Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0018577

Physical Location & Seq

Genomic Coordinates Forward (+)

11285922 .. 11287994

Gene Structure 2073 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G011130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAAAGGTCTCAAGTCTGCAACCGTCGCGAGCACGAAGCCTGTTGCTGAGTTGCTGGGAGCCAAGGCTGAACCAAAAAAGACGATGAAGAAGGAGAAAGTTCAGAAAGTAAGCAAGAAGAAGGATGCTGATGCTCCGAAGCGTCCAGCTGGAGCCTTCTTCATCTTCATGGAGGAGTTCCGCAAGAGCTTCAAACTGGAGTTTCCTGATGCAAAATCTGGACCGACTGTTGGGAAAGCTGGTGGTGAGAAATGGAAGTCACTGTCTGCTACTGAAAAAGCTCCCTATGTCGAAAAAGCTTCAAAGAGGAAGGCGGAGTATGAAATAGCTATGCAGGAATATGAGAAGAAGAAGCTGAATTGCAATGCGGATGCTGAAAAATCAGTGGTGACAGAGAAATCGGCTTCAGCTTGTGAGATCCATGATGATGAAGCGGGGCAGGAAGCTACTTGGGGCAGGAAGTTTACTGAGGTGAATAAAGATGTCAGAGGATGTTCTACGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006333 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030527 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 ko04140 ko04217 map03410 map04140 map04217

Pfam Domains

Protein Families

HMG_box

Protein Analysis

168

Amino Acids

18.55

Weight (kDa)

9.4

Isoelectric Point (pI)

