Rroxscaffold_2G00140870
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
79194605 .. 79195981
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00140870.1

Sequence Viewer

Length: 1377 bp
ATGAGTGGAGCAATGATCTTCATGAAAGAAGATCTCAAAATCAGTGATGTACAAGTCGGAGTCCTCGCCGGGATATTAAACCTATGCGCCCTAGTTGGGTCCTTAGCGGCCGGAAGAACCTCCGATTACATTGGTCGTCGTTACACCATATTCCTATCCTCCATAATTTTCTTGGTGGGGGCAATTCTAATGGGCTACGGGCCAAACTACGCGGTCCTAATGATCGGTAGGTGCACCTCTGGCATAGGTGTGGGCTTTGCACTCATGATCGCCCCGGTTTATGCTGCAGAGATCTCATCCCTTACATCGCGGGGTACACTAACCTCTCTACCGGAGCTTTGTATCAGTCTCGGGCTCTTATTCGGATACTTATCAAATTACCTTTTTGGGAAACTGGCTTTGAAACTTGGCTGGCGATTGATGCTTGGGGTTGCTGGAGTCCCAGCAATTGCTTTGACTATTGGGATTCTCAAAATGCCAGAGTCCCCAAGGTGGTTAGTGATGCAAGGTCGCTTAGGGGAGGCTAAGAAAGTGTTGGAACTGGTTTCTAATACCAAACAAGAAGCTCAAGTTCGTTTTCTTGACATCAAAATTGCGATTGGTATTGACGAAAATACCGATGATGATGTCGTGAAGTATAGAACTAACAATCGAGGAGAAGGGGTGTGGAAAGAATTATTCCTGAGGCCGAGTCCTGCTGTCCGGAGGATTTTGCTAGCGGCAATCGGAATACATTTCTTCGAACATGCAACAGGAATAGAATCCGTGATTTTGTTTAGTCCGAGAATTTTCAAGAAAGCTGGGGTTACTAGCAAAGACACGCTCTTGCTTGCCACAATCGGGGTTGGGGTTACAAAGATTGTGTTTATATTGCTGGCAACATTTCTGATTGACAAGGTTGGTAGGAGGAAGTTATTGTTGACGAGCACTGCGGGGATGATTATCTCTCTCGCAGGATTAGGGTTTGGATTGACCATGGCAGAGAACTCCAAAAAGGAGCTTGCTTGGGCTCTAAGTTTCAGCATTGTGGCAGTGTATGTATTTGTGGCTTTCTTCTCTATTGGACTTGGGCCAATTACATGGGTTTACAGCACTGAGATTTTCCCTTTGAAGTTGAGGGCACAAGGGACTAGTGTTGTTGTAGCTGTGAACAGAGTTATAAATGCTGCTGTTTCAATGAGTTTCATTCCAATTTATAAGGCAATTACAATAGGAGGGGCCTTCTTTATGTTTGCAGGGATATCTGTGTCGGCTTGGGTTTTCTTCTTTTTGTTCTTACCAGAGACTAAAGGAAGGTCTTTGGAAGAGACGGAAATGCTCTTCAGCAATTATAGGACTACTGGTGCTGATCAATCTAGAAACAGTGTTGGAGTGTAA

Protein Analysis

458

Amino Acids

49.6

Weight (kDa)

9.65

Isoelectric Point (pI)

28.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 3 - 270 1.6e-21 Major Facilitator Superfamily
Sugar_tr PF00083 15 - 441 2.3e-104 Sugar (and other) transporter
MFS_1 PF07690 267 - 433 4.8e-08 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014399)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18480 AT4G36670
fragaria_vesca FvH4_1g13630
malus_domestica MD02G1151000.v1.1 MD15G1265500.v1.1
prunus_persica Prupe.7G152100_v2.0.a1
pyrus_communis pycom15g23120
