Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0019383

Physical Location & Seq

Genomic Coordinates Reverse (-)

61111747 .. 61112291

Gene Structure 545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00126040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTTCAAACTTGGCTTACTTGGATGCGGTGATATGTTTCATGGTTGCATAATTCTCTATGGTTTCCATTCATATGCCTTTATTGGGAATGGCTTGGTTAACATGTATGCTAAATGCAGGGAATTGAAAGGGTCCATCTGCGCATTCTGTGATATATTGCACAAGGATTGGTATCTTGGAATGCGATGTTGGGAAAGTCACATACTTTTTGAAACAATGCAAGCAATTTATGGTCTCTCTCCTGAGAAAGATCATGTGGCATGCATGGTGGATATGCTTGCTAGAGGTGGATACTTAGCTGAAGCAAGGGAACGGGCTGATAGGTATTGTTCAGTATATGCTAAGACCAGCTCGCGTGAAGCTCTGCTTGGAACATGTTCTGCACATGGGAAGTTCAGAATTGGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

136

Amino Acids

15.31

Weight (kDa)

8.37

Isoelectric Point (pI)

28.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019383)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0118031
rosa_laevigata	RLG00000018388
rosa_multiflora	Rmu_sc0000948.1_g000022
rosa_roxburghii	Rroxscaffold_2G00126040
rosa_samantha	Rh2AG272200 Rh2BG284200 Rh2DG298400
rosa_wichuraiana	Rw2G021510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	142
AccII	CGCG	1 cut(s)	355
AciI	CCGC	1 cut(s)	27
AcuI	CTGAAG	1 cut(s)	321
AfiI	CCNNNNNNNGG	1 cut(s)	84
AflIII	ACRYGT	2 cut(s)	102, 374
AgsI	TTSAA	3 cut(s)	7, 127, 212
AjuI	GAANNNNNNNTTGG	4 cut(s)	172, 204, 351, 383
AluBI	AGCT	3 cut(s)	299, 351, 362
AluI	AGCT	3 cut(s)	299, 351, 362
Alw26I	GTCTC	1 cut(s)	239
Asp700I	GAANNNNTTC	1 cut(s)	376
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	132
AsuHPI	GGTGA	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	132
BccI	CCATC	1 cut(s)	143
BciVI	GTATCC	1 cut(s)	284
BcoDI	GTCTC	1 cut(s)	239
BfaI	CTAG	1 cut(s)	282
BfuI	GTATCC	1 cut(s)	284
Bme18I	GGWCC	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	133
BmsI	GCATC	1 cut(s)	14
BsaBI	GATNNNNATC	1 cut(s)	171
BsaI	GGTCTC	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse8I	GATNNNNATC	1 cut(s)	171
BseGI	GGATG	1 cut(s)	29
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseMII	CTCAG	1 cut(s)	234
BsgI	GTGCAG	1 cut(s)	366
Bsh1236I	CGCG	1 cut(s)	355
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmAI	GTCTC	1 cut(s)	239
BsmI	GAATGC	2 cut(s)	143, 186
Bso31I	GGTCTC	1 cut(s)	239
Bsp143I	GATC	1 cut(s)	250
BspACI	CCGC	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	355
BspLI	GGNNCC	1 cut(s)	133
BspTNI	GGTCTC	1 cut(s)	239
BssMI	GATC	1 cut(s)	250
BstC8I	GCNNGC	4 cut(s)	222, 262, 279, 353
BstDEI	CTNAG	3 cut(s)	243, 295, 342
BstF5I	GGATG	1 cut(s)	29
BstFNI	CGCG	1 cut(s)	355
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	1 cut(s)	253
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	1 cut(s)	250
BstNSI	RCATGY	3 cut(s)	106, 264, 378
BstUI	CGCG	1 cut(s)	355
BsuI	GTATCC	1 cut(s)	284
BtgZI	GCGATG	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	29
