Rroxscaffold_2G00120580

DDT domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003443
Physical Location & Seq
Forward (+)
52909115 .. 52915730
6616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00120580.1

Sequence Viewer

Length: 1392 bp
ATGGAGGAGGAAGCAAAAGATGAACCAGGAAATTGTAAAAGGAAAAAGTTAGATGGTTCAGAAATAGATCAACCAGCAGAAGAATCTATCAAATATCCAATTGATGACCTCTTGGTTCAGCCACATCCAGATGATCCAGTTTTTACAGATCGCCCTTCTCCATCTAGGGACTTTAATGTTCCAATGGAATGTTTTGGTGACCTTTTAATGGTTTGGGATTTTGTTTCATCTTTTGGTAGGCTATTGCACTTATGGTCATTTTCTCTTGAAGATTTTGAAAAAGCTATCTGCCACAAGAAGGGCAATTTGACTCTTCTTGTTGAAACTCATGCGGCTCTTCTTCGGGTGCTCATAAAGGACAACGGTGAATATGTTTTAGCTGTACAAAAACGAAGACCAAAGATTACATTAATCACTTGGACAGACTATTTGTGTGATTTCTTAGAAATGGTGAACATTCCTGAATTACGTGATCACACAGCAACTATCAAGCGGGGTCACTATGGTCTTTTAGATGCTAATGCTAAATTGGCAATCTTCCGAGAATTGATTAATCAAGCACTTGAATCAAATATTGTTAGGGAGAAGTTGGATGAAATTGTTGAACAGAGGCAAGCACTTGGGGCCTCAAGGAGGGAGGAAGCATTGGAGGAAGCCAGAAAGAAACGAGAAAAGAAAGAGCGGTTGAACGCTGAGCCAGATGTTAATCGAGGAGTCGATCTGAAGAGTGTAGGAAGTGCTGCAGCAAATGGTAATCATATAAGGCAGAACGGAGATATAGTAAAGAAAAGAAATGGTGAGATCCAATCATATAGAGAAGATCATGTATCGGATAAAAGTGAGAGCAAGCAATTGGACACCGCATCAAAACAGAATGTGGAAAGGAAAGCTCCAATGAACAATGGGAAGGATTTATCTGACAAGGACGCAAAGAAATTGCCAAGGGATGATGGAAAGGAAGTCAGGGGAAAGAGTAGCAAAGAACGGAGAGAATATTATGAGAGGGAGATGGAGAAGCGGTTTGTACGCACCGACTCCTTGGGTAAAGACAGAAATCATAACAGATATTGGTGGTTCCAGCGAGATGGTAGAGTATTTGTTGAGAGTTCTGATTCCAAGCAGTGGGGATACTATAGTAGCAAGGAAGAGCTTAGTTTGTTGATGGGGTCACTGAATTGCAAGGGTGAGAGAGAGAGGGAACTCAAAAAGCAGCTGGAAAAATTTTACAGCCGAATAAGCCTGGCTCTCGAAAAGAGATCAAAGGAATTGGCTCAAAAGATTGCATTGGAGGATGAGTCTGTGGTTCGAAGGTCTACTCGTGTGCGTGCTCCGCCAAGCAAAAATCCTGCCAATGCTTTCCTTGAGTACGTTAACAAGTGGAAGGAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT WAC_Acf1_DNA_bd WHIM1 WSD

Protein Analysis

463

Amino Acids

53.77

Weight (kDa)