rosa_chinensis RchiOBHm_Chr2g0101981
rosa_laevigata RLG00000017122
rosa_multiflora Rmu_sc0020823.1_g000008
rosa_roxburghii Rroxscaffold_2G00140870
rosa_rugosa Rorug02G0103700
rosa_samantha Rh2AG151700 Rh2BG157100 Rh2CG157100 Rh2DG157200
rosa_wichuraiana Rw2G011840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1160, 1197
AccII CGCG 2 cut(s) 212, 310
AccIII TCCGGA 1 cut(s) 702
AciI CCGC 5 cut(s) 107, 212, 310, 719, 932
AcoI YGGCCR 1 cut(s) 108
AcsI RAATTY 1 cut(s) 786
AcuI CTGAAG 1 cut(s) 1306
AfaI GTAC 2 cut(s) 51, 316
AfiI CCNNNNNNNGG 3 cut(s) 96, 492, 840
AgsI TTSAA 4 cut(s) 403, 793, 1111, 1176
AhlI ACTAGT 1 cut(s) 1130
AluBI AGCT 5 cut(s) 337, 566, 800, 1000, 1145
AluI AGCT 5 cut(s) 337, 566, 800, 1000, 1145
Alw21I GWGCWC 2 cut(s) 236, 929
Alw26I GTCTC 3 cut(s) 353, 1277, 1301
Alw44I GTGCAC 1 cut(s) 232
Ama87I CYCGRG 1 cut(s) 350
Aor13HI TCCGGA 1 cut(s) 702
AoxI GGCC 5 cut(s) 108, 200, 686, 1070, 1218
ApaLI GTGCAC 1 cut(s) 232
ApeKI GCWGC 2 cut(s) 284, 1166
ApoI RAATTY 1 cut(s) 786
AspLEI GCGC 1 cut(s) 89
AspS9I GGNCC 5 cut(s) 99, 200, 214, 1070, 1218
AsuC2I CCSGG 2 cut(s) 70, 275
AsuII TTCGAA 1 cut(s) 741
AsuNHI GCTAGC 1 cut(s) 715
AvaI CYCGRG 1 cut(s) 350
AvaII GGWCC 2 cut(s) 99, 214
AxyI CCTNAGG 1 cut(s) 683
BaeGI GKGCMC 2 cut(s) 236, 1123
BanII GRGCYC 2 cut(s) 357, 1012
Bbv12I GWGCWC 2 cut(s) 236, 929
BbvI GCAGC 2 cut(s) 271, 1153
BciVI GTATCC 1 cut(s) 359
BclI TGATCA 1 cut(s) 1348
BcnI CCSGG 2 cut(s) 70, 275
BcoDI GTCTC 3 cut(s) 353, 1277, 1301
BcuI ACTAGT 1 cut(s) 1130
BfaI CTAG 5 cut(s) 92, 716, 810, 1131, 1356
BfmI CTRYAG 1 cut(s) 285
BfuI GTATCC 1 cut(s) 359
BglII AGATCT 2 cut(s) 31, 291
BisI GCNGC 4 cut(s) 108, 285, 720, 1167
BlsI GCNGC 4 cut(s) 109, 286, 721, 1168
Bme1390I CCNGG 2 cut(s) 70, 275
Bme18I GGWCC 2 cut(s) 99, 214
BmeT110I CYCGRG 1 cut(s) 350
BmgT120I GGNCC 5 cut(s) 99, 200, 214, 1070, 1218
BmiI GGNNCC 2 cut(s) 100, 1219
BmrFI CCNGG 2 cut(s) 70, 275
BmsI GCATC 2 cut(s) 411, 492
BmtI GCTAGC 1 cut(s) 719
BpmI CTGGAG 1 cut(s) 456
Bpu10I CCTNAGC 2 cut(s) 103, 514
Bpu14I TTCGAA 1 cut(s) 741
BpuEI CTTGAG 1 cut(s) 552
BpuMI CCSGG 2 cut(s) 70, 275
