Rorug02G0246200

DDT domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003443
Physical Location & Seq
Reverse (-)
25620578 .. 25621078
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0246200.1

Sequence Viewer

Length: 501 bp
ATGATCGATGGGTCCGGGTCTTCCTCAAGTGGAGGAAGGCTACATCTCCCCAAATCTAAGGTTGGGGTTTCTGGGAAAGCTGATGTCGACCCCGAAGATGGTGAGCGGCGGACGGAGTCTAGGTTGGCTAGAGTGGAGGTGGATGAGACGATGGGGACGACTAAAGCTAAGAGCAGTGGGGGCCGCGGGGGCAAAGGAAAACGAGGCTGTGGCAGAGCGGGCTCTGAGTCTGGAGCTCGTTCTTGCGAAAGTGCGACGCCGAAGCAGTCACTGCAACTGGGAGGCATAGCACCGTCCATGGTTTCACCGGAGTTGGATACGGCATCAGGGACAGGCGGACTTGTGCGTAAAGGGAAGGGTCGACGTGGATTTCCAGTTGGTGGTCGAGGTTGCAGGTCTGGCAGGAATCTGGGTTCACCTCGAAAAGCTGTTTCTTCTATGGTTCCAGGTAACGATACAACCGTGATGGGCTCCGGTTCTTGGGCCCATCACGAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT WAC_Acf1_DNA_bd WHIM1 WSD

Protein Analysis

166

Amino Acids

16.81

Weight (kDa)

10.23

Isoelectric Point (pI)

