Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0018577

Physical Location & Seq

Genomic Coordinates Reverse (-)

79895577 .. 79897849

Gene Structure 2273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00141690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAAAGGTCTCAAGTCTGCAACCGTCGCGAGCAAGAAGCCTGTTGCTGAGTTGCTGAGAGCCAAGGCTGAACCAAAAAAGACGATGAAGAAGGAGAAAGTTCAGAAAGTAAGCAAGAAGAAGGATGCTGATGCTCCGAAGCGTCCAGCTGGAGCCTTCTTCATCTTCATGGAGGAGTTCCGCAAGAGCTTCAAACTGGAGTTTCCTGATGCAAAATCTGGACCGGCTGAAAAAGCAACCTATGTCGAAAAAGCTTCAAAGAGGAAGGCAGAGTATGAAATAGCTATGCAGGAATATGAGAAGAAGAAGCTGAATTGCAATGTGGATGCTGAAAAGTCAGTGGTTACAGAGAAATCGGCTTCAGCTTGTGAGATCCATGATGATGAAGCGGGGCAGGAAGTGAGCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006333 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030527 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

136

Amino Acids

15.16

Weight (kDa)

9.36

Isoelectric Point (pI)

30.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018577)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0100971
rosa_laevigata	RLG00000017032
rosa_multiflora	Rmu_co8514483.1_g000002
rosa_roxburghii	Rroxscaffold_2G00141690
rosa_rugosa	Rorug02G0094500
rosa_samantha	Rh2AG141800 Rh2BG147000 Rh2CG148300 Rh2DG147500
rosa_wichuraiana	Rw2G011130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	29
AciI	CCGC	2 cut(s)	181, 389
AclWI	GGATC	1 cut(s)	367
AcuI	CTGAAG	1 cut(s)	345
AgsI	TTSAA	2 cut(s)	193, 258
AluBI	AGCT	7 cut(s)	149, 189, 254, 284, 310, 365, 405
AluI	AGCT	7 cut(s)	149, 189, 254, 284, 310, 365, 405
Alw21I	GWGCWC	1 cut(s)	407
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	1 cut(s)	367
AspS9I	GGNCC	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	407
Bbv12I	GWGCWC	1 cut(s)	407
BcoDI	GTCTC	1 cut(s)	14
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	154
BmsI	GCATC	4 cut(s)	115, 121, 199, 316
BpmI	CTGGAG	2 cut(s)	171, 218
BsaI	GGTCTC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	63
Bse118I	RCCGGY	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	201
Bse3DI	GCAATG	1 cut(s)	325
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	2 cut(s)	130, 331
BseMI	GCAATG	1 cut(s)	325
BseMII	CTCAG	2 cut(s)	39, 47
BseNI	ACTGG	1 cut(s)	201
BseRI	GAGGAG	1 cut(s)	188
Bsh1236I	CGCG	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	407
BsiSI	CCGG	1 cut(s)	224
BsmAI	GTCTC	1 cut(s)	14
Bso31I	GGTCTC	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	407
Bsp143I	GATC	1 cut(s)	372
Bsp68I	TCGCGA	1 cut(s)	29
BspACI	CCGC	2 cut(s)	181, 389
BspCNI	CTCAG	2 cut(s)	40, 48
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	154
BspPI	GGATC	1 cut(s)	367
BspTNI	GGTCTC	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	325
BsrFI	RCCGGY	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	201
BssAI	RCCGGY	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	1 cut(s)	372
BssT1I	CCWWGG	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	31
BstDEI	CTNAG	3 cut(s)	48, 56, 408
BstF5I	GGATG	2 cut(s)	130, 331
BstFNI	CGCG	1 cut(s)	29
BstKTI	GATC	1 cut(s)	375
