Rh5AG462200

Dual specificity tyrosine-phosphorylation-regulated kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0021646
Physical Location & Seq
Reverse (-)
79085289 .. 79090977
5689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG462200.1

Sequence Viewer

Length: 384 bp
ATGTCAAGGAGAATTGGGGGTCCGAGAAGAATTGTTTCTGAGTTCATTCTCGACGAGGTTGTGGAGCCCATAGTTCCAGTAAGGGGGCTCTATGAGAAGGCCCAGGAGATATTGATGAAAGAAAGCAATGTTCAGTCTGTCATTTGCAGGACTGGATTTGAAGCAAACAAGGATCTGCCTACTGTGAAAAACCCCATGATTGCAGGCAGATATTATGTAACTAAATATCTGGGTTCAGCTGCTTTAGTAAGATTTCCCTCTAAATTTGGGTTTAATTCACTTCTTCCTTCGGCGTACAGTTTCAAAATTATGAACTTCATGCCTGTGTCATTTTTTGGTGGATTGAAAGAACGGATAAGGAATTATCATTTATCTGTGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000166 GO:0000278 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005856 GO:0005886 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008289 GO:0008360 GO:0008361 GO:0009898 GO:0009987 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0015629 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0019897 GO:0019898 GO:0022402 GO:0022603 GO:0022604 GO:0023052 GO:0030307 GO:0030427 GO:0030554 GO:0030863 GO:0030864 GO:0031234 GO:0031567 GO:0031569 GO:0032153 GO:0032155 GO:0032465 GO:0032535 GO:0032553 GO:0032555 GO:0032559 GO:0032878 GO:0032879 GO:0032880 GO:0032954 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0035091 GO:0035556 GO:0035639 GO:0035839 GO:0036094 GO:0036211 GO:0040008 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044087 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044459 GO:0044464 GO:0045786 GO:0045927 GO:0045930 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048639 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051179 GO:0051285 GO:0051286 GO:0051302 GO:0051493 GO:0051510 GO:0051512 GO:0051516 GO:0051518 GO:0051519 GO:0051641 GO:0051716 GO:0051726 GO:0060341 GO:0065007 GO:0065008 GO:0070727 GO:0070938 GO:0071342 GO:0071704 GO:0071840 GO:0071944 GO:0072395 GO:0072413 GO:0072453 GO:0072471 GO:0090066 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0099568 GO:0099738 GO:0120105 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901648 GO:1901981 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902412 GO:1902471 GO:1902749 GO:1902750 GO:1903047 GO:1903066 GO:1903067 GO:1903076 GO:1903077 GO:1903436 GO:1903505 GO:1903827 GO:1903828 GO:1904375 GO:1904376 GO:1905475 GO:1905476 GO:2000073 GO:2000769
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

127

Amino Acids

14.41

Weight (kDa)

9.88

Isoelectric Point (pI)

