Rorug02G0103700
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014399
Physical Location & Seq
Forward (+)
8850629 .. 8852879
2251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0103700.1

Sequence Viewer

Length: 885 bp
ATGGCGCGAAGAGTAATGGAATGGGCGGGTCGGGCCGATTACATGGGCGGCATTCCAAGGAAGATAGTGATCGGAGCCGTCGGAAGCTTCGCGAAGGCCTGGGTCACCATTCTCAACTCCACCACCGTTCACAATGCGGATACGCTTCTTAACCTAGTCCGCTCTCGCCCTATTGGCCTCCCTCTCATCACTGTAAGCAACCACATGTCCACTCTAGACGACCCGTTTCTGTGGGGTTTCAAGGGCTTTCCGATTTGTGATGCCAATTTGTCGCGGTGGGTTTTGGCCGCAGAGGACATCTGCTTCAAAAGCTCGCCGCTTTCGTACTTTTTCCGGCTTGGGAAGTGTATACCGATTACGAGAGGCGCTGGGATTTATCAGGAGCATATGAATGAAGCTCTTGAAAGATTGAGTGAAGGAGCCTGGTTGCACACTTTTCCTGAAGGAAAAGTGTATCAGGAAGATGCACCTATAAGAAGATTGAAATGGGGGACTGCTAGTCTCATTGCTCGTGCTCCAGTAACCCCAATAGTTTTGCCAATTGTACATAGTGGGTTTGACAAGGTGATGCCTGACAAATCTTCTCGTGGTAAAAGGCCTCCCTTTCCATTGCTTAATAAGGAAATTAATATAATTGTTGGGGAGCCAATGGAATTTGACATACCTAGAATGAGGCAGGTGGCTACCTCTCTGTCCCCTAAAATGTCACATCCTTCTTTAGGATGGCCAAGCCTTTGCCCAGGTGGTTTGGATGAGGCAGCACAGAGATGTCTGTACGGTGCAATTTCAGAGAAAATCCAAAATGCCTTGGAGAGATTACGAATTTTTGTATGGAATGCCATCTCTTTTCTCGAGGCTTCAATCACTTACCAAGTTCAGTTTTAA

Protein Analysis

294

Amino Acids

32.84

Weight (kDa)