8.33

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DDT PF02791 63 - 120 3.1e-20 DDT domain
WSD PF15613 342 - 408 2e-26 Williams-Beuren syndrome DDT (WSD), D-TOX E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1122
AccBSI CCGCTC 1 cut(s) 682
AccI GTMKAC 1 cut(s) 1313
AciI CCGC 6 cut(s) 332, 493, 682, 861, 1018, 1331
AclWI GGATC 2 cut(s) 128, 796
AcsI RAATTY 1 cut(s) 1220
AcuI CTGAAG 1 cut(s) 743
AfaI GTAC 3 cut(s) 384, 1026, 1367
AfiI CCNNNNNNNGG 4 cut(s) 208, 298, 633, 1122
AgsI TTSAA 6 cut(s) 269, 278, 323, 566, 605, 688
AjnI CCWGG 2 cut(s) 25, 1239
AluBI AGCT 5 cut(s) 284, 380, 890, 1150, 1213
AluI AGCT 5 cut(s) 284, 380, 890, 1150, 1213
Alw21I GWGCWC 2 cut(s) 351, 1330
AlwI GGATC 2 cut(s) 128, 796
AoxI GGCC 1 cut(s) 624
ApeKI GCWGC 3 cut(s) 740, 743, 1210
ApoI RAATTY 1 cut(s) 1220
ArsI GACNNNNNNTTYG 2 cut(s) 412, 444
AseI ATTAAT 2 cut(s) 410, 552
AspS9I GGNCC 1 cut(s) 624
AsuHPI GGTGA 5 cut(s) 209, 377, 463, 809, 1196
AsuII TTCGAA 1 cut(s) 1306
BaeI ACNNNNGTAYC 2 cut(s) 1120, 1153
BauI CACGAG 1 cut(s) 1317
BbsI GAAGAC 1 cut(s) 400
Bbv12I GWGCWC 2 cut(s) 351, 1330
BbvI GCAGC 3 cut(s) 727, 755, 1222
BccI CCATC 6 cut(s) 47, 169, 944, 1003, 1079, 1156
BciT130I CCWGG 2 cut(s) 27, 1241
BciVI GTATCC 1 cut(s) 1121
BclI TGATCA 1 cut(s) 472
BfaI CTAG 1 cut(s) 165
BfmI CTRYAG 2 cut(s) 741, 1132
BfuI GTATCC 1 cut(s) 1121
BisI GCNGC 4 cut(s) 333, 741, 744, 1211
BlpI GCTNAGC 1 cut(s) 693
BlsI GCNGC 4 cut(s) 334, 742, 745, 1212
Bme1390I CCNGG 2 cut(s) 27, 1241
BmgT120I GGNCC 1 cut(s) 624
BmiI GGNNCC 2 cut(s) 625, 1076
BmrFI CCNGG 2 cut(s) 27, 1241
BmsI GCATC 2 cut(s) 505, 872
BpiI GAAGAC 1 cut(s) 400
Bpu1102I GCTNAGC 1 cut(s) 693
Bpu14I TTCGAA 1 cut(s) 1306
BpuEI CTTGAG 2 cut(s) 613, 1382
BsaAI YACGTR 1 cut(s) 470
BsaBI GATNNNNATC 1 cut(s) 705
BsaJI CCNNGG 2 cut(s) 941, 1038
BsaXI ACNNNNNCTCC 6 cut(s) 765, 795, 1004, 1034, 1280, 1310
Bsc4I CCNNNNNNNGG 4 cut(s) 208, 298, 633, 1122
Bse1I ACTGG 1 cut(s) 137
Bse8I GATNNNNATC 1 cut(s) 705
BseBI CCWGG 2 cut(s) 27, 1241
BseDI CCNNGG 2 cut(s) 941, 1038
BseGI GGATG 4 cut(s) 124, 598, 952, 1297
BseJI GATNNNNATC 1 cut(s) 705
BseLI CCNNNNNNNGG 4 cut(s) 208, 298, 633, 1122
BseMII CTCAG 1 cut(s) 684
BseNI ACTGG 1 cut(s) 137
BseRI GAGGAG 2 cut(s) 20, 726
