Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0019383

Physical Location & Seq

Genomic Coordinates Forward (+)

29837497 .. 29838036

Gene Structure 540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G021510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGTTCAAACTTGGCTTACTTGGACGCGGTGATATGTTTCATGGTTGCATAATTCTCTATGGTTTCCATTCATATGCCTTTATTGGGAATGGCTTGGTTAACATGTATGCTAAATGCAGAGAATTGAAAGGGTCCATCTGTGCATTCTGTGAAATATTGCACAAGGATTGGTATCTTGGAATGCGATGGTTGATTGCTTTTGGATTGCATGGAAAAGCTATCCAATTTCTACAAGTTTTTGAACAAATGGTGGTGAATCAGGTTAAACCAGATAATGTTACCTTCATCTTCTTGTTGATGGCTTGCATCCATTCTGGATTAATAGGGGAAAGTCCCATACTTTTTGAAACAATGCAAACAATTTATGGTCTCTCTCCTGAGAAAGATCATGTAGCATGCATGGTGGATATGCTTGCTAGAGGTGGATACTTAGCTGAAGCAAGGGAGCGGGCTGATTGTTCAGTATATGCTAAGACCAGCTTGCGTGAAGCTCTGCTTGGAACATGTTCTGCACATGGGAAGTTGGGATTTGGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

179

Amino Acids

19.96

Weight (kDa)

8.11

Isoelectric Point (pI)