9.24

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransferase PF01553 43 - 183 9.8e-17 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014399)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18480 AT4G36670
fragaria_vesca FvH4_1g13630
malus_domestica MD02G1151000.v1.1 MD15G1265500.v1.1
prunus_persica Prupe.7G152100_v2.0.a1
pyrus_communis pycom15g23120
rosa_chinensis RchiOBHm_Chr2g0101981
rosa_laevigata RLG00000017122
rosa_multiflora Rmu_sc0020823.1_g000008
rosa_roxburghii Rroxscaffold_2G00140870
rosa_rugosa Rorug02G0103700
rosa_samantha Rh2AG151700 Rh2BG157100 Rh2CG157100 Rh2DG157200
rosa_wichuraiana Rw2G011840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 667
Acc36I ACCTGC 1 cut(s) 667
AccBSI CCGCTC 1 cut(s) 162
AccI GTMKAC 1 cut(s) 349
AccII CGCG 3 cut(s) 7, 92, 274
AciI CCGC 7 cut(s) 26, 48, 137, 160, 274, 288, 317
AcoI YGGCCR 2 cut(s) 285, 725
AcsI RAATTY 2 cut(s) 653, 822
AcuI CTGAAG 1 cut(s) 462
AfaI GTAC 3 cut(s) 326, 546, 776
AfiI CCNNNNNNNGG 1 cut(s) 719
AflIII ACRYGT 1 cut(s) 204
AgsI TTSAA 5 cut(s) 241, 307, 404, 484, 861
AhdI GACNNNNNGTC 1 cut(s) 498
AjnI CCWGG 3 cut(s) 98, 422, 739
AluBI AGCT 3 cut(s) 87, 312, 398
AluI AGCT 3 cut(s) 87, 312, 398
Alw21I GWGCWC 1 cut(s) 517
Alw26I GTCTC 1 cut(s) 506
Ama87I CYCGRG 1 cut(s) 851
AoxI GGCC 6 cut(s) 33, 96, 175, 285, 596, 725
ApeKI GCWGC 1 cut(s) 758
ApoI RAATTY 2 cut(s) 653, 822
AseI ATTAAT 1 cut(s) 627
AspLEI GCGC 2 cut(s) 7, 368
AspS9I GGNCC 1 cut(s) 33
AsuHPI GGTGA 2 cut(s) 97, 577
AvaI CYCGRG 1 cut(s) 851
BalI TGGCCA 1 cut(s) 727
BauI CACGAG 2 cut(s) 510, 585
Bbv12I GWGCWC 1 cut(s) 517
BbvI GCAGC 1 cut(s) 770
BccI CCATC 2 cut(s) 717, 848
BceAI ACGGC 1 cut(s) 62
BciT130I CCWGG 3 cut(s) 100, 424, 741
BciVI GTATCC 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 506
BfaI CTAG 4 cut(s) 155, 215, 498, 666
BfoI RGCGCY 1 cut(s) 369
BfuAI ACCTGC 1 cut(s) 667
BfuI GTATCC 1 cut(s) 133
BglI GCCNNNNNGGC 1 cut(s) 174
BisI GCNGC 4 cut(s) 49, 288, 317, 759
BlsI GCNGC 4 cut(s) 50, 289, 318, 760
Bme1390I CCNGG 3 cut(s) 100, 424, 741
BmeRI GACNNNNNGTC 1 cut(s) 498
BmeT110I CYCGRG 1 cut(s) 851
BmgT120I GGNCC 1 cut(s) 33
BmiI GGNNCC 3 cut(s) 76, 421, 645
BmrFI CCNGG 3 cut(s) 100, 424, 741
BmsI GCATC 3 cut(s) 250, 454, 558
BpmI CTGGAG 1 cut(s) 501
BsaBI GATNNNNATC 1 cut(s) 68
BsaJI CCNNGG 4 cut(s) 56, 99, 739, 807
Bsc4I CCNNNNNNNGG 1 cut(s) 719
