s) 265
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
Eco47I GGWCC 1 cut(s) 161
Eco81I CCTNAGG 1 cut(s) 381
FaeI CATG 2 cut(s) 280, 377
FaqI GGGAC 1 cut(s) 174
FatI CATG 2 cut(s) 276, 373
FblI GTMKAC 1 cut(s) 150
Fnu4HI GCNGC 1 cut(s) 387
Fsp4HI GCNGC 1 cut(s) 387
GluI GCNGC 1 cut(s) 387
GsuI CTGGAG 1 cut(s) 215
HaeIII GGCC 1 cut(s) 267
Hin1II CATG 2 cut(s) 280, 377
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HinfI GANTC 3 cut(s) 10, 99, 462
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 151
Hpy188III TCNNGA 2 cut(s) 277, 380
Hpy8I GTNNAC 1 cut(s) 151
Hpy99I CGWCG 1 cut(s) 155
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 4 cut(s) 74, 84, 89, 113
HpyF3I CTNAG 1 cut(s) 381
HpySE526I ACGT 1 cut(s) 199
Hsp92II CATG 2 cut(s) 280, 377
LpnPI CCDG 4 cut(s) 245, 251, 393, 464
Lsp1109I GCAGC 1 cut(s) 373
LweI GCATC 1 cut(s) 100
MaeII ACGT 1 cut(s) 199
MaeIII GTNAC 2 cut(s) 169, 463
MboII GAAGA 2 cut(s) 35, 410
MlsI TGGCCA 1 cut(s) 267
MluCI AATT 6 cut(s) 79, 142, 183, 296, 328, 341
MluNI TGGCCA 1 cut(s) 267
MlyI GAGTC 1 cut(s) 471
MnlI CCTC 2 cut(s) 315, 376
Mox20I TGGCCA 1 cut(s) 267
MscI TGGCCA 1 cut(s) 267
MseI TTAA 4 cut(s) 195, 216, 243, 338
Msp20I TGGCCA 1 cut(s) 267
NlaIII CATG 2 cut(s) 280, 377
NlaIV GGNNCC 1 cut(s) 162
NmuCI GTSAC 2 cut(s) 169, 463
NspI RCATGY 1 cut(s) 377
PagI TCATGA 1 cut(s) 276
PciI ACATGT 1 cut(s) 373
PfeI GAWTC 2 cut(s) 10, 99
PkrI GCNGC 1 cut(s) 388
PleI GAGTC 1 cut(s) 470
PpsI GAGTC 1 cut(s) 470
PscI ACATGT 1 cut(s) 373
PspN4I GGNNCC 1 cut(s) 162
PspPI GGNCC 1 cut(s) 161
PstNI CAGNNNCTG 1 cut(s) 238
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SalI GTCGAC 1 cut(s) 149
SaqAI TTAA 4 cut(s) 195, 216, 243, 338
SatI GCNGC 1 cut(s) 387
Sau96I GGNCC 1 cut(s) 161
ScaI AGTACT 1 cut(s) 248
SchI GAGTC 1 cut(s) 471
SetI ASST 6 cut(s) 193, 202, 274, 319, 338, 483
SfaNI GCATC 1 cut(s) 100
SinI GGWCC 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 457
SmoI CTYRAG 1 cut(s) 457
Sse9I AATT 6 cut(s) 79, 142, 183, 296, 328, 341
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 1 cut(s) 202
TaqI TCGA 2 cut(s) 150, 453
TasI AATT 6 cut(s) 79, 142, 183, 296, 328, 341
TatI WGTACW 1 cut(s) 246
TfiI GAWTC 2 cut(s) 10, 99
Tru1I TTAA 4 cut(s) 195, 216, 243, 338
Tru9I TTAA 4 cut(s) 195, 216, 243, 338
TseFI GTSAC 2 cut(s) 169, 463
TseI GCWGC 1 cut(s) 386
Tsp45I GTSAC 2 cut(s) 169, 463
TspDTI ATGAA 5 cut(s) 293, 321, 411, 447, 459
TspGWI ACGGA 1 cut(s) 153
VpaK11BI GGWCC 1 cut(s) 161
XapI RAATTY 2 cut(s) 142, 341
XceI RCATGY 1 cut(s) 377
XmiI GTMKAC 1 cut(s) 150
ZrmI AGTACT 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.