Rorug01G0487400

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0007633
Physical Location & Seq
Reverse (-)
57309395 .. 57312788
3394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0487400.1

Sequence Viewer

Length: 2367 bp
ATGGGACATATGAAAACCTTTAGACCCATTACCAGCAGTTTTGAAGTTGGTGAGGTGGATGGTAAGTGCAGAGTGGATTTGAATTTTCCCACACCAACACCAACAACAACAGTGATGGAGGCCATTTCAATTGTAGAGGAGCCTCATGATGCCATGGAGTTTGAATCTCATGAAGCTGCATATGATTACTACAAAGCATATGCCAAGTCTGTGGGTTTCGGCACTGCTAAATTGAGCAGTCGTCGATCTAGGGCGTCCAAAGAATTCATTGATGCCAAATTTTCATGCATAAGATATGGAAACAAGCAGCAGTCCGATGATGCCATCAATCCCCGGCCTTCCCCCAAAATTGGTTGCAAGGCAAGCATGCATGTGAAGCGCAGGCCAAATGGTAATTGGTATGTCTATAGTTTCGTAAAGGAGCACAACCATGAGCTTTTACCGGCTCAAGCACATTTCTTTCGCAGCCACAGAAATGCAGACCCGCTTAAGAATAACAACGATGTTAGGATGCGAAGACGGAAGAATGTGAATTCAGTGTCCAGCTTATTCAGTGCATATCAGAATGTTGATTGTTTAGAGAGTTATTTGAGAAATCAGCATGATAAGGGACGGTCCTTGTCTCTAGAGTCAGGGGATGCTCAAGTGCTACTGGAATGCTTTATGCGCATGCAGGAAGAAAATCCAAAATTCTACTATGCAGTTGATCTAAATGAAGAGCACCGGTTGAGAAATGTGTTCTGGGTAGACTCCAAAGGAATGGAAGACTACACCAACTTCAGTGATGTTGTTTTCTTTGACACCACATACTTCACAAACAAGTATAAAATGCCCTTGGTTCTTTTTATAGGAGTGAACCATCATATTCAACCCACGTTAATGGGTTGTGCATTGATTGCGGATGAGACGGTTTATACTTTTGTGTGGTTAATGCAGACATGGTTAATAGCAATGGGGGAACAAGCTCCACGAGTGATACTCTCTGACCAGAATGACGCCATCAAAGCGGCTATTGCAGCAGTATTTCCAGGCACACGCCATTGCTTTTCTTTGTGGCATATAATGGAGAAAATACACGGGCAGCTCGAGTTTTGGAGCATGTGGAATGATACTTTTATGGCTGAGTTTAATGAGTGTGTTTTTAAGTCCTGGTCAGAAGAACAATTTGACAAGAGATGGTGCAAACTGCTTGATAAGTTTAATCTGAGAGAAGTTGAATGGATTCAGTCCTTGTATGAAGATCGTACTCATTGGGTGCCCACTTTCATGAGAGATATATCCTTTGCTGGATTGTCTCCAACTTCACGGTCGTCAAGTTTGAATTCATCATTTGACAAATATTTCCAAGCGGAAACTTCAGTACCAGAGTTTATGGAAAGTTACAGGGTAATTCTTGAAGATAGGTATGAAGAGGAAGCAAAAGCAAATTTTGATGCTTGGCATGAAACACCCGAGTTGAAGTCTCCATCACCTTTTGAGAAGCAACTGGCACTGGTGTACACACGGGAAGTTTTTAAAAACTTCCAAGTGGAGGTTTTGGGAGCAGCTGCTTGTCATCTTAAGAAAGAAAGTGAAGACATGACAACCACAACGTACAGTGTAAAAGACATTGAAGATGAACAGAATTATATAGTGGAGTGGAACGAATCGAAGTCGGATATATGTTGTTCGTGCCATTCATTTGAGTATAAAGGTTATCTCTGCAGACATGCTATTGTTGTTCTCCAAATGTCTGGTGTTTTCACCATACCTGCCAAATATGTATTGCAGCGGTGGACAAATACTGCTATGAGCAGGCATGCCATTGGCGAAAAATTGGATGAGGTACAATCTAAGGTCCGTCGTTACAATGATTTATGTCGACGAGCCATAATATTGGGTGAAGAAGGGTCACTTTCTCAGGAGAGTTATGATCTAGCATTATGTGCCATAAAAGAAGCTTTAAAGCAATGCACGAGTTTGAACACCTCTGTTGAAAGCAATGCAAAACCTAATGACTTGGCAATAGATGGTATTTGTGGTATTGAAGAGAGTCAATGTGGTATGACATCTGATGACAAGATTTTTGGTCCGAAAGTGAGTACTGCTAGCAAGACTCCTAGGAGAGTTGGGACTGGGAAAGTGGTGGCAAGGCATGGGAAAGGAAAGGTACCTCAGCCGGAAGATATGAGAGTTGGAACACAAGACCAGTTTCCCCAAATGCAAGTTTGTTCTGAGACAAGGCCGCCTATGCTGATGCAGCTACATAATGTGGTGCCTCCGCAGTTGCATAATATGGTGCCATCAATGTTTCAAAATGTCGCACCGGCACAGTTCCATAACGTGGCTTGTTCGACACCTGTGCAGGAGAATCGTCTCCCTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2 zf-CCCH_3

