Rroxscaffold_2G00152250

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0016723
Physical Location & Seq
Forward (+)
89288169 .. 89291329
3161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00152250.1

Sequence Viewer

Length: 1584 bp
ATGGAGGAACAAGATTTGCTGAATCGAAACACCGACTGCGTCCATTTCATGGCTTCTCCTCCCGCCTGCGACAAGGGACTTGAATGTGAGTTTCGACACAGCAAGATGGCGAGGCTCAACCCAAAAGAATGCTGGTATTGGTTGGCTGGGGAGTGTTTTAATCCAACTTGTGCTTTTAGGCATCCTGCATTGGAGGGGCATGAAGCAGCACCATCAGAGACCACCCCATCTTCTATTTCTGCAAACAAGAGCAACATTCCTTGTTACTTTTACTTGAATGGGATGTGCAATAAAGGTGATAGGTGCTCTTTCTTGCATGACGCTGATGGTAGTGCATCAACTGGGAAATGTTCAAACACAGCTTCTGCATGTATTGAAGCACTTCCTTCAGAAAACAAGGCATCCACAGTAAATGAAACACTATCAGCACCAACAGTTGCACACCACAACCCTTTGGAAACTGCGGCAAAGGCAACAGTTGATACAAGATTCCAGCCTAAGCAGGATCTTGATTATCGGGAACAACTACAGAAAAGTGCTTCTCCTCATGTTTCTGAATATGGGGATGAAGAGGCTGATGAAATTAGATCAAACTCCTTGCTCCTTCCAGCAGAAGGTTCTATGCATAGCAAATCTCCCTTATCCACTGATCAGAGTTCAGAGGAGGGAGCAGATGACCTTATTGTGCAAGAGGAATGGTGGGAATCCTCTCCAGGCTTTGATGTTCTTGTTGATGGTAAATCAGAGGAGGATAGCCCTGAGTACTTTCCCACACTTGACGGAGAGCACTGGGAACTAAATAAGGAGTGGCATGATTTTGACAATCCAGATGAGTATGATCCCCGGCATCCTGGTGCTGAACTTTTGTATGAAAACCAAAGTTATGACTCCTATGATTGTCTAGATACCAGGTACCTTTTTGGTAATAAGAGAAGTCTTCATGGCTATGCAGAGGATAAAATGTTGGATTCCATATTTTCCCGCAAGAGGAAGCTTATGCCGATGGAAGTGTCAGTCAATGACCAAGATGGTTTGGATCTCCGAAACCACCTGAGAAGGCGCAGAGTGATTGATGATTATCCAAGTTCTGGATTATCGAGAATGCATGAATCACTTCAGTTGATCGGTGAAAGCCAAGAATGGCCTCAAAGGCATGATACAGGTTGTCAGAGAAGATTGGTATCAGAAGTGGAAAACAGAACTTTTGAATCATGCAGGGAGAATGAATCATTTAACAATGCTGGAATTCAATGTCGTCCACATAGGCATTTACAGCATTACAGATCTCGGAAACATCAGGAAAGAAGGCTGGCTAAGCCACAGTTTCCTTCATCAGGGTTCTCAAGGAGACCTATACCAAGGGAGAAGAGATCATCTACAGGGGACTCAACTGCCTTTACAGGACCCAAGTCACTTGCTCAGATCAAAGAGGAGAAGAGGAAAGCAGAAGAAAATGGACGTGGTATTAGGAAATCAAGATGTGTGCAGAGAACTCGAGATGACTTCCAGGGCCCTAAACCTTTCACTGAAATTCTAAAAGAGAAAAGGAAGCTAGCTGACAGGAGCGGTTGTGGCCGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2 zf-CCCH_3

Protein Analysis

527

Amino Acids

60.12

Weight (kDa)

5.73

Isoelectric Point (pI)