Bse1I ACTGG 1 cut(s) 518
Bse3DI GCAATG 2 cut(s) 504, 608
Bse8I GATNNNNATC 1 cut(s) 68
BseBI CCWGG 3 cut(s) 100, 424, 741
BseDI CCNNGG 4 cut(s) 56, 99, 739, 807
BseGI GGATG 3 cut(s) 709, 728, 757
BseJI GATNNNNATC 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 719
BseMI GCAATG 2 cut(s) 504, 608
BseNI ACTGG 1 cut(s) 518
BseXI GCAGC 1 cut(s) 770
BseYI CCCAGC 1 cut(s) 368
Bsh1236I CGCG 3 cut(s) 7, 92, 274
BshFI GGCC 6 cut(s) 35, 98, 177, 287, 598, 727
BsiHKAI GWGCWC 1 cut(s) 517
BsiHKCI CYCGRG 1 cut(s) 851
BsiSI CCGG 1 cut(s) 334
BslFI GGGAC 2 cut(s) 505, 679
BslI CCNNNNNNNGG 1 cut(s) 719
BsmAI GTCTC 1 cut(s) 506
BsmFI GGGAC 2 cut(s) 505, 679
BsmI GAATGC 2 cut(s) 51, 841
BsnI GGCC 6 cut(s) 35, 98, 177, 287, 598, 727
BsoBI CYCGRG 1 cut(s) 851
Bsp1286I GDGCHC 1 cut(s) 517
Bsp1407I TGTACA 1 cut(s) 544
Bsp143I GATC 1 cut(s) 69
Bsp68I TCGCGA 1 cut(s) 92
BspACI CCGC 7 cut(s) 26, 48, 137, 160, 274, 288, 317
BspANI GGCC 6 cut(s) 35, 98, 177, 287, 598, 727
BspFNI CGCG 3 cut(s) 7, 92, 274
BspLI GGNNCC 3 cut(s) 76, 421, 645
BspMI ACCTGC 1 cut(s) 667
BsrBI CCGCTC 1 cut(s) 162
BsrDI GCAATG 2 cut(s) 504, 608
BsrGI TGTACA 1 cut(s) 544
BsrI ACTGG 1 cut(s) 518
BssECI CCNNGG 4 cut(s) 56, 99, 739, 807
BssMI GATC 1 cut(s) 69
BssNAI GTATAC 1 cut(s) 350
BssSI CACGAG 2 cut(s) 510, 585
BssT1I CCWWGG 2 cut(s) 56, 807
Bst1107I GTATAC 1 cut(s) 350
Bst2BI CACGAG 2 cut(s) 510, 585
Bst2UI CCWGG 3 cut(s) 100, 424, 741
Bst4CI ACNGT 3 cut(s) 127, 193, 779
Bst6I CTCTTC 1 cut(s) 4
BstAUI TGTACA 1 cut(s) 544
BstC8I GCNNGC 1 cut(s) 314
BstEII GGTNACC 1 cut(s) 103
BstENI CCTNNNNNAGG 1 cut(s) 717
BstF5I GGATG 3 cut(s) 709, 728, 757
BstFNI CGCG 3 cut(s) 7, 92, 274
BstH2I RGCGCY 1 cut(s) 369
BstHHI GCGC 2 cut(s) 7, 368
BstKTI GATC 1 cut(s) 72
BstMAI GTCTC 1 cut(s) 506
BstMBI GATC 1 cut(s) 69
BstMWI GCNNNNNNNGC 3 cut(s) 32, 174, 309
BstNI CCWGG 3 cut(s) 100, 424, 741
BstNSI RCATGY 1 cut(s) 208
BstPI GGTNACC 1 cut(s) 103
BstSCI CCNGG 3 cut(s) 98, 422, 739
BstUI CGCG 3 cut(s) 7, 92, 274
BstV1I GCAGC 1 cut(s) 770
BstZ17I GTATAC 1 cut(s) 350
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 6 cut(s) 35, 98, 177, 287, 598, 727
BtsCI GGATG 3 cut(s) 709, 728, 757
BtsIMutI CAGTG 1 cut(s) 189
BtuMI TCGCGA 1 cut(s) 92
BveI ACCTGC 1 cut(s) 667
Cac8I GCNNGC 1 cut(s) 314
CfoI GCGC 2 cut(s) 7, 368
Cfr13I GGNCC 1 cut(s) 33
Csp6I GTAC 3 cut(s) 325, 545, 775
CviAII CATG 2 cut(s) 43, 205