50.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021646)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001374.1_g000002
rosa_roxburghii Rroxscaffold_2G00107600
rosa_rugosa Rorug02G0338600
rosa_samantha Rh3BG156500 Rh5AG462200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 180
AcsI RAATTY 1 cut(s) 263
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 1 cut(s) 83
AgsI TTSAA 3 cut(s) 161, 304, 346
AjnI CCWGG 1 cut(s) 102
AluBI AGCT 1 cut(s) 239
AluI AGCT 1 cut(s) 239
AlwI GGATC 1 cut(s) 180
AoxI GGCC 1 cut(s) 99
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 1 cut(s) 263
Asp700I GAANNNNTTC 1 cut(s) 34
AspS9I GGNCC 2 cut(s) 20, 100
AvaII GGWCC 1 cut(s) 20
BanII GRGCYC 2 cut(s) 69, 90
BbvI GCAGC 1 cut(s) 226
BciT130I CCWGG 1 cut(s) 104
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
Bme1390I CCNGG 1 cut(s) 104
Bme18I GGWCC 1 cut(s) 20
BmgT120I GGNCC 2 cut(s) 20, 100
BmiI GGNNCC 2 cut(s) 21, 66
BmrFI CCNGG 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 102
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 77, 157
Bse3DI GCAATG 1 cut(s) 133
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 1 cut(s) 102
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMI GCAATG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 2 cut(s) 77, 157
BseXI GCAGC 1 cut(s) 226
BshFI GGCC 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 83
BsnI GGCC 1 cut(s) 101
Bsp1286I GDGCHC 2 cut(s) 69, 90
Bsp143I GATC 1 cut(s) 172
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 1 cut(s) 31
BspLI GGNNCC 2 cut(s) 21, 66
BspPI GGATC 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 133
BsrI ACTGG 2 cut(s) 77, 157
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 1 cut(s) 172
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 2 cut(s) 184, 299
BstC8I GCNNGC 1 cut(s) 205
BstDEI CTNAG 1 cut(s) 39
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstNI CCWGG 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 226
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BsuRI GGCC 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 205
Cfr13I GGNCC 2 cut(s) 20, 100
Csp6I GTAC 1 cut(s) 295
CviAII CATG 2 cut(s) 196, 319
CviJI RGCY 4 cut(s) 67, 88, 101, 239
CviKI_1 RGCY 4 cut(s) 67, 88, 101, 239
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 1 cut(s) 39
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
Eco24I GRGCYC 2 cut(s) 69, 90
Eco47I GGWCC 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 102
EcoT38I GRGCYC 2 cut(s) 69, 90
FaeI CATG 2 cut(s) 199, 322
FaiI YATR 6 cut(s) 71, 93, 197, 216, 311, 320
FatI CATG 2 cut(s) 195, 318
Fnu4HI GCNGC 1 cut(s) 240
FriOI GRGCYC 2 cut(s) 69, 90
Fsp4HI GCNGC 1 cut(s) 240
GluI GCNGC 1 cut(s) 240
HaeIII GGCC 1 cut(s) 101
Hin1II CATG 2 cut(s) 199, 322
Hpy188I TCNGA 2 cut(s) 24, 40
Hpy188III TCNNGA 1 cut(s) 50
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 2 cut(s) 91, 297
HpyCH4III ACNGT 2 cut(s) 184, 299
HpyCH4V TGCA 2 cut(s) 147, 203
HpyF3I CTNAG 1 cut(s) 39
Hsp92II CATG 2 cut(s) 199, 322
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 8 cut(s) 89, 90, 116, 133, 138, 189, 215, 336
Lsp1109I GCAGC 1 cut(s) 226
MaeIII GTNAC 1 cut(s) 217
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 2 cut(s) 39, 275
MflI RGATCY 1 cut(s) 172
MhlI GDGCHC 2 cut(s) 69, 90
MluCI AATT 6 cut(s) 12, 30, 263, 274, 306, 361
MnlI CCTC 2 cut(s) 49, 268
MroXI GAANNNNTTC 1 cut(s) 34
MseI TTAA 1 cut(s) 273
MslI CAYNNNNRTG 1 cut(s) 323
MspA1I CMGCKG 1 cut(s) 239
MspR9I CCNGG 1 cut(s) 104
MvaI CCWGG 1 cut(s) 104
NdeII GATC 1 cut(s) 172
NlaIII CATG 2 cut(s) 199, 322
NlaIV GGNNCC 2 cut(s) 21, 66
PdmI GAANNNNTTC 1 cut(s) 34
PkrI GCNGC 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 102
PspGI CCWGG 1 cut(s) 102
PspN4I GGNNCC 2 cut(s) 21, 66
PspPI GGNCC 2 cut(s) 20, 100
PsuI RGATCY 1 cut(s) 172
PvuII CAGCTG 1 cut(s) 239
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
RseI CAYNNNNRTG 1 cut(s) 323
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 2 cut(s) 20, 100
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 2 cut(s) 69, 90
SetI ASST 2 cut(s) 60, 241
SinI GGWCC 1 cut(s) 20
SmiMI CAYNNNNRTG 1 cut(s) 323
Sse9I AATT 6 cut(s) 12, 30, 263, 274, 306, 361
StyD4I CCNGG 1 cut(s) 102
TaaI ACNGT 2 cut(s) 184, 299
TaqI TCGA 1 cut(s) 51
TasI AATT 6 cut(s) 12, 30, 263, 274, 306, 361
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TseI GCWGC 1 cut(s) 239
TspDTI ATGAA 4 cut(s) 34, 131, 307, 326
TspGWI ACGGA 1 cut(s) 367
VpaK11BI GGWCC 1 cut(s) 20
XapI RAATTY 1 cut(s) 263
XmnI GAANNNNTTC 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.