69.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH_3 PF15663 8 - 65 9.1e-10 Zinc-finger containing family
zf_CCCH_4 PF18345 88 - 106 5.9e-06 Zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016723)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03572
malus_domestica MD00G1107100.v1.1
prunus_persica Prupe.7G239900_v2.0.a1
pyrus_communis pycom15g15750
rosa_chinensis RchiOBHm_Chr2g0089101
rosa_laevigata RLG00000015991
rosa_multiflora Rmu_sc0005510.1_g000002
rosa_roxburghii Rroxscaffold_2G00152250
rosa_rugosa Rorug01G0487400
rosa_samantha Rh2AG042900 Rh2BG041400 Rh2CG043000 Rh2DG042000
rosa_wichuraiana Rw2G003470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 912
AccB1I GGYRCC 1 cut(s) 912
AccB7I CCANNNNNTGG 2 cut(s) 49, 1088
AccBSI CCGCTC 1 cut(s) 1566
AciI CCGC 5 cut(s) 63, 464, 982, 1566, 1576
AclWI GGATC 3 cut(s) 513, 833, 1044
AcoI YGGCCR 1 cut(s) 1573
AcsI RAATTY 2 cut(s) 1245, 1530
AcuI CTGAAG 2 cut(s) 372, 1100
AfaI GTAC 2 cut(s) 764, 914
AfiI CCNNNNNNNGG 5 cut(s) 49, 614, 987, 1088, 1334
AgsI TTSAA 6 cut(s) 83, 277, 354, 377, 1208, 1250
AjiI CACGTC 1 cut(s) 1460
AjnI CCWGG 4 cut(s) 712, 850, 908, 1506
AluBI AGCT 4 cut(s) 362, 994, 1552, 1556
AluI AGCT 4 cut(s) 362, 994, 1552, 1556
Alw21I GWGCWC 2 cut(s) 308, 789
Alw26I GTCTC 2 cut(s) 212, 1342
AlwI GGATC 3 cut(s) 513, 833, 1044
AlwNI CAGNNNCTG 1 cut(s) 365
Ama87I CYCGRG 1 cut(s) 1494
AoxI GGCC 3 cut(s) 1142, 1510, 1573
ApaI GGGCCC 1 cut(s) 1514
ApeKI GCWGC 1 cut(s) 206
ApoI RAATTY 2 cut(s) 1245, 1530
Asp700I GAANNNNTTC 2 cut(s) 381, 1113
Asp718I GGTACC 1 cut(s) 912
AspLEI GCGC 1 cut(s) 1062
AspS9I GGNCC 3 cut(s) 1403, 1510, 1511
AsuC2I CCSGG 1 cut(s) 844
AsuHPI GGTGA 2 cut(s) 308, 1139
AsuNHI GCTAGC 1 cut(s) 1552
AvaI CYCGRG 1 cut(s) 1494
AvaII GGWCC 1 cut(s) 1403
BaeGI GKGCMC 1 cut(s) 1514
BanI GGYRCC 1 cut(s) 912
BanII GRGCYC 1 cut(s) 1514
BbsI GAAGAC 1 cut(s) 929
Bbv12I GWGCWC 2 cut(s) 308, 789
BbvI GCAGC 1 cut(s) 218
BccI CCATC 7 cut(s) 100, 220, 235, 320, 728, 997, 1022
BcgI CGANNNNNNTGC 2 cut(s) 1475, 1509
BciT130I CCWGG 4 cut(s) 714, 852, 910, 1508
BclI TGATCA 1 cut(s) 649
BcnI CCSGG 1 cut(s) 844
BcoDI GTCTC 2 cut(s) 212, 1342
BfaI CTAG 2 cut(s) 902, 1553
BfmI CTRYAG 2 cut(s) 527, 1377
BglI GCCNNNNNGGC 1 cut(s) 1150
BglII AGATCT 1 cut(s) 1283
BisI GCNGC 3 cut(s) 207, 465, 1576
BlpI GCTNAGC 1 cut(s) 1314