BsaBI GATNNNNATC 2 cut(s) 370, 941
BsaJI CCNNGG 3 cut(s) 273, 488, 975
BsaWI WCCGGW 2 cut(s) 331, 702
BsaXI ACNNNNNCTCC 2 cut(s) 648, 678
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 492, 840
Bse1I ACTGG 3 cut(s) 399, 546, 1345
Bse21I CCTNAGG 1 cut(s) 683
Bse3DI GCAATG 1 cut(s) 18
Bse8I GATNNNNATC 2 cut(s) 370, 941
BseAI TCCGGA 1 cut(s) 702
BseDI CCNNGG 3 cut(s) 273, 488, 975
BseGI GGATG 2 cut(s) 296, 942
BseJI GATNNNNATC 2 cut(s) 370, 941
BseLI CCNNNNNNNGG 3 cut(s) 96, 492, 840
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 2 cut(s) 674, 1086
BseNI ACTGG 3 cut(s) 399, 546, 1345
BseRI GAGGAG 1 cut(s) 669
BseSI GKGCMC 2 cut(s) 236, 1123
BseX3I CGGCCG 1 cut(s) 108
BseXI GCAGC 2 cut(s) 271, 1153
BseYI CCCAGC 2 cut(s) 442, 800
Bsh1236I CGCG 2 cut(s) 212, 310
Bsh1285I CGRYCG 1 cut(s) 111
BshFI GGCC 5 cut(s) 110, 202, 688, 1072, 1220
BsiEI CGRYCG 1 cut(s) 111
BsiHKAI GWGCWC 2 cut(s) 236, 929
BsiHKCI CYCGRG 1 cut(s) 350
BsiSI CCGG 5 cut(s) 69, 111, 275, 332, 703
BslFI GGGAC 3 cut(s) 425, 469, 1141
BslI CCNNNNNNNGG 3 cut(s) 96, 492, 840
BsmAI GTCTC 3 cut(s) 353, 1277, 1301
BsmBI CGTCTC 1 cut(s) 1301
BsmFI GGGAC 3 cut(s) 425, 469, 1141
BsnI GGCC 5 cut(s) 110, 202, 688, 1072, 1220
BsoBI CYCGRG 1 cut(s) 350
Bsp119I TTCGAA 1 cut(s) 741
Bsp1286I GDGCHC 5 cut(s) 236, 357, 929, 1012, 1123
Bsp13I TCCGGA 1 cut(s) 702
Bsp1407I TGTACA 1 cut(s) 49
Bsp143I GATC 6 cut(s) 15, 31, 222, 267, 291, 1348
Bsp19I CCATGG 1 cut(s) 975
BspACI CCGC 5 cut(s) 107, 212, 310, 719, 932
BspANI GGCC 5 cut(s) 110, 202, 688, 1072, 1220
BspCNI CTCAG 2 cut(s) 675, 1087
BspEI TCCGGA 1 cut(s) 702
BspFNI CGCG 2 cut(s) 212, 310
BspHI TCATGA 2 cut(s) 21, 264
BspLI GGNNCC 2 cut(s) 100, 1219
BspMAI CTGCAG 1 cut(s) 289
BspOI GCTAGC 1 cut(s) 719
BspQI GCTCTTC 1 cut(s) 1325
BspT104I TTCGAA 1 cut(s) 741
BsrDI GCAATG 1 cut(s) 18
BsrGI TGTACA 1 cut(s) 49
BsrI ACTGG 3 cut(s) 399, 546, 1345
BssECI CCNNGG 3 cut(s) 273, 488, 975
BssMI GATC 6 cut(s) 15, 31, 222, 267, 291, 1348
BssT1I CCWWGG 2 cut(s) 488, 975
Bst4CI ACNGT 1 cut(s) 1364
Bst6I CTCTTC 2 cut(s) 1299, 1325
BstAUI TGTACA 1 cut(s) 49
BstBI TTCGAA 1 cut(s) 741
BstC8I GCNNGC 5 cut(s) 413, 717, 831, 876, 1002