BseXI GCAGC 3 cut(s) 727, 755, 1222
BshFI GGCC 1 cut(s) 626
BsiHKAI GWGCWC 2 cut(s) 351, 1330
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 4 cut(s) 208, 298, 633, 1122
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 1 cut(s) 626
Bsp119I TTCGAA 1 cut(s) 1306
Bsp1286I GDGCHC 2 cut(s) 351, 1330
Bsp1407I TGTACA 1 cut(s) 382
Bsp143I GATC 8 cut(s) 67, 133, 148, 472, 718, 801, 820, 1256
Bsp1720I GCTNAGC 1 cut(s) 693
BspACI CCGC 6 cut(s) 332, 493, 682, 861, 1018, 1331
BspANI GGCC 1 cut(s) 626
BspCNI CTCAG 1 cut(s) 685
BspLI GGNNCC 2 cut(s) 625, 1076
BspMAI CTGCAG 1 cut(s) 745
BspPI GGATC 2 cut(s) 128, 796
BspQI GCTCTTC 2 cut(s) 342, 1140
BspT104I TTCGAA 1 cut(s) 1306
BsrBI CCGCTC 1 cut(s) 682
BsrGI TGTACA 1 cut(s) 382
BsrI ACTGG 1 cut(s) 137
BssECI CCNNGG 2 cut(s) 941, 1038
BssMI GATC 8 cut(s) 67, 133, 148, 472, 718, 801, 820, 1256
BssSI CACGAG 1 cut(s) 1317
BssT1I CCWWGG 2 cut(s) 941, 1038
Bst2BI CACGAG 1 cut(s) 1317
Bst2UI CCWGG 2 cut(s) 27, 1241
Bst4CI ACNGT 1 cut(s) 365
Bst6I CTCTTC 4 cut(s) 318, 342, 719, 1140
BstAUI TGTACA 1 cut(s) 382
BstBAI YACGTR 1 cut(s) 470
BstBI TTCGAA 1 cut(s) 1306
BstC8I GCNNGC 3 cut(s) 615, 848, 1326
BstDEI CTNAG 3 cut(s) 442, 693, 1151
BstEII GGTNACC 1 cut(s) 197
BstENI CCTNNNNNAGG 1 cut(s) 631
BstF5I GGATG 4 cut(s) 124, 598, 952, 1297
BstKTI GATC 8 cut(s) 70, 136, 151, 475, 721, 804, 823, 1259
BstMBI GATC 8 cut(s) 67, 133, 148, 472, 718, 801, 820, 1256
BstMWI GCNNNNNNNGC 4 cut(s) 530, 623, 1236, 1330
BstNI CCWGG 2 cut(s) 27, 1241
BstPI GGTNACC 1 cut(s) 197
BstSCI CCNGG 2 cut(s) 25, 1239
BstSFI CTRYAG 2 cut(s) 741, 1132
BstV1I GCAGC 3 cut(s) 727, 755, 1222
BstV2I GAAGAC 1 cut(s) 400
BstX2I RGATCY 1 cut(s) 801
BstXI CCANNNNNNTGG 1 cut(s) 1085
BstYI RGATCY 1 cut(s) 801
BsuI GTATCC 1 cut(s) 1121
BsuRI GGCC 1 cut(s) 626
BtsCI GGATG 4 cut(s) 124, 598, 952, 1297
BtsI GCAGTG 1 cut(s) 1127
BtsIMutI CAGTG 2 cut(s) 1127, 1169
Cac8I GCNNGC 3 cut(s) 615, 848, 1326
Cfr13I GGNCC 1 cut(s) 624
CseI GACGC 1 cut(s) 935
Csp6I GTAC 3 cut(s) 383, 1025, 1366
CviAII CATG 2 cut(s) 329, 824
CviQI GTAC 3 cut(s) 383, 1025, 1366
DdeI CTNAG 3 cut(s) 442, 693, 1151
DpnI GATC 8 cut(s) 69, 135, 150, 474, 720, 803, 822, 1258
DpnII GATC 8 cut(s) 67, 133, 148, 472, 718, 801, 820, 1256