BlsI GCNGC 3 cut(s) 208, 466, 1577
BmcAI AGTACT 1 cut(s) 764
Bme1390I CCNGG 5 cut(s) 714, 844, 852, 910, 1508
Bme18I GGWCC 1 cut(s) 1403
BmeT110I CYCGRG 1 cut(s) 1494
BmgBI CACGTC 1 cut(s) 1460
BmgT120I GGNCC 3 cut(s) 1403, 1510, 1511
BmiI GGNNCC 3 cut(s) 914, 1405, 1512
BmrFI CCNGG 5 cut(s) 714, 844, 852, 910, 1508
BmrI ACTGGG 2 cut(s) 351, 799
BmsI GCATC 4 cut(s) 190, 344, 410, 856
BmtI GCTAGC 1 cut(s) 1556
BmuI ACTGGG 2 cut(s) 351, 799
BoxI GACNNNNGTC 1 cut(s) 1408
BpiI GAAGAC 1 cut(s) 929
BpmI CTGGAG 1 cut(s) 696
Bpu10I CCTNAGC 1 cut(s) 498
Bpu1102I GCTNAGC 1 cut(s) 1314
BpuEI CTTGAG 1 cut(s) 1327
BpuMI CCSGG 1 cut(s) 844
BsaBI GATNNNNATC 2 cut(s) 1077, 1180
BsaI GGTCTC 2 cut(s) 212, 1342
BsaJI CCNNGG 3 cut(s) 842, 1358, 1507
BsaXI ACNNNNNCTCC 1 cut(s) 1555
Bsc4I CCNNNNNNNGG 5 cut(s) 49, 614, 987, 1088, 1334
Bse1I ACTGG 2 cut(s) 346, 794
Bse8I GATNNNNATC 2 cut(s) 1077, 1180
BseBI CCWGG 4 cut(s) 714, 852, 910, 1508
BseDI CCNNGG 3 cut(s) 842, 1358, 1507
BseGI GGATG 5 cut(s) 181, 288, 401, 571, 847
BseJI GATNNNNATC 2 cut(s) 1077, 1180
BseLI CCNNNNNNNGG 5 cut(s) 49, 614, 987, 1088, 1334
BseMII CTCAG 3 cut(s) 750, 1043, 1433
BseNI ACTGG 2 cut(s) 346, 794
BseRI GAGGAG 5 cut(s) 48, 534, 677, 761, 1445
BseSI GKGCMC 1 cut(s) 1514
BseXI GCAGC 1 cut(s) 218
BseYI CCCAGC 1 cut(s) 146
BsgI GTGCAG 1 cut(s) 1505
BshFI GGCC 3 cut(s) 1144, 1512, 1575
BshNI GGYRCC 1 cut(s) 912
BsiHKAI GWGCWC 2 cut(s) 308, 789
BsiHKCI CYCGRG 1 cut(s) 1494
BsiSI CCGG 1 cut(s) 844
BslFI GGGAC 2 cut(s) 90, 1397
BslI CCNNNNNNNGG 5 cut(s) 49, 614, 987, 1088, 1334
BsmAI GTCTC 2 cut(s) 212, 1342
BsmFI GGGAC 2 cut(s) 90, 1397
BsmI GAATGC 2 cut(s) 134, 1107
BsnI GGCC 3 cut(s) 1144, 1512, 1575
Bso31I GGTCTC 2 cut(s) 212, 1342
BsoBI CYCGRG 1 cut(s) 1494
Bsp120I GGGCCC 1 cut(s) 1510
Bsp1286I GDGCHC 3 cut(s) 308, 789, 1514
Bsp143I GATC 9 cut(s) 505, 587, 649, 838, 1036, 1122, 1283, 1370, 1422
Bsp1720I GCTNAGC 1 cut(s) 1314
BspACI CCGC 5 cut(s) 63, 464, 982, 1566, 1576
BspANI GGCC 3 cut(s) 1144, 1512, 1575
BspCNI CTCAG 3 cut(s) 751, 1044, 1432
BspLI GGNNCC 3 cut(s) 914, 1405, 1512
BspOI GCTAGC 1 cut(s) 1556
BspPI GGATC 3 cut(s) 513, 833, 1044
BspT107I GGYRCC 1 cut(s) 912
BspTNI GGTCTC 2 cut(s) 212, 1342
BsrBI CCGCTC 1 cut(s) 1566
BsrI ACTGG 2 cut(s) 346, 794
BssECI CCNNGG 3 cut(s) 842, 1358, 1507