50.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 384
AccB7I CCANNNNNTGG 1 cut(s) 380
AccBSI CCGCTC 2 cut(s) 106, 218
AccI GTMKAC 2 cut(s) 87, 361
AccII CGCG 1 cut(s) 186
AciI CCGC 6 cut(s) 106, 109, 184, 186, 218, 336
AcyI GRCGYC 1 cut(s) 257
AfiI CCNNNNNNNGG 3 cut(s) 98, 380, 480
AjiI CACGTC 1 cut(s) 365
AjnI CCWGG 1 cut(s) 445
AloI GAACNNNNNNTCC 2 cut(s) 397, 429
AluBI AGCT 4 cut(s) 80, 167, 236, 428
AluI AGCT 4 cut(s) 80, 167, 236, 428
Alw21I GWGCWC 1 cut(s) 238
Alw26I GTCTC 1 cut(s) 140
AlwNI CAGNNNCTG 1 cut(s) 271
AoxI GGCC 2 cut(s) 181, 483
ApaI GGGCCC 1 cut(s) 487
AspS9I GGNCC 4 cut(s) 12, 181, 483, 484
AsuC2I CCSGG 1 cut(s) 16
AsuHPI GGTGA 3 cut(s) 113, 297, 408
AvaII GGWCC 1 cut(s) 12
BaeGI GKGCMC 1 cut(s) 487
BaeI ACNNNNGTAYC 2 cut(s) 447, 480
BanII GRGCYC 4 cut(s) 224, 238, 473, 487
BauI CACGAG 1 cut(s) 491
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 238
BccI CCATC 5 cut(s) 2, 92, 145, 460, 495
BceAI ACGGC 1 cut(s) 336
BciT130I CCWGG 1 cut(s) 447
BciVI GTATCC 1 cut(s) 310
BcnI CCSGG 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 140
BfaI CTAG 2 cut(s) 120, 129
BfuAI ACCTGC 1 cut(s) 384
BfuI GTATCC 1 cut(s) 310
BglI GCCNNNNNGGC 1 cut(s) 189
BisI GCNGC 2 cut(s) 107, 184
BlsI GCNGC 2 cut(s) 108, 185
Bme1390I CCNGG 2 cut(s) 16, 447
Bme18I GGWCC 1 cut(s) 12
BmgBI CACGTC 1 cut(s) 365
BmgT120I GGNCC 4 cut(s) 12, 181, 483, 484
BmiI GGNNCC 5 cut(s) 13, 182, 444, 472, 485
BmrFI CCNGG 2 cut(s) 16, 447
BmrI ACTGGG 1 cut(s) 287
BmsI GCATC 1 cut(s) 332
BmuI ACTGGG 1 cut(s) 287
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 10
BpuMI CCSGG 1 cut(s) 16
Bsa29I ATCGAT 1 cut(s) 6
BsaHI GRCGYC 1 cut(s) 257
BsaJI CCNNGG 2 cut(s) 184, 297
BsaWI WCCGGW 2 cut(s) 307, 473
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 380, 480
Bse1I ACTGG 2 cut(s) 282, 374
BseBI CCWGG 1 cut(s) 447
BseCI ATCGAT 1 cut(s) 6
BseDI CCNNGG 2 cut(s) 184, 297
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 3 cut(s) 98, 380, 480
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 2 cut(s) 282, 374
BseSI GKGCMC 1 cut(s) 487
Bsh1236I CGCG 1 cut(s) 186
BshFI GGCC 2 cut(s) 183, 485
BshVI ATCGAT 1 cut(s) 6
BsiHKAI GWGCWC 1 cut(s) 238
BsiSI CCGG 3 cut(s) 15, 308, 474
BslFI GGGAC 2 cut(s) 169, 343
BslI CCNNNNNNNGG 3 cut(s) 98, 380, 480
BsmAI GTCTC 1 cut(s) 140
BsmBI CGTCTC 1 cut(s) 140
BsmFI GGGAC 2 cut(s) 169, 343
BsnI GGCC 2 cut(s) 183, 485
Bsp120I GGGCCC 1 cut(s) 483
Bsp1286I GDGCHC 4 cut(s) 224, 238, 473, 487
Bsp143I GATC 1 cut(s) 3
Bsp19I CCATGG 1 cut(s) 297
BspACI CCGC 6 cut(s) 106, 109, 184, 186, 218, 336
BspANI GGCC 2 cut(s) 183, 485
BspCNI CTCAG 1 cut(s) 217
BspDI ATCGAT 1 cut(s) 6
BspFNI CGCG 1 cut(s) 186
BspLI GGNNCC 5 cut(s) 13, 182, 444, 472, 485
BspMI ACCTGC 1 cut(s) 384
BsrBI CCGCTC 2 cut(s) 106, 218
BsrI ACTGG 2 cut(s) 282, 374
BssECI CCNNGG 2 cut(s) 184, 297
BssMI GATC 1 cut(s) 3
BssNI GRCGYC 1 cut(s) 257
BssSI CACGAG 1 cut(s) 491
BssT1I CCWWGG 1 cut(s) 297
Bst2BI CACGAG 1 cut(s) 491
Bst2UI CCWGG 1 cut(s) 447
Bst4CI ACNGT 2 cut(s) 294, 463
BstACI GRCGYC 1 cut(s) 257
BstAPI GCANNNNNTGC 1 cut(s) 271
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 3 cut(s) 57, 168, 225
BstDSI CCRYGG 2 cut(s) 184, 297
BstF5I GGATG 1 cut(s) 148
BstFNI CGCG 1 cut(s) 186
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 5 cut(s) 180, 189, 219, 271, 399
BstNI CCWGG 1 cut(s) 447
BstSCI CCNGG 2 cut(s) 14, 445
BstSLI GKGCMC 1 cut(s) 487
BstUI CGCG 1 cut(s) 186
BstV2I GAAGAC 1 cut(s) 12
Bsu15I ATCGAT 1 cut(s) 6
BsuI GTATCC 1 cut(s) 310
BsuRI GGCC 2 cut(s) 183, 485
BsuTUI ATCGAT 1 cut(s) 6
BtgI CCRYGG 2 cut(s) 184, 297
BtrI CACGTC 1 cut(s) 365
BtsCI GGATG 1 cut(s) 148
BtsI GCAGTG 2 cut(s) 181, 269
BtsIMutI CAGTG 2 cut(s) 181, 269
BveI ACCTGC 1 cut(s) 384
Cac8I GCNNGC 1 cut(s) 220
CaiI CAGNNNCTG 1 cut(s) 271
Cfr13I GGNCC 4 cut(s) 12, 181, 483, 484
Cfr42I CCGCGG 1 cut(s) 187
ClaI ATCGAT 1 cut(s) 6
CseI GACGC 1 cut(s) 265
CviAII CATG 1 cut(s) 298
DdeI CTNAG 3 cut(s) 57, 168, 225