BstDEI CTNAG 6 cut(s) 103, 514, 525, 683, 1013, 1095
BstDSI CCRYGG 1 cut(s) 975
BstF5I GGATG 2 cut(s) 296, 942
BstFNI CGCG 2 cut(s) 212, 310
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 6 cut(s) 18, 34, 225, 270, 294, 1351
BstMAI GTCTC 3 cut(s) 353, 1277, 1301
BstMBI GATC 6 cut(s) 15, 31, 222, 267, 291, 1348
BstMCI CGRYCG 1 cut(s) 111
BstMWI GCNNNNNNNGC 2 cut(s) 240, 421
BstNSI RCATGY 1 cut(s) 749
BstSCI CCNGG 2 cut(s) 68, 273
BstSFI CTRYAG 1 cut(s) 285
BstSLI GKGCMC 2 cut(s) 236, 1123
BstUI CGCG 2 cut(s) 212, 310
BstV1I GCAGC 2 cut(s) 271, 1153
BstX2I RGATCY 2 cut(s) 31, 291
BstXI CCANNNNNNTGG 1 cut(s) 1080
BstYI RGATCY 2 cut(s) 31, 291
BstZI CGGCCG 1 cut(s) 108
Bsu36I CCTNAGG 1 cut(s) 683
BsuI GTATCC 1 cut(s) 359
BsuRI GGCC 5 cut(s) 110, 202, 688, 1072, 1220
BtgI CCRYGG 1 cut(s) 975
BtgZI GCGATG 1 cut(s) 291
BtsCI GGATG 2 cut(s) 296, 942
BtsI GCAGTG 2 cut(s) 927, 1038
BtsIMutI CAGTG 5 cut(s) 49, 927, 1038, 1092, 1369
Cac8I GCNNGC 5 cut(s) 413, 717, 831, 876, 1002
CciI TCATGA 2 cut(s) 21, 264
CfoI GCGC 1 cut(s) 89
Cfr13I GGNCC 5 cut(s) 99, 200, 214, 1070, 1218
Csp6I GTAC 2 cut(s) 50, 315
CviAII CATG 5 cut(s) 22, 265, 746, 976, 1080
CviQI GTAC 2 cut(s) 50, 315
DdeI CTNAG 6 cut(s) 103, 514, 525, 683, 1013, 1095
DpnI GATC 6 cut(s) 17, 33, 224, 269, 293, 1350
DpnII GATC 6 cut(s) 15, 31, 222, 267, 291, 1348
EaeI YGGCCR 1 cut(s) 108
EagI CGGCCG 1 cut(s) 108
Eam1104I CTCTTC 2 cut(s) 1299, 1325
EarI CTCTTC 2 cut(s) 1299, 1325
EclXI CGGCCG 1 cut(s) 108
Eco130I CCWWGG 2 cut(s) 488, 975
Eco24I GRGCYC 2 cut(s) 357, 1012
Eco32I GATATC 1 cut(s) 1242
Eco47I GGWCC 2 cut(s) 99, 214
Eco52I CGGCCG 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 1306
Eco81I CCTNAGG 1 cut(s) 683
Eco88I CYCGRG 1 cut(s) 350
EcoO109I RGGNCCY 2 cut(s) 99, 1218
EcoRV GATATC 1 cut(s) 1242
EcoT14I CCWWGG 2 cut(s) 488, 975
EcoT38I GRGCYC 2 cut(s) 357, 1012
ErhI CCWWGG 2 cut(s) 488, 975
Esp3I CGTCTC 1 cut(s) 1301
FaeI CATG 5 cut(s) 25, 268, 749, 979, 1083
FaqI GGGAC 3 cut(s) 425, 469, 1141
FatI CATG 5 cut(s) 21, 264, 745, 975, 1079
FauI CCCGC 2 cut(s) 303, 925
FbaI TGATCA 1 cut(s) 1348