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	1 cut(s)	372
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 233
BstUI	CGCG	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	372
BstYI	RGATCY	1 cut(s)	372
BtsCI	GGATG	2 cut(s)	130, 331
BtsIMutI	CAGTG	1 cut(s)	345
BtuMI	TCGCGA	1 cut(s)	29
Cac8I	GCNNGC	1 cut(s)	31
Cfr10I	RCCGGY	1 cut(s)	223
Cfr13I	GGNCC	1 cut(s)	221
CseI	GACGC	1 cut(s)	131
CviAII	CATG	2 cut(s)	169, 377
DdeI	CTNAG	3 cut(s)	48, 56, 408
DpnI	GATC	1 cut(s)	374
DpnII	GATC	1 cut(s)	372
Ecl136II	GAGCTC	1 cut(s)	405
Eco130I	CCWWGG	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	407
Eco31I	GGTCTC	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	405
Eco57I	CTGAAG	1 cut(s)	345
EcoICRI	GAGCTC	1 cut(s)	405
EcoT14I	CCWWGG	1 cut(s)	63
EcoT38I	GRGCYC	1 cut(s)	407
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	2 cut(s)	172, 380
FaiI	YATR	6 cut(s)	170, 243, 276, 287, 297, 378
FatI	CATG	2 cut(s)	168, 376
FauI	CCCGC	1 cut(s)	382
FokI	GGATG	2 cut(s)	137, 338
FriOI	GRGCYC	1 cut(s)	407
GsuI	CTGGAG	2 cut(s)	171, 218
HapII	CCGG	1 cut(s)	224
HgaI	GACGC	1 cut(s)	131
Hin1II	CATG	2 cut(s)	172, 380
HindIII	AAGCTT	1 cut(s)	252
HpaII	CCGG	1 cut(s)	224
Hpy188I	TCNGA	2 cut(s)	105, 138
Hpy188III	TCNNGA	3 cut(s)	28, 206, 219
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	4 cut(s)	85, 115, 166, 259
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	4 cut(s)	20, 212, 289, 318
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 233
HpyF3I	CTNAG	3 cut(s)	48, 56, 408
Hsp92II	CATG	2 cut(s)	172, 380
Kzo9I	GATC	1 cut(s)	372
LmnI	GCTCC	2 cut(s)	139, 152
LpnPI	CCDG	9 cut(s)	54, 135, 159, 182, 204, 219, 237, 275, 380
LweI	GCATC	4 cut(s)	115, 121, 199, 316
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	1 cut(s)	374
MboI	GATC	1 cut(s)	372
MboII	GAAGA	6 cut(s)	100, 130, 151, 157, 313, 316
MflI	RGATCY	1 cut(s)	372
MhlI	GDGCHC	1 cut(s)	407
MluCI	AATT	1 cut(s)	313
MnlI	CCTC	2 cut(s)	166, 255
MslI	CAYNNNNRTG	2 cut(s)	167, 381
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	1 cut(s)	224
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	2 cut(s)	26, 233
NdeII	GATC	1 cut(s)	372
NlaIII	CATG	2 cut(s)	172, 380
NlaIV	GGNNCC	1 cut(s)	154
NruI	TCGCGA	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	407
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	372
PvuII	CAGCTG	1 cut(s)	149
RruI	TCGCGA	1 cut(s)	29
RseI	CAYNNNNRTG	2 cut(s)	167, 381
SacI	GAGCTC	1 cut(s)	407
Sau3AI	GATC	1 cut(s)	372
Sau96I	GGNCC	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	407
SetI	ASST	9 cut(s)	10, 151, 191, 242, 256, 286, 312, 367, 407
SfaNI	GCATC	4 cut(s)	115, 121, 199, 316
SinI	GGWCC	1 cut(s)	221
SmiMI	CAYNNNNRTG	2 cut(s)	167, 381
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	1 cut(s)	313
SsiI	CCGC	2 cut(s)	181, 389
SstI	GAGCTC	1 cut(s)	407
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	1 cut(s)	246
TasI	AATT	1 cut(s)	313
TscAI	CASTG	1 cut(s)	345
TspDTI	ATGAA	6 cut(s)	17, 101, 151, 157, 291, 399
TspRI	CASTG	1 cut(s)	345
VpaK11BI	GGWCC	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.