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
EciI GGCGGA 2 cut(s) 124, 351
Ecl136II GAGCTC 1 cut(s) 236
Eco130I CCWWGG 1 cut(s) 297
Eco24I GRGCYC 4 cut(s) 224, 238, 473, 487
Eco47I GGWCC 1 cut(s) 12
Eco53kI GAGCTC 1 cut(s) 236
EcoICRI GAGCTC 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 445
EcoT14I CCWWGG 1 cut(s) 297
EcoT38I GRGCYC 4 cut(s) 224, 238, 473, 487
ErhI CCWWGG 1 cut(s) 297
Esp3I CGTCTC 1 cut(s) 140
FaeI CATG 1 cut(s) 301
FaiI YATR 3 cut(s) 287, 299, 440
FaqI GGGAC 2 cut(s) 169, 343
FatI CATG 1 cut(s) 297
FauI CCCGC 2 cut(s) 179, 211
FblI GTMKAC 2 cut(s) 87, 361
Fnu4HI GCNGC 2 cut(s) 107, 184
FokI GGATG 1 cut(s) 155
FriOI GRGCYC 4 cut(s) 224, 238, 473, 487
Fsp4HI GCNGC 2 cut(s) 107, 184
FspBI CTAG 2 cut(s) 120, 129
GluI GCNGC 2 cut(s) 107, 184
GsuI CTGGAG 1 cut(s) 252
HaeIII GGCC 2 cut(s) 183, 485
HapII CCGG 3 cut(s) 15, 308, 474
HgaI GACGC 1 cut(s) 265
Hin1I GRCGYC 1 cut(s) 257
Hin1II CATG 1 cut(s) 301
HincII GTYRAC 2 cut(s) 88, 362
HindII GTYRAC 2 cut(s) 88, 362
HinfI GANTC 3 cut(s) 116, 227, 406
HpaII CCGG 3 cut(s) 15, 308, 474
HphI GGTGA 3 cut(s) 113, 297, 408
Hpy166II GTNNAC 3 cut(s) 88, 362, 416
Hpy188I TCNGA 1 cut(s) 226
Hpy188III TCNNGA 2 cut(s) 231, 491
Hpy8I GTNNAC 3 cut(s) 88, 362, 416
Hpy99I CGWCG 2 cut(s) 259, 366
HpyAV CCTTC 2 cut(s) 30, 349
HpyCH4III ACNGT 2 cut(s) 294, 463
HpyCH4IV ACGT 1 cut(s) 364
HpyCH4V TGCA 2 cut(s) 274, 393
HpyF10VI GCNNNNNNNGC 5 cut(s) 180, 189, 219, 271, 399
HpyF3I CTNAG 3 cut(s) 57, 168, 225
HpySE526I ACGT 1 cut(s) 364
Hsp92I GRCGYC 1 cut(s) 257
Hsp92II CATG 1 cut(s) 301
KspI CCGCGG 1 cut(s) 187
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 2 cut(s) 233, 476
LweI GCATC 1 cut(s) 332
MaeI CTAG 2 cut(s) 120, 129
MaeII ACGT 1 cut(s) 364
MaeIII GTNAC 2 cut(s) 267, 449
MalI GATC 1 cut(s) 5
MbiI CCGCTC 2 cut(s) 106, 218
MboI GATC 1 cut(s) 3
MboII GAAGA 3 cut(s) 12, 107, 426
MhlI GDGCHC 4 cut(s) 224, 238, 473, 487
MlyI GAGTC 2 cut(s) 125, 236
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 7 cut(s) 26, 34, 130, 197, 275, 380, 429
MspA1I CMGCKG 1 cut(s) 186
MspI CCGG 3 cut(s) 15, 308, 474
MspR9I CCNGG 2 cut(s) 16, 447
MvaI CCWGG 1 cut(s) 447
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 5 cut(s) 180, 189, 219, 271, 399
NciI CCSGG 1 cut(s) 16
NcoI CCATGG 1 cut(s) 297
NdeII GATC 1 cut(s) 3
NlaIII CATG 1 cut(s) 301
NlaIV GGNNCC 5 cut(s) 13, 182, 444, 472, 485
NmuCI GTSAC 1 cut(s) 267
PcsI WCGNNNNNNNCGW 2 cut(s) 155, 459
PfeI GAWTC 1 cut(s) 406
PflFI GACNNNGTC 1 cut(s) 115
PflMI CCANNNNNTGG 1 cut(s) 380
PkrI GCNGC 2 cut(s) 108, 185
PleI GAGTC 2 cut(s) 124, 235
PpsI GAGTC 2 cut(s) 124, 235
Psp124BI GAGCTC 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 445
PspGI CCWGG 1 cut(s) 445
PspN4I GGNNCC 5 cut(s) 13, 182, 444, 472, 485
PspOMI GGGCCC 1 cut(s) 483
PspPI GGNCC 4 cut(s) 12, 181, 483, 484
PstNI CAGNNNCTG 1 cut(s) 271
PsyI GACNNNGTC 1 cut(s) 115
SacI GAGCTC 1 cut(s) 238
SacII CCGCGG 1 cut(s) 187
SalI GTCGAC 2 cut(s) 86, 360
SatI GCNGC 2 cut(s) 107, 184
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 4 cut(s) 12, 181, 483, 484
SchI GAGTC 2 cut(s) 125, 236
ScrFI CCNGG 2 cut(s) 16, 447
SduI GDGCHC 4 cut(s) 224, 238, 473, 487
SfaNI GCATC 1 cut(s) 332
Sfr303I CCGCGG 1 cut(s) 187
SgrBI CCGCGG 1 cut(s) 187
SinI GGWCC 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
SsiI CCGC 6 cut(s) 106, 109, 184, 186, 218, 336
SspMI CTAG 2 cut(s) 120, 129
SstI GAGCTC 1 cut(s) 238
StyD4I CCNGG 2 cut(s) 14, 445
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 2 cut(s) 294, 463
TaiI ACGT 1 cut(s) 367
TaqI TCGA 5 cut(s) 6, 87, 361, 385, 421
TauI GCSGC 2 cut(s) 109, 186
TfiI GAWTC 1 cut(s) 406
TscAI CASTG 2 cut(s) 181, 276
TseFI GTSAC 1 cut(s) 267
Tsp45I GTSAC 1 cut(s) 267
TspGWI ACGGA 1 cut(s) 128
TspRI CASTG 2 cut(s) 181, 276
Tth111I GACNNNGTC 1 cut(s) 115
Van91I CCANNNNNTGG 1 cut(s) 380
VpaK11BI GGWCC 1 cut(s) 12
XmiI GTMKAC 2 cut(s) 87, 361
XspI CTAG 2 cut(s) 120, 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.