BssMI GATC 9 cut(s) 505, 587, 649, 838, 1036, 1122, 1283, 1370, 1422
BssT1I CCWWGG 1 cut(s) 1358
Bst2UI CCWGG 4 cut(s) 714, 852, 910, 1508
Bst4CI ACNGT 4 cut(s) 409, 436, 478, 1323
Bst6I CTCTTC 3 cut(s) 564, 1361, 1430
BstC8I GCNNGC 3 cut(s) 67, 1311, 1554
BstDEI CTNAG 5 cut(s) 498, 759, 1052, 1314, 1419
BstENI CCTNNNNNAGG 1 cut(s) 1332
BstF5I GGATG 5 cut(s) 181, 288, 401, 571, 847
BstHHI GCGC 1 cut(s) 1062
BstKTI GATC 9 cut(s) 508, 590, 652, 841, 1039, 1125, 1286, 1373, 1425
BstMAI GTCTC 2 cut(s) 212, 1342
BstMBI GATC 9 cut(s) 505, 587, 649, 838, 1036, 1122, 1283, 1370, 1422
BstMWI GCNNNNNNNGC 5 cut(s) 470, 1150, 1273, 1315, 1572
BstNI CCWGG 4 cut(s) 714, 852, 910, 1508
BstNSI RCATGY 1 cut(s) 372
BstPAI GACNNNNGTC 1 cut(s) 1408
BstSCI CCNGG 5 cut(s) 712, 842, 850, 908, 1506
BstSFI CTRYAG 2 cut(s) 527, 1377
BstSLI GKGCMC 1 cut(s) 1514
BstV1I GCAGC 1 cut(s) 218
BstV2I GAAGAC 1 cut(s) 929
BstX2I RGATCY 3 cut(s) 505, 1036, 1283
BstYI RGATCY 3 cut(s) 505, 1036, 1283
BsuRI GGCC 3 cut(s) 1144, 1512, 1575
BtrI CACGTC 1 cut(s) 1460
BtsCI GGATG 5 cut(s) 181, 288, 401, 571, 847
BtsIMutI CAGTG 3 cut(s) 645, 787, 1524
Cac8I GCNNGC 3 cut(s) 67, 1311, 1554
CaiI CAGNNNCTG 1 cut(s) 365
CfoI GCGC 1 cut(s) 1062
Cfr13I GGNCC 3 cut(s) 1403, 1510, 1511
CseI GACGC 2 cut(s) 28, 329
CsiI ACCWGGT 1 cut(s) 908
Csp6I GTAC 2 cut(s) 763, 913
CviQI GTAC 2 cut(s) 763, 913
DdeI CTNAG 5 cut(s) 498, 759, 1052, 1314, 1419
DpnI GATC 9 cut(s) 507, 589, 651, 840, 1038, 1124, 1285, 1372, 1424
DpnII GATC 9 cut(s) 505, 587, 649, 838, 1036, 1122, 1283, 1370, 1422
EaeI YGGCCR 1 cut(s) 1573
Eam1104I CTCTTC 3 cut(s) 564, 1361, 1430
EarI CTCTTC 3 cut(s) 564, 1361, 1430
Eco130I CCWWGG 1 cut(s) 1358
Eco24I GRGCYC 1 cut(s) 1514
Eco31I GGTCTC 2 cut(s) 212, 1342
Eco47I GGWCC 1 cut(s) 1403
Eco57I CTGAAG 2 cut(s) 372, 1100
Eco88I CYCGRG 1 cut(s) 1494
EcoNI CCTNNNNNAGG 1 cut(s) 1332
EcoO109I RGGNCCY 3 cut(s) 1403, 1510, 1511
EcoRI GAATTC 1 cut(s) 1245
EcoRII CCWGG 4 cut(s) 712, 850, 908, 1506
EcoT14I CCWWGG 1 cut(s) 1358
EcoT22I ATGCAT 2 cut(s) 627, 1107
EcoT38I GRGCYC 1 cut(s) 1514
ErhI CCWWGG 1 cut(s) 1358
FaqI GGGAC 2 cut(s) 90, 1397
FauI CCCGC 2 cut(s) 70, 989
FbaI TGATCA 1 cut(s) 649
Fnu4HI GCNGC 3 cut(s) 207, 465, 1576
FokI GGATG 5 cut(s) 168, 295, 388, 578, 834
FriOI GRGCYC 1 cut(s) 1514
Fsp4HI GCNGC 3 cut(s) 207, 465, 1576
FspBI CTAG 2 cut(s) 902, 1553