Protein Analysis

788

Amino Acids

90.59

Weight (kDa)

6.12

Isoelectric Point (pI)

50.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 62 - 148 2.4e-28 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 232 - 346 1e-05 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 263 - 357 1.6e-28 MULE transposase domain
SWIM PF04434 548 - 577 1.3e-08 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 668
Acc36I ACCTGC 1 cut(s) 1759
Acc65I GGTACC 1 cut(s) 2149
AccB1I GGYRCC 4 cut(s) 1255, 2149, 2254, 2278
AccB7I CCANNNNNTGG 1 cut(s) 2323
AccI GTMKAC 2 cut(s) 747, 1861
AciI CCGC 7 cut(s) 485, 899, 1007, 1349, 1771, 2225, 2261
AcsI RAATTY 7 cut(s) 82, 263, 278, 532, 689, 1321, 1426
AcuI CTGAAG 2 cut(s) 763, 1341
AcyI GRCGYC 2 cut(s) 254, 996
AfaI GTAC 7 cut(s) 1246, 1362, 1499, 1595, 1827, 2083, 2151
AfiI CCNNNNNNNGG 3 cut(s) 350, 1531, 2323
AflII CTTAAG 2 cut(s) 488, 1559
AgeI ACCGGT 1 cut(s) 723
AjnI CCWGG 2 cut(s) 1027, 1148
AluBI AGCT 8 cut(s) 176, 436, 546, 965, 1084, 1547, 1940, 2242
AluI AGCT 8 cut(s) 176, 436, 546, 965, 1084, 1547, 1940, 2242
Alw21I GWGCWC 2 cut(s) 426, 723
Alw26I GTCTC 6 cut(s) 627, 899, 1299, 1467, 2210, 2360
Ama87I CYCGRG 2 cut(s) 1085, 1451
AoxI GGCC 4 cut(s) 120, 335, 383, 2222
ApeKI GCWGC 9 cut(s) 176, 307, 465, 1016, 1081, 1544, 1547, 1768, 2239
ApoI RAATTY 7 cut(s) 82, 263, 278, 532, 689, 1321, 1426
ArsI GACNNNNNNTTYG 2 cut(s) 2048, 2080
AsiGI ACCGGT 1 cut(s) 723
Asp700I GAANNNNTTC 1 cut(s) 1221
Asp718I GGTACC 1 cut(s) 2149
AspA2I CCTAGG 1 cut(s) 2099
AspLEI GCGC 2 cut(s) 381, 669
AspS9I GGNCC 3 cut(s) 615, 1837, 2069
AsuC2I CCSGG 1 cut(s) 334
AsuHPI GGTGA 4 cut(s) 62, 1461, 1735, 1892
AsuNHI GCTAGC 1 cut(s) 2087
AvaI CYCGRG 2 cut(s) 1085, 1451
AvaII GGWCC 3 cut(s) 615, 1837, 2069
AvrII CCTAGG 1 cut(s) 2099
BaeGI GKGCMC 1 cut(s) 1260
BaeI ACNNNNGTAYC 2 cut(s) 1344, 1377
BanI GGYRCC 4 cut(s) 1255, 2149, 2254, 2278
BauI CACGAG 2 cut(s) 969, 1954
BbsI GAAGAC 3 cut(s) 523, 771, 1581
Bbv12I GWGCWC 2 cut(s) 426, 723
BbvCI CCTCAGC 1 cut(s) 2154
BbvI GCAGC 9 cut(s) 163, 319, 477, 1028, 1093, 1534, 1556, 1780, 2251
BccI CCATC 9 cut(s) 53, 109, 332, 867, 1007, 1170, 1474, 2003, 2290
BcgI CGANNNNNNTGC 4 cut(s) 2323, 2333, 2357, 2367