CviQI GTAC 3 cut(s) 325, 545, 775
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
DriI GACNNNNNGTC 1 cut(s) 498
EaeI YGGCCR 2 cut(s) 285, 725
Eam1104I CTCTTC 1 cut(s) 4
Eam1105I GACNNNNNGTC 1 cut(s) 498
EarI CTCTTC 1 cut(s) 4
Eco130I CCWWGG 2 cut(s) 56, 807
Eco147I AGGCCT 2 cut(s) 98, 598
Eco57I CTGAAG 1 cut(s) 462
Eco88I CYCGRG 1 cut(s) 851
Eco91I GGTNACC 1 cut(s) 103
EcoNI CCTNNNNNAGG 1 cut(s) 717
EcoO65I GGTNACC 1 cut(s) 103
EcoRII CCWGG 3 cut(s) 98, 422, 739
EcoT14I CCWWGG 2 cut(s) 56, 807
ErhI CCWWGG 2 cut(s) 56, 807
FaeI CATG 2 cut(s) 46, 208
FaqI GGGAC 2 cut(s) 505, 679
FatI CATG 2 cut(s) 42, 204
FauI CCCGC 1 cut(s) 19
FauNDI CATATG 1 cut(s) 387
FblI GTMKAC 1 cut(s) 349
Fnu4HI GCNGC 4 cut(s) 49, 288, 317, 759
FokI GGATG 3 cut(s) 696, 735, 764
Fsp4HI GCNGC 4 cut(s) 49, 288, 317, 759
FspBI CTAG 4 cut(s) 155, 215, 498, 666
GlaI GCGC 2 cut(s) 6, 367
GluI GCNGC 4 cut(s) 49, 288, 317, 759
GsaI CCCAGC 1 cut(s) 372
GsuI CTGGAG 1 cut(s) 501
HaeII RGCGCY 1 cut(s) 369
HaeIII GGCC 6 cut(s) 35, 98, 177, 287, 598, 727
HapII CCGG 1 cut(s) 334
HhaI GCGC 2 cut(s) 7, 368
Hin1II CATG 2 cut(s) 46, 208
Hin6I GCGC 2 cut(s) 5, 366
HinP1I GCGC 2 cut(s) 5, 366
HindIII AAGCTT 1 cut(s) 85
HpaII CCGG 1 cut(s) 334
HphI GGTGA 2 cut(s) 97, 577
Hpy166II GTNNAC 3 cut(s) 130, 210, 350
Hpy188I TCNGA 4 cut(s) 74, 83, 252, 790
Hpy188III TCNNGA 7 cut(s) 91, 215, 380, 401, 440, 458, 851
Hpy8I GTNNAC 3 cut(s) 130, 210, 350
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 4 cut(s) 88, 410, 437, 723
HpyCH4III ACNGT 3 cut(s) 127, 193, 779
HpyCH4V TGCA 3 cut(s) 430, 467, 782
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 174, 309
Hsp92II CATG 2 cut(s) 46, 208
HspAI GCGC 2 cut(s) 5, 366
Kzo9I GATC 1 cut(s) 69
LmnI GCTCC 5 cut(s) 74, 382, 419, 520, 643
Lsp1109I GCAGC 1 cut(s) 770
LweI GCATC 3 cut(s) 250, 454, 558
MaeI CTAG 4 cut(s) 155, 215, 498, 666
MaeIII GTNAC 3 cut(s) 103, 520, 705
MalI GATC 1 cut(s) 71
MbiI CCGCTC 1 cut(s) 162
MboI GATC 1 cut(s) 69
MboII GAAGA 5 cut(s) 21, 73, 473, 489, 573
MfeI CAATTG 1 cut(s) 540
MhlI GDGCHC 1 cut(s) 517
MlsI TGGCCA 1 cut(s) 727
MluCI AATT 7 cut(s) 265, 540, 624, 633, 653, 783, 822
MluNI TGGCCA 1 cut(s) 727
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 9 cut(s) 188, 192, 286, 356, 609, 666, 697, 748, 847
Mox20I TGGCCA 1 cut(s) 727
MscI TGGCCA 1 cut(s) 727
MseI TTAA 4 cut(s) 150, 615, 627, 883