25.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG_box	PF00505	46 - 115	6.4e-20	HMG (high mobility group) box
HMG_box_2	PF09011	46 - 114	4.8e-10	HMG-box domain
HMG_WDHD1	PF24815	49 - 99	9.6e-11	WDHD1 HMG box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0018577)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0100971
rosa_laevigata	RLG00000017032
rosa_multiflora	Rmu_co8514483.1_g000002
rosa_roxburghii	Rroxscaffold_2G00141690
rosa_rugosa	Rorug02G0094500
rosa_samantha	Rh2AG141800 Rh2BG147000 Rh2CG148300 Rh2DG147500
rosa_wichuraiana	Rw2G011130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	29
AciI	CCGC	4 cut(s)	181, 314, 368, 434
AclWI	GGATC	1 cut(s)	412
AcuI	CTGAAG	1 cut(s)	390
AfiI	CCNNNNNNNGG	1 cut(s)	230
AgsI	TTSAA	2 cut(s)	193, 303
AluBI	AGCT	9 cut(s)	149, 189, 239, 281, 299, 329, 355, 410, 446
AluI	AGCT	9 cut(s)	149, 189, 239, 281, 299, 329, 355, 410, 446
Alw21I	GWGCWC	1 cut(s)	35
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	1 cut(s)	412
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	3 cut(s)	257, 400, 484
AvaII	GGWCC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	14
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	2 cut(s)	61, 154
BmsI	GCATC	4 cut(s)	115, 121, 199, 361
BpmI	CTGGAG	2 cut(s)	171, 218
BsaI	GGTCTC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	201
Bse3DI	GCAATG	1 cut(s)	370
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	3 cut(s)	130, 376, 497
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMI	GCAATG	1 cut(s)	370
BseMII	CTCAG	2 cut(s)	39, 459
BseNI	ACTGG	1 cut(s)	201
BseRI	GAGGAG	1 cut(s)	188
BseYI	CCCAGC	1 cut(s)	55
Bsh1236I	CGCG	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmAI	GTCTC	1 cut(s)	14
Bso31I	GGTCTC	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	417
Bsp68I	TCGCGA	1 cut(s)	29
BspACI	CCGC	4 cut(s)	181, 314, 368, 434
BspCNI	CTCAG	2 cut(s)	40, 460
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	2 cut(s)	61, 154
BspPI	GGATC	1 cut(s)	412
BspTNI	GGTCTC	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	370
BsrI	ACTGG	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	1 cut(s)	417
BssT1I	CCWWGG	1 cut(s)	63
Bst4CI	ACNGT	3 cut(s)	25, 229, 264
BstC8I	GCNNGC	1 cut(s)	31
BstDEI	CTNAG	2 cut(s)	48, 468
BstF5I	GGATG	3 cut(s)	130, 376, 497
BstFNI	CGCG	1 cut(s)	29
BstKTI	GATC	1 cut(s)	420
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	1 cut(s)	417
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstUI	CGCG	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	417
BstYI	RGATCY	1 cut(s)	417
BtsCI	GGATG	3 cut(s)	130, 376, 497
BtsIMutI	CAGTG	2 cut(s)	260, 390
BtuMI	TCGCGA	1 cut(s)	29
Cac8I	GCNNGC	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	221
CseI	GACGC	1 cut(s)	131
CviAII	CATG	2 cut(s)	169, 422
DdeI	CTNAG	2 cut(s)	48, 468
DpnI	GATC	1 cut(s)	419
DpnII	GATC	1 cut(s)	417
EciI	GGCGGA	1 cut(s)	329
Eco130I	CCWWGG	1 cut(s)	63
Eco31I	GGTCTC	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	221
Eco57I	CTGAAG	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	2 cut(s)	172, 425
FaiI	YATR	6 cut(s)	170, 288, 321, 332, 342, 423
FatI	CATG	2 cut(s)	168, 421
FauI	CCCGC	1 cut(s)	427
FokI	GGATG	2 cut(s)	137, 383
GsaI	CCCAGC	1 cut(s)	59
GsuI	CTGGAG	2 cut(s)	171, 218
HgaI	GACGC	1 cut(s)	131
Hin1II	CATG	2 cut(s)	172, 425
HindIII	AAGCTT	1 cut(s)	297
HphI	GGTGA	3 cut(s)	257, 400, 484
Hpy166II	GTNNAC	1 cut(s)	465
Hpy188I	TCNGA	3 cut(s)	105, 138, 488
Hpy188III	TCNNGA	3 cut(s)	28, 206, 219
Hpy8I	GTNNAC	1 cut(s)	465
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	4 cut(s)	85, 115, 166, 304
HpyCH4III	ACNGT	3 cut(s)	25, 229, 264
HpyCH4IV	ACGT	1 cut(s)	500
HpyCH4V	TGCA	4 cut(s)	20, 212, 334, 363
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	2 cut(s)	48, 468
HpySE526I	ACGT	1 cut(s)	500
Hsp92II	CATG	2 cut(s)	172, 425
Kzo9I	GATC	1 cut(s)	417
LmnI	GCTCC	4 cut(s)	59, 139, 152, 286
LweI	GCATC	4 cut(s)	115, 121, 199, 361
MaeII	ACGT	1 cut(s)	500
MaeIII	GTNAC	2 cut(s)	258, 388
MalI	GATC	1 cut(s)	419
MboI	GATC	1 cut(s)	417
MboII	GAAGA	6 cut(s)	100, 130, 151, 157, 358, 361
MflI	RGATCY	1 cut(s)	417
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	1 cut(s)	358
MnlI	CCTC	4 cut(s)	166, 300, 463, 482
MslI	CAYNNNNRTG	2 cut(s)	167, 426
MspA1I	CMGCKG	1 cut(s)	149
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeII	GATC	1 cut(s)	417
NlaIII	CATG	2 cut(s)	172, 425
NlaIV	GGNNCC	2 cut(s)	61, 154
NmuCI	GTSAC	2 cut(s)	258, 388
NruI	TCGCGA	1 cut(s)	29
PspFI	CCCAGC	1 cut(s)	55
PspN4I	GGNNCC	2 cut(s)	61, 154
PspPI	GGNCC	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	417
PvuII	CAGCTG	1 cut(s)	149
RruI	TCGCGA	1 cut(s)	29
RseI	CAYNNNNRTG	2 cut(s)	167, 426
Sau3AI	GATC	1 cut(s)	417
Sau96I	GGNCC	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	35
SfaNI	GCATC	4 cut(s)	115, 121, 199, 361
SinI	GGWCC	1 cut(s)	221
SmiMI	CAYNNNNRTG	2 cut(s)	167, 426
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	1 cut(s)	358
SsiI	CCGC	4 cut(s)	181, 314, 368, 434
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	3 cut(s)	25, 229, 264
TaiI	ACGT	1 cut(s)	503
TaqI	TCGA	1 cut(s)	291
TaqII	GACCGA	1 cut(s)	238
TasI	AATT	1 cut(s)	358
TscAI	CASTG	2 cut(s)	267, 390
TseFI	GTSAC	2 cut(s)	258, 388
Tsp45I	GTSAC	2 cut(s)	258, 388
TspDTI	ATGAA	6 cut(s)	17, 101, 151, 157, 336, 444
TspRI	CASTG	2 cut(s)	267, 390
VpaK11BI	GGWCC	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.