Eam1104I CTCTTC 4 cut(s) 318, 342, 719, 1140
EarI CTCTTC 4 cut(s) 318, 342, 719, 1140
EciI GGCGGA 1 cut(s) 1320
Eco130I CCWWGG 2 cut(s) 941, 1038
Eco57I CTGAAG 1 cut(s) 743
Eco91I GGTNACC 1 cut(s) 197
EcoNI CCTNNNNNAGG 1 cut(s) 631
EcoO109I RGGNCCY 1 cut(s) 624
EcoO65I GGTNACC 1 cut(s) 197
EcoRII CCWGG 2 cut(s) 25, 1239
EcoT14I CCWWGG 2 cut(s) 941, 1038
ErhI CCWWGG 2 cut(s) 941, 1038
FaeI CATG 2 cut(s) 332, 827
FaqI GGGAC 1 cut(s) 182
FatI CATG 2 cut(s) 328, 823
FauI CCCGC 1 cut(s) 486
FbaI TGATCA 1 cut(s) 472
FblI GTMKAC 1 cut(s) 1313
Fnu4HI GCNGC 4 cut(s) 333, 741, 744, 1211
FokI GGATG 4 cut(s) 111, 605, 959, 1304
Fsp4HI GCNGC 4 cut(s) 333, 741, 744, 1211
FspBI CTAG 1 cut(s) 165
GluI GCNGC 4 cut(s) 333, 741, 744, 1211
HaeIII GGCC 1 cut(s) 626
HgaI GACGC 1 cut(s) 935
Hin1II CATG 2 cut(s) 332, 827
HincII GTYRAC 1 cut(s) 1372
HindII GTYRAC 1 cut(s) 1372
HinfI GANTC 7 cut(s) 83, 310, 566, 714, 1034, 1112, 1295
HpaI GTTAAC 1 cut(s) 1372
HphI GGTGA 5 cut(s) 209, 377, 463, 809, 1196
Hpy166II GTNNAC 3 cut(s) 454, 1314, 1372
Hpy188I TCNGA 6 cut(s) 61, 542, 723, 832, 919, 1111
Hpy188III TCNNGA 4 cut(s) 128, 266, 461, 1247
Hpy8I GTNNAC 3 cut(s) 454, 1314, 1372
HpyAV CCTTC 5 cut(s) 165, 292, 901, 1302, 1375
HpyCH4III ACNGT 1 cut(s) 365
HpyCH4IV ACGT 2 cut(s) 469, 1368
HpyCH4V TGCA 4 cut(s) 247, 743, 1179, 1283
HpyF10VI GCNNNNNNNGC 4 cut(s) 530, 623, 1236, 1330
HpyF3I CTNAG 3 cut(s) 442, 693, 1151
HpySE526I ACGT 2 cut(s) 469, 1368
Hsp92II CATG 2 cut(s) 332, 827
Ksp22I TGATCA 1 cut(s) 472
KspAI GTTAAC 1 cut(s) 1372
Kzo9I GATC 8 cut(s) 67, 133, 148, 472, 718, 801, 820, 1256
LguI GCTCTTC 2 cut(s) 342, 1140
LmnI GCTCC 2 cut(s) 895, 1333
Lsp1109I GCAGC 3 cut(s) 727, 755, 1222
LweI GCATC 2 cut(s) 505, 872
MaeI CTAG 1 cut(s) 165
MaeII ACGT 2 cut(s) 469, 1368
MaeIII GTNAC 3 cut(s) 197, 497, 1167
MalI GATC 8 cut(s) 69, 135, 150, 474, 720, 803, 822, 1258
MbiI CCGCTC 1 cut(s) 682
MboI GATC 8 cut(s) 67, 133, 148, 472, 718, 801, 820, 1256
MfeI CAATTG 2 cut(s) 99, 851
MflI RGATCY 1 cut(s) 801
MhlI GDGCHC 2 cut(s) 351, 1330
MlyI GAGTC 4 cut(s) 304, 723, 1028, 1304
MmeI TCCRAC 1 cut(s) 570
MseI TTAA 6 cut(s) 174, 206, 410, 552, 705, 1371
MslI CAYNNNNRTG 1 cut(s) 129
MspA1I CMGCKG 1 cut(s) 1213
MspR9I CCNGG 2 cut(s) 27, 1241
MunI CAATTG 2 cut(s) 99, 851