MslI CAYNNNNRTG 2 cut(s) 390, 766
Msp20I TGGCCA 1 cut(s) 727
MspI CCGG 1 cut(s) 334
MspR9I CCNGG 3 cut(s) 100, 424, 741
MunI CAATTG 1 cut(s) 540
Mva1269I GAATGC 2 cut(s) 51, 841
MvaI CCWGG 3 cut(s) 100, 424, 741
MvnI CGCG 3 cut(s) 7, 92, 274
MwoI GCNNNNNNNGC 3 cut(s) 32, 174, 309
NdeI CATATG 1 cut(s) 387
NdeII GATC 1 cut(s) 69
NlaIII CATG 2 cut(s) 46, 208
NlaIV GGNNCC 3 cut(s) 76, 421, 645
NmuCI GTSAC 2 cut(s) 103, 705
NruI TCGCGA 1 cut(s) 92
NspI RCATGY 1 cut(s) 208
PaeR7I CTCGAG 1 cut(s) 851
PaqCI CACCTGC 1 cut(s) 667
PceI AGGCCT 2 cut(s) 98, 598
PciI ACATGT 1 cut(s) 204
PcsI WCGNNNNNNNCGW 1 cut(s) 320
PctI GAATGC 2 cut(s) 51, 841
PkrI GCNGC 4 cut(s) 50, 289, 318, 760
PscI ACATGT 1 cut(s) 204
PshBI ATTAAT 1 cut(s) 627
Psp6I CCWGG 3 cut(s) 98, 422, 739
PspEI GGTNACC 1 cut(s) 103
PspFI CCCAGC 1 cut(s) 368
PspGI CCWGG 3 cut(s) 98, 422, 739
PspN4I GGNNCC 3 cut(s) 76, 421, 645
PspPI GGNCC 1 cut(s) 33
RruI TCGCGA 1 cut(s) 92
RsaI GTAC 3 cut(s) 326, 546, 776
RsaNI GTAC 3 cut(s) 325, 545, 775
RseI CAYNNNNRTG 2 cut(s) 390, 766
SaqAI TTAA 4 cut(s) 150, 615, 627, 883
SatI GCNGC 4 cut(s) 49, 288, 317, 759
Sau3AI GATC 1 cut(s) 69
Sau96I GGNCC 1 cut(s) 33
ScrFI CCNGG 3 cut(s) 100, 424, 741
SduI GDGCHC 1 cut(s) 517
SfaNI GCATC 3 cut(s) 250, 454, 558
Sfr274I CTCGAG 1 cut(s) 851
SlaI CTCGAG 1 cut(s) 851
SmiMI CAYNNNNRTG 2 cut(s) 390, 766
SmlI CTYRAG 1 cut(s) 851
SmoI CTYRAG 1 cut(s) 851
Sse9I AATT 7 cut(s) 265, 540, 624, 633, 653, 783, 822
SseBI AGGCCT 2 cut(s) 98, 598
SsiI CCGC 7 cut(s) 26, 48, 137, 160, 274, 288, 317
SspMI CTAG 4 cut(s) 155, 215, 498, 666
StuI AGGCCT 2 cut(s) 98, 598
StyD4I CCNGG 3 cut(s) 98, 422, 739
StyI CCWWGG 2 cut(s) 56, 807
TaaI ACNGT 3 cut(s) 127, 193, 779
TaqI TCGA 1 cut(s) 852
TasI AATT 7 cut(s) 265, 540, 624, 633, 653, 783, 822
TatI WGTACW 1 cut(s) 544
TauI GCSGC 3 cut(s) 51, 290, 319
Tru1I TTAA 4 cut(s) 150, 615, 627, 883
Tru9I TTAA 4 cut(s) 150, 615, 627, 883
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 2 cut(s) 103, 705
TseI GCWGC 1 cut(s) 758
Tsp45I GTSAC 2 cut(s) 103, 705
TspDTI ATGAA 2 cut(s) 404, 408
TspRI CASTG 1 cut(s) 196
VspI ATTAAT 1 cut(s) 627
XagI CCTNNNNNAGG 1 cut(s) 717
XapI RAATTY 2 cut(s) 653, 822
XbaI TCTAGA 1 cut(s) 214
XceI RCATGY 1 cut(s) 208
XhoI CTCGAG 1 cut(s) 851
XmiI GTMKAC 1 cut(s) 349
XspI CTAG 4 cut(s) 155, 215, 498, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.