GlaI GCGC 1 cut(s) 1061
GluI GCNGC 3 cut(s) 207, 465, 1576
GsaI CCCAGC 1 cut(s) 150
GsuI CTGGAG 1 cut(s) 696
HaeIII GGCC 3 cut(s) 1144, 1512, 1575
HapII CCGG 1 cut(s) 844
HgaI GACGC 2 cut(s) 28, 329
HhaI GCGC 1 cut(s) 1062
Hin6I GCGC 1 cut(s) 1060
HinP1I GCGC 1 cut(s) 1060
HindIII AAGCTT 1 cut(s) 992
HinfI GANTC 9 cut(s) 22, 489, 704, 887, 968, 1109, 1208, 1226, 1385
HpaII CCGG 1 cut(s) 844
HphI GGTGA 2 cut(s) 308, 1139
Hpy166II GTNNAC 1 cut(s) 1259
Hpy188III TCNNGA 9 cut(s) 509, 518, 827, 902, 1089, 1098, 1298, 1476, 1496
Hpy8I GTNNAC 1 cut(s) 1259
HpyAV CCTTC 6 cut(s) 396, 608, 614, 1050, 1299, 1338
HpyCH4III ACNGT 4 cut(s) 409, 436, 478, 1323
HpyCH4IV ACGT 1 cut(s) 1459
HpyF10VI GCNNNNNNNGC 5 cut(s) 470, 1150, 1273, 1315, 1572
HpyF3I CTNAG 5 cut(s) 498, 759, 1052, 1314, 1419
HpySE526I ACGT 1 cut(s) 1459
HspAI GCGC 1 cut(s) 1060
KpnI GGTACC 1 cut(s) 916
Ksp22I TGATCA 1 cut(s) 649
Kzo9I GATC 9 cut(s) 505, 587, 649, 838, 1036, 1122, 1283, 1370, 1422
LmnI GCTCC 3 cut(s) 606, 668, 1563
Lsp1109I GCAGC 1 cut(s) 218
LweI GCATC 4 cut(s) 190, 344, 410, 856
MabI ACCWGGT 1 cut(s) 908
MaeI CTAG 2 cut(s) 902, 1553
MaeII ACGT 1 cut(s) 1459
MaeIII GTNAC 2 cut(s) 263, 1410
MalI GATC 9 cut(s) 507, 589, 651, 840, 1038, 1124, 1285, 1372, 1424
MbiI CCGCTC 1 cut(s) 1566
MboI GATC 9 cut(s) 505, 587, 649, 838, 1036, 1122, 1283, 1370, 1422
MboII GAAGA 7 cut(s) 222, 581, 929, 1185, 1378, 1447, 1460
MflI RGATCY 3 cut(s) 505, 1036, 1283
MhlI GDGCHC 3 cut(s) 308, 789, 1514
MluCI AATT 3 cut(s) 582, 1245, 1530
MlyI GAGTC 2 cut(s) 881, 1379
MmeI TCCRAC 2 cut(s) 188, 945
Mph1103I ATGCAT 2 cut(s) 627, 1107
MroXI GAANNNNTTC 2 cut(s) 381, 1113
MseI TTAA 2 cut(s) 159, 1233
MslI CAYNNNNRTG 2 cut(s) 852, 945
MspI CCGG 1 cut(s) 844
MspR9I CCNGG 5 cut(s) 714, 844, 852, 910, 1508
Mva1269I GAATGC 2 cut(s) 134, 1107
MvaI CCWGG 4 cut(s) 714, 852, 910, 1508
MwoI GCNNNNNNNGC 5 cut(s) 470, 1150, 1273, 1315, 1572
NciI CCSGG 1 cut(s) 844
NdeII GATC 9 cut(s) 505, 587, 649, 838, 1036, 1122, 1283, 1370, 1422
NheI GCTAGC 1 cut(s) 1552
NlaIV GGNNCC 3 cut(s) 914, 1405, 1512
NmuCI GTSAC 1 cut(s) 1410
NsiI ATGCAT 2 cut(s) 627, 1107
NspI RCATGY 1 cut(s) 372
PaeR7I CTCGAG 1 cut(s) 1494
PctI GAATGC 2 cut(s) 134, 1107
PdmI GAANNNNTTC 2 cut(s) 381, 1113
PfeI GAWTC 7 cut(s) 22, 489, 704, 968, 1109, 1208, 1226
PflFI GACNNNGTC 1 cut(s) 38
PflMI CCANNNNNTGG 2 cut(s) 49, 1088