MvaI CCWGG 2 cut(s) 27, 1241
MwoI GCNNNNNNNGC 4 cut(s) 530, 623, 1236, 1330
NdeII GATC 8 cut(s) 67, 133, 148, 472, 718, 801, 820, 1256
NlaIII CATG 2 cut(s) 332, 827
NlaIV GGNNCC 2 cut(s) 625, 1076
NmuCI GTSAC 3 cut(s) 197, 497, 1167
NspV TTCGAA 1 cut(s) 1306
PciSI GCTCTTC 2 cut(s) 342, 1140
PfeI GAWTC 3 cut(s) 83, 566, 1112
PflMI CCANNNNNTGG 1 cut(s) 1122
PkrI GCNGC 4 cut(s) 334, 742, 745, 1212
PleI GAGTC 4 cut(s) 304, 722, 1028, 1303
PpsI GAGTC 4 cut(s) 304, 722, 1028, 1303
Ppu21I YACGTR 1 cut(s) 470
PshBI ATTAAT 2 cut(s) 410, 552
Psp6I CCWGG 2 cut(s) 25, 1239
PspEI GGTNACC 1 cut(s) 197
PspGI CCWGG 2 cut(s) 25, 1239
PspN4I GGNNCC 2 cut(s) 625, 1076
PspPI GGNCC 1 cut(s) 624
PstI CTGCAG 1 cut(s) 745
PsuI RGATCY 1 cut(s) 801
PvuII CAGCTG 1 cut(s) 1213
RsaI GTAC 3 cut(s) 384, 1026, 1367
RsaNI GTAC 3 cut(s) 383, 1025, 1366
RseI CAYNNNNRTG 1 cut(s) 129
SapI GCTCTTC 2 cut(s) 342, 1140
SaqAI TTAA 6 cut(s) 174, 206, 410, 552, 705, 1371
SatI GCNGC 4 cut(s) 333, 741, 744, 1211
Sau3AI GATC 8 cut(s) 67, 133, 148, 472, 718, 801, 820, 1256
Sau96I GGNCC 1 cut(s) 624
SchI GAGTC 4 cut(s) 304, 723, 1028, 1304
ScrFI CCNGG 2 cut(s) 27, 1241
SduI GDGCHC 2 cut(s) 351, 1330
SfaNI GCATC 2 cut(s) 505, 872
SfcI CTRYAG 2 cut(s) 741, 1132
SfuI TTCGAA 1 cut(s) 1306
SmiMI CAYNNNNRTG 1 cut(s) 129
SmlI CTYRAG 2 cut(s) 628, 1361
SmoI CTYRAG 2 cut(s) 628, 1361
SsiI CCGC 6 cut(s) 332, 493, 682, 861, 1018, 1331
SspI AATATT 2 cut(s) 574, 995
SspMI CTAG 1 cut(s) 165
StyD4I CCNGG 2 cut(s) 25, 1239
StyI CCWWGG 2 cut(s) 941, 1038
TaaI ACNGT 1 cut(s) 365
TaiI ACGT 2 cut(s) 472, 1371
TaqI TCGA 4 cut(s) 709, 717, 1248, 1306
TatI WGTACW 1 cut(s) 382
TauI GCSGC 1 cut(s) 335
TfiI GAWTC 3 cut(s) 83, 566, 1112
Tru1I TTAA 6 cut(s) 174, 206, 410, 552, 705, 1371
Tru9I TTAA 6 cut(s) 174, 206, 410, 552, 705, 1371
TscAI CASTG 2 cut(s) 1127, 1176
TseFI GTSAC 3 cut(s) 197, 497, 1167
TseI GCWGC 3 cut(s) 740, 743, 1210
Tsp45I GTSAC 3 cut(s) 197, 497, 1167
TspDTI ATGAA 4 cut(s) 36, 216, 609, 911
TspGWI ACGGA 2 cut(s) 786, 1000
TspRI CASTG 2 cut(s) 1127, 1176
Van91I CCANNNNNTGG 1 cut(s) 1122
VspI ATTAAT 2 cut(s) 410, 552
XagI CCTNNNNNAGG 1 cut(s) 631
XapI RAATTY 1 cut(s) 1220
XmiI GTMKAC 1 cut(s) 1313
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.