Cac8I	GCNNGC	4 cut(s)	222, 262, 279, 353
CfoI	GCGC	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	132
CviAII	CATG	7 cut(s)	41, 103, 254, 261, 265, 375, 386
CviJI	RGCY	6 cut(s)	15, 93, 299, 317, 351, 362
CviKI_1	RGCY	6 cut(s)	15, 93, 299, 317, 351, 362
DdeI	CTNAG	3 cut(s)	243, 295, 342
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
Eco31I	GGTCTC	1 cut(s)	239
Eco47I	GGWCC	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	321
EcoT22I	ATGCAT	1 cut(s)	266
FaeI	CATG	7 cut(s)	44, 106, 257, 264, 268, 378, 389
FalI	AAGNNNNNCTT	2 cut(s)	351, 383
FatI	CATG	7 cut(s)	40, 102, 253, 260, 264, 374, 385
FauNDI	CATATG	1 cut(s)	73
FokI	GGATG	1 cut(s)	36
FspBI	CTAG	1 cut(s)	282
FspI	TGCGCA	1 cut(s)	142
GlaI	GCGC	1 cut(s)	142
HhaI	GCGC	1 cut(s)	143
Hin1II	CATG	7 cut(s)	44, 106, 257, 264, 268, 378, 389
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HpaI	GTTAAC	1 cut(s)	100
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	1 cut(s)	398
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	1 cut(s)	100
HpyCH4V	TGCA	6 cut(s)	48, 117, 160, 220, 264, 383
HpyF3I	CTNAG	3 cut(s)	243, 295, 342
Hsp92II	CATG	7 cut(s)	44, 106, 257, 264, 268, 378, 389
HspAI	GCGC	1 cut(s)	141
KspAI	GTTAAC	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	250
LpnPI	CCDG	3 cut(s)	103, 255, 361
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	282
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MluCI	AATT	4 cut(s)	51, 122, 225, 399
MnlI	CCTC	1 cut(s)	278
Mph1103I	ATGCAT	1 cut(s)	266
MroXI	GAANNNNTTC	1 cut(s)	376
MseI	TTAA	1 cut(s)	99
MslI	CAYNNNNRTG	1 cut(s)	72
Mva1269I	GAATGC	2 cut(s)	143, 186
MvnI	CGCG	1 cut(s)	355
NdeI	CATATG	1 cut(s)	73
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	7 cut(s)	44, 106, 257, 264, 268, 378, 389
NlaIV	GGNNCC	1 cut(s)	133
NmuCI	GTSAC	1 cut(s)	197
NsbI	TGCGCA	1 cut(s)	142
NsiI	ATGCAT	1 cut(s)	266
NspI	RCATGY	3 cut(s)	106, 264, 378
PaeI	GCATGC	1 cut(s)	264
PciI	ACATGT	2 cut(s)	102, 374
PctI	GAATGC	2 cut(s)	143, 186
PdmI	GAANNNNTTC	1 cut(s)	376
PscI	ACATGT	2 cut(s)	102, 374
PspN4I	GGNNCC	1 cut(s)	133
PspPI	GGNCC	1 cut(s)	132
RseI	CAYNNNNRTG	1 cut(s)	72
SaqAI	TTAA	1 cut(s)	99
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	1 cut(s)	132
SetI	ASST	5 cut(s)	289, 301, 326, 353, 364
SfaNI	GCATC	1 cut(s)	14
SinI	GGWCC	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	72
SphI	GCATGC	1 cut(s)	264
Sse9I	AATT	4 cut(s)	51, 122, 225, 399
SsiI	CCGC	1 cut(s)	27
SspMI	CTAG	1 cut(s)	282
TasI	AATT	4 cut(s)	51, 122, 225, 399
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TseFI	GTSAC	1 cut(s)	197
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	2 cut(s)	29, 60
VpaK11BI	GGWCC	1 cut(s)	132
XceI	RCATGY	3 cut(s)	106, 264, 378
XmnI	GAANNNNTTC	1 cut(s)	376
XspI	CTAG	1 cut(s)	282
Zsp2I	ATGCAT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.