Fnu4HI GCNGC 4 cut(s) 108, 285, 720, 1167
FokI GGATG 2 cut(s) 283, 949
FriOI GRGCYC 2 cut(s) 357, 1012
Fsp4HI GCNGC 4 cut(s) 108, 285, 720, 1167
FspBI CTAG 5 cut(s) 92, 716, 810, 1131, 1356
GlaI GCGC 1 cut(s) 88
GluI GCNGC 4 cut(s) 108, 285, 720, 1167
GsaI CCCAGC 2 cut(s) 446, 804
GsuI CTGGAG 1 cut(s) 456
HaeIII GGCC 5 cut(s) 110, 202, 688, 1072, 1220
HapII CCGG 5 cut(s) 69, 111, 275, 332, 703
HhaI GCGC 1 cut(s) 89
Hin1II CATG 5 cut(s) 25, 268, 749, 979, 1083
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HincII GTYRAC 1 cut(s) 921
HindII GTYRAC 1 cut(s) 921
HinfI GANTC 6 cut(s) 60, 438, 466, 482, 691, 761
HpaII CCGG 5 cut(s) 69, 111, 275, 332, 703
Hpy166II GTNNAC 5 cut(s) 234, 317, 921, 1087, 1150
Hpy188I TCNGA 6 cut(s) 59, 124, 365, 728, 783, 888
Hpy188III TCNNGA 8 cut(s) 22, 265, 581, 631, 682, 703, 793, 1356
Hpy8I GTNNAC 5 cut(s) 234, 317, 921, 1087, 1150
Hpy99I CGWCG 1 cut(s) 141
HpyAV CCTTC 3 cut(s) 653, 1231, 1287
HpyCH4III ACNGT 1 cut(s) 1364
HpyCH4V TGCA 6 cut(s) 234, 260, 287, 505, 749, 1235
HpyF10VI GCNNNNNNNGC 2 cut(s) 240, 421
HpyF3I CTNAG 6 cut(s) 103, 514, 525, 683, 1013, 1095
Hsp92II CATG 5 cut(s) 25, 268, 749, 979, 1083
HspAI GCGC 1 cut(s) 87
Kpn2I TCCGGA 1 cut(s) 702
Ksp22I TGATCA 1 cut(s) 1348
Kzo9I GATC 6 cut(s) 15, 31, 222, 267, 291, 1348
LguI GCTCTTC 1 cut(s) 1325
LmnI GCTCC 3 cut(s) 8, 334, 997
Lsp1109I GCAGC 2 cut(s) 271, 1153
LweI GCATC 2 cut(s) 411, 492
MaeI CTAG 5 cut(s) 92, 716, 810, 1131, 1356
MaeIII GTNAC 3 cut(s) 140, 805, 850
MalI GATC 6 cut(s) 17, 33, 224, 269, 293, 1350
MboI GATC 6 cut(s) 15, 31, 222, 267, 291, 1348
MboII GAAGA 8 cut(s) 10, 41, 126, 730, 1045, 1255, 1312, 1316
MfeI CAATTG 1 cut(s) 447
MflI RGATCY 2 cut(s) 31, 291
MhlI GDGCHC 5 cut(s) 236, 357, 929, 1012, 1123
MlyI GAGTC 4 cut(s) 69, 447, 491, 700
MmeI TCCRAC 3 cut(s) 37, 516, 1348
MroI TCCGGA 1 cut(s) 702
MseI TTAA 1 cut(s) 77
MslI CAYNNNNRTG 1 cut(s) 248
MspI CCGG 5 cut(s) 69, 111, 275, 332, 703
MspR9I CCNGG 2 cut(s) 70, 275
MunI CAATTG 1 cut(s) 447
MvnI CGCG 2 cut(s) 212, 310
MwoI GCNNNNNNNGC 2 cut(s) 240, 421
NciI CCSGG 2 cut(s) 70, 275
NcoI CCATGG 1 cut(s) 975
NdeII GATC 6 cut(s) 15, 31, 222, 267, 291, 1348