28.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0019383)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0118031
rosa_laevigata	RLG00000018388
rosa_multiflora	Rmu_sc0000948.1_g000022
rosa_roxburghii	Rroxscaffold_2G00126040
rosa_samantha	Rh2AG272200 Rh2BG284200 Rh2DG298400
rosa_wichuraiana	Rw2G021510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	448
AccII	CGCG	1 cut(s)	27
AciI	CCGC	2 cut(s)	27, 448
AcuI	CTGAAG	1 cut(s)	456
AfiI	CCNNNNNNNGG	1 cut(s)	84
AflIII	ACRYGT	2 cut(s)	102, 503
AgsI	TTSAA	4 cut(s)	7, 127, 242, 347
AjuI	GAANNNNNNNTTGG	2 cut(s)	480, 512
AluBI	AGCT	4 cut(s)	218, 434, 480, 491
AluI	AGCT	4 cut(s)	218, 434, 480, 491
Alw26I	GTCTC	1 cut(s)	374
AseI	ATTAAT	1 cut(s)	320
Asp700I	GAANNNNTTC	1 cut(s)	505
AspS9I	GGNCC	1 cut(s)	132
AsuHPI	GGTGA	2 cut(s)	41, 265
AvaII	GGWCC	1 cut(s)	132
BccI	CCATC	3 cut(s)	143, 180, 292
BciVI	GTATCC	1 cut(s)	419
BcoDI	GTCTC	1 cut(s)	374
BfaI	CTAG	1 cut(s)	417
BfuI	GTATCC	1 cut(s)	419
Bme18I	GGWCC	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	133
BmsI	GCATC	1 cut(s)	315
BsaBI	GATNNNNATC	1 cut(s)	171
BsaI	GGTCTC	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse8I	GATNNNNATC	1 cut(s)	171
BseGI	GGATG	1 cut(s)	306
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseMII	CTCAG	1 cut(s)	369
BsgI	GTGCAG	1 cut(s)	495
Bsh1236I	CGCG	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmAI	GTCTC	1 cut(s)	374
BsmFI	GGGAC	1 cut(s)	318
BsmI	GAATGC	2 cut(s)	143, 186
Bso31I	GGTCTC	1 cut(s)	374
Bsp143I	GATC	1 cut(s)	385
BspACI	CCGC	2 cut(s)	27, 448
BspCNI	CTCAG	1 cut(s)	370
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	133
BspTNI	GGTCTC	1 cut(s)	374
BsrBI	CCGCTC	1 cut(s)	448
BssMI	GATC	1 cut(s)	385
BstC8I	GCNNGC	5 cut(s)	304, 397, 414, 450, 482
BstDEI	CTNAG	3 cut(s)	378, 430, 471
BstF5I	GGATG	1 cut(s)	306
BstFNI	CGCG	1 cut(s)	27
BstKTI	GATC	1 cut(s)	388
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	1 cut(s)	385
BstNSI	RCATGY	3 cut(s)	106, 399, 507
BstUI	CGCG	1 cut(s)	27
BsuI	GTATCC	1 cut(s)	419
BtgZI	GCGATG	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	306
Cac8I	GCNNGC	5 cut(s)	304, 397, 414, 450, 482
Cfr13I	GGNCC	1 cut(s)	132
CseI	GACGC	1 cut(s)	33
CviAII	CATG	8 cut(s)	41, 103, 209, 389, 396, 400, 504, 515
CviJI	RGCY	8 cut(s)	15, 93, 218, 302, 434, 452, 480, 491
CviKI_1	RGCY	8 cut(s)	15, 93, 218, 302, 434, 452, 480, 491
DdeI	CTNAG	3 cut(s)	378, 430, 471
DpnI	GATC	1 cut(s)	387
DpnII	GATC	1 cut(s)	385
Eco31I	GGTCTC	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	456
EcoT22I	ATGCAT	1 cut(s)	401
FaeI	CATG	8 cut(s)	44, 106, 212, 392, 399, 403, 507, 518
FalI	AAGNNNNNCTT	4 cut(s)	464, 496, 480, 512
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	8 cut(s)	40, 102, 208, 388, 395, 399, 503, 514
FauI	CCCGC	1 cut(s)	441
FauNDI	CATATG	1 cut(s)	73
FokI	GGATG	1 cut(s)	293
FspBI	CTAG	1 cut(s)	417
HgaI	GACGC	1 cut(s)	33
Hin1II	CATG	8 cut(s)	44, 106, 212, 392, 399, 403, 507, 518
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	1 cut(s)	256
HpaI	GTTAAC	1 cut(s)	100
HphI	GGTGA	2 cut(s)	41, 265
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188III	TCNNGA	2 cut(s)	315, 377
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	292
HpyCH4V	TGCA	9 cut(s)	48, 117, 143, 160, 208, 306, 355, 399, 512
HpyF3I	CTNAG	3 cut(s)	378, 430, 471
Hsp92II	CATG	8 cut(s)	44, 106, 212, 392, 399, 403, 507, 518
KspAI	GTTAAC	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	385
LmnI	GCTCC	1 cut(s)	445
LpnPI	CCDG	5 cut(s)	245, 282, 300, 390, 490
LweI	GCATC	1 cut(s)	315
MaeI	CTAG	1 cut(s)	417
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	1 cut(s)	387
MbiI	CCGCTC	1 cut(s)	448
MboI	GATC	1 cut(s)	385
MboII	GAAGA	1 cut(s)	280
MluCI	AATT	4 cut(s)	51, 122, 224, 360
MnlI	CCTC	1 cut(s)	413
Mph1103I	ATGCAT	1 cut(s)	401
MroXI	GAANNNNTTC	1 cut(s)	505
MseI	TTAA	3 cut(s)	99, 264, 320
MslI	CAYNNNNRTG	1 cut(s)	72
Mva1269I	GAATGC	2 cut(s)	143, 186
MvnI	CGCG	1 cut(s)	27
NdeI	CATATG	1 cut(s)	73
NdeII	GATC	1 cut(s)	385
NlaIII	CATG	8 cut(s)	44, 106, 212, 392, 399, 403, 507, 518
NlaIV	GGNNCC	1 cut(s)	133
NsiI	ATGCAT	1 cut(s)	401
NspI	RCATGY	3 cut(s)	106, 399, 507
PaeI	GCATGC	1 cut(s)	399
PciI	ACATGT	2 cut(s)	102, 503
PctI	GAATGC	2 cut(s)	143, 186
PdmI	GAANNNNTTC	1 cut(s)	505
PfeI	GAWTC	1 cut(s)	256
PscI	ACATGT	2 cut(s)	102, 503
PshBI	ATTAAT	1 cut(s)	320
PspN4I	GGNNCC	1 cut(s)	133
PspPI	GGNCC	1 cut(s)	132
RseI	CAYNNNNRTG	1 cut(s)	72
SaqAI	TTAA	3 cut(s)	99, 264, 320
Sau3AI	GATC	1 cut(s)	385
Sau96I	GGNCC	1 cut(s)	132
SetI	ASST	7 cut(s)	220, 264, 284, 424, 436, 482, 493
SfaNI	GCATC	1 cut(s)	315
SinI	GGWCC	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	72
SphI	GCATGC	1 cut(s)	399
Sse9I	AATT	4 cut(s)	51, 122, 224, 360
SsiI	CCGC	2 cut(s)	27, 448
SspI	AATATT	1 cut(s)	156
SspMI	CTAG	1 cut(s)	417
TasI	AATT	4 cut(s)	51, 122, 224, 360
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	3 cut(s)	99, 264, 320
Tru9I	TTAA	3 cut(s)	99, 264, 320
TspDTI	ATGAA	3 cut(s)	29, 60, 274
VpaK11BI	GGWCC	1 cut(s)	132
VspI	ATTAAT	1 cut(s)	320
XceI	RCATGY	3 cut(s)	106, 399, 507
XmnI	GAANNNNTTC	1 cut(s)	505
XspI	CTAG	1 cut(s)	417
Zsp2I	ATGCAT	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.