PkrI GCNGC 3 cut(s) 208, 466, 1577
PleI GAGTC 2 cut(s) 881, 1379
PpsI GAGTC 2 cut(s) 881, 1379
PpuMI RGGWCCY 1 cut(s) 1403
PshAI GACNNNNGTC 1 cut(s) 1408
Psp5II RGGWCCY 1 cut(s) 1403
Psp6I CCWGG 4 cut(s) 712, 850, 908, 1506
PspFI CCCAGC 1 cut(s) 146
PspGI CCWGG 4 cut(s) 712, 850, 908, 1506
PspN4I GGNNCC 3 cut(s) 914, 1405, 1512
PspOMI GGGCCC 1 cut(s) 1510
PspPI GGNCC 3 cut(s) 1403, 1510, 1511
PspPPI RGGWCCY 1 cut(s) 1403
PstNI CAGNNNCTG 1 cut(s) 365
PsuI RGATCY 3 cut(s) 505, 1036, 1283
PsyI GACNNNGTC 1 cut(s) 38
RsaI GTAC 2 cut(s) 764, 914
RsaNI GTAC 2 cut(s) 763, 913
RseI CAYNNNNRTG 2 cut(s) 852, 945
SaqAI TTAA 2 cut(s) 159, 1233
SatI GCNGC 3 cut(s) 207, 465, 1576
Sau3AI GATC 9 cut(s) 505, 587, 649, 838, 1036, 1122, 1283, 1370, 1422
Sau96I GGNCC 3 cut(s) 1403, 1510, 1511
ScaI AGTACT 1 cut(s) 764
SchI GAGTC 2 cut(s) 881, 1379
ScrFI CCNGG 5 cut(s) 714, 844, 852, 910, 1508
SduI GDGCHC 3 cut(s) 308, 789, 1514
SexAI ACCWGGT 1 cut(s) 908
SfaNI GCATC 4 cut(s) 190, 344, 410, 856
SfcI CTRYAG 2 cut(s) 527, 1377
Sfr274I CTCGAG 1 cut(s) 1494
SinI GGWCC 1 cut(s) 1403
SlaI CTCGAG 1 cut(s) 1494
SmiMI CAYNNNNRTG 2 cut(s) 852, 945
SmlI CTYRAG 2 cut(s) 1342, 1494
SmoI CTYRAG 2 cut(s) 1342, 1494
Sse9I AATT 3 cut(s) 582, 1245, 1530
SsiI CCGC 5 cut(s) 63, 464, 982, 1566, 1576
SspMI CTAG 2 cut(s) 902, 1553
StyD4I CCNGG 5 cut(s) 712, 842, 850, 908, 1506
StyI CCWWGG 1 cut(s) 1358
TaaI ACNGT 4 cut(s) 409, 436, 478, 1323
TaiI ACGT 1 cut(s) 1462
TaqI TCGA 4 cut(s) 25, 94, 1097, 1495
TasI AATT 3 cut(s) 582, 1245, 1530
TatI WGTACW 1 cut(s) 762
TauI GCSGC 2 cut(s) 467, 1578
TfiI GAWTC 7 cut(s) 22, 489, 704, 968, 1109, 1208, 1226
Tru1I TTAA 2 cut(s) 159, 1233
Tru9I TTAA 2 cut(s) 159, 1233
TscAI CASTG 3 cut(s) 652, 794, 1531
TseFI GTSAC 1 cut(s) 1410
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 1410
TspGWI ACGGA 1 cut(s) 795
TspRI CASTG 3 cut(s) 652, 794, 1531
Tth111I GACNNNGTC 1 cut(s) 38
Van91I CCANNNNNTGG 2 cut(s) 49, 1088
VpaK11BI GGWCC 1 cut(s) 1403
XagI CCTNNNNNAGG 1 cut(s) 1332
XapI RAATTY 2 cut(s) 1245, 1530
XbaI TCTAGA 1 cut(s) 901
XceI RCATGY 1 cut(s) 372
XcmI CCANNNNNNNNNTGG 1 cut(s) 129
XhoI CTCGAG 1 cut(s) 1494
XmnI GAANNNNTTC 2 cut(s) 381, 1113
XspI CTAG 2 cut(s) 902, 1553
ZrmI AGTACT 1 cut(s) 764
Zsp2I ATGCAT 2 cut(s) 627, 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.