NheI GCTAGC 1 cut(s) 715
NlaIII CATG 5 cut(s) 25, 268, 749, 979, 1083
NlaIV GGNNCC 2 cut(s) 100, 1219
NmeAIII GCCGAG 1 cut(s) 714
NspI RCATGY 1 cut(s) 749
NspV TTCGAA 1 cut(s) 741
PagI TCATGA 2 cut(s) 21, 264
PciSI GCTCTTC 1 cut(s) 1325
PcsI WCGNNNNNNNCGW 1 cut(s) 615
PfeI GAWTC 2 cut(s) 466, 761
PkrI GCNGC 4 cut(s) 109, 286, 721, 1168
PleI GAGTC 4 cut(s) 68, 446, 490, 699
PpsI GAGTC 4 cut(s) 68, 446, 490, 699
PpuMI RGGWCCY 1 cut(s) 99
PsiI TTATAA 2 cut(s) 1160, 1197
Psp5II RGGWCCY 1 cut(s) 99
PspFI CCCAGC 2 cut(s) 442, 800
PspN4I GGNNCC 2 cut(s) 100, 1219
PspPI GGNCC 5 cut(s) 99, 200, 214, 1070, 1218
PspPPI RGGWCCY 1 cut(s) 99
PstI CTGCAG 1 cut(s) 289
PsuI RGATCY 2 cut(s) 31, 291
RsaI GTAC 2 cut(s) 51, 316
RsaNI GTAC 2 cut(s) 50, 315
RseI CAYNNNNRTG 1 cut(s) 248
SapI GCTCTTC 1 cut(s) 1325
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 4 cut(s) 108, 285, 720, 1167
Sau3AI GATC 6 cut(s) 15, 31, 222, 267, 291, 1348
Sau96I GGNCC 5 cut(s) 99, 200, 214, 1070, 1218
SchI GAGTC 4 cut(s) 69, 447, 491, 700
ScrFI CCNGG 2 cut(s) 70, 275
SduI GDGCHC 5 cut(s) 236, 357, 929, 1012, 1123
SfaNI GCATC 2 cut(s) 411, 492
SfcI CTRYAG 1 cut(s) 285
SfuI TTCGAA 1 cut(s) 741
SinI GGWCC 2 cut(s) 99, 214
SmiMI CAYNNNNRTG 1 cut(s) 248
SmlI CTYRAG 1 cut(s) 567
SmoI CTYRAG 1 cut(s) 567
SpeI ACTAGT 1 cut(s) 1130
SsiI CCGC 5 cut(s) 107, 212, 310, 719, 932
SspMI CTAG 5 cut(s) 92, 716, 810, 1131, 1356
StyD4I CCNGG 2 cut(s) 68, 273
StyI CCWWGG 2 cut(s) 488, 975
TaaI ACNGT 1 cut(s) 1364
TaqI TCGA 2 cut(s) 652, 741
TatI WGTACW 1 cut(s) 49
TauI GCSGC 2 cut(s) 110, 722
TfiI GAWTC 2 cut(s) 466, 761
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TscAI CASTG 5 cut(s) 49, 934, 1038, 1099, 1369
TseI GCWGC 2 cut(s) 284, 1166
TspDTI ATGAA 3 cut(s) 10, 38, 1174
TspGWI ACGGA 2 cut(s) 754, 1325
TspRI CASTG 5 cut(s) 49, 934, 1038, 1099, 1369
VneI GTGCAC 1 cut(s) 232
VpaK11BI GGWCC 2 cut(s) 99, 214
XapI RAATTY 1 cut(s) 786
XbaI TCTAGA 1 cut(s) 1355
XceI RCATGY 1 cut(s) 749
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
XspI CTAG 5 cut(s) 92, 716, 810, 1131, 1356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.