BciT130I CCWGG 2 cut(s) 1029, 1150
BcnI CCSGG 1 cut(s) 334
BcoDI GTCTC 6 cut(s) 627, 899, 1299, 1467, 2210, 2360
BfaI CTAG 5 cut(s) 249, 626, 1916, 2088, 2100
BfmI CTRYAG 2 cut(s) 406, 1702
BfrI CTTAAG 2 cut(s) 488, 1559
BfuAI ACCTGC 1 cut(s) 1759
BlnI CCTAGG 1 cut(s) 2099
BmcAI AGTACT 1 cut(s) 2083
Bme1390I CCNGG 3 cut(s) 334, 1029, 1150
Bme18I GGWCC 3 cut(s) 615, 1837, 2069
BmeT110I CYCGRG 2 cut(s) 1085, 1451
BmgT120I GGNCC 3 cut(s) 615, 1837, 2069
BmiI GGNNCC 5 cut(s) 141, 1257, 2151, 2256, 2280
BmrFI CCNGG 3 cut(s) 334, 1029, 1150
BmrI ACTGGG 1 cut(s) 2124
BmsI GCATC 7 cut(s) 139, 262, 310, 501, 628, 1423, 2226
BmtI GCTAGC 1 cut(s) 2091
BmuI ACTGGG 1 cut(s) 2124
BpiI GAAGAC 3 cut(s) 523, 771, 1581
BplI GAGNNNNNCTC 2 cut(s) 963, 995
Bpu10I CCTNAGC 1 cut(s) 2154
BpuEI CTTGAG 2 cut(s) 432, 627
BpuMI CCSGG 1 cut(s) 334
BsaHI GRCGYC 2 cut(s) 254, 996
BsaJI CCNNGG 4 cut(s) 153, 332, 834, 2099
BsaWI WCCGGW 1 cut(s) 723
Bsc4I CCNNNNNNNGG 3 cut(s) 350, 1531, 2323
Bse118I RCCGGY 3 cut(s) 442, 723, 2305
Bse1I ACTGG 5 cut(s) 657, 1491, 1497, 2119, 2188
Bse3DI GCAATG 4 cut(s) 957, 1039, 1955, 1987
BseBI CCWGG 2 cut(s) 1029, 1150
BseDI CCNNGG 4 cut(s) 153, 332, 834, 2099
BseGI GGATG 5 cut(s) 64, 516, 643, 907, 1825
BseLI CCNNNNNNNGG 3 cut(s) 350, 1531, 2323
BseMI GCAATG 4 cut(s) 957, 1039, 1955, 1987
BseMII CTCAG 5 cut(s) 1113, 1196, 1913, 2168, 2205
BseNI ACTGG 5 cut(s) 657, 1491, 1497, 2119, 2188
BseRI GAGGAG 1 cut(s) 152
BseSI GKGCMC 1 cut(s) 1260
BseXI GCAGC 9 cut(s) 163, 319, 477, 1028, 1093, 1534, 1556, 1780, 2251
BsgI GTGCAG 2 cut(s) 88, 2363
Bsh1285I CGRYCG 1 cut(s) 1310
BshFI GGCC 4 cut(s) 122, 337, 385, 2224
BshNI GGYRCC 4 cut(s) 1255, 2149, 2254, 2278
BshTI ACCGGT 1 cut(s) 723
BsiEI CGRYCG 1 cut(s) 1310
BsiHKAI GWGCWC 2 cut(s) 426, 723
BsiHKCI CYCGRG 2 cut(s) 1085, 1451
BsiSI CCGG 5 cut(s) 334, 443, 724, 2159, 2306
BslFI GGGAC 3 cut(s) 18, 624, 2125
BslI CCNNNNNNNGG 3 cut(s) 350, 1531, 2323
BsmAI GTCTC 6 cut(s) 627, 899, 1299, 1467, 2210, 2360
BsmBI CGTCTC 2 cut(s) 899, 2360
BsmFI GGGAC 3 cut(s) 18, 624, 2125
BsmI GAATGC 1 cut(s) 662
BsnI GGCC 4 cut(s) 122, 337, 385, 2224
BsoBI CYCGRG 2 cut(s) 1085, 1451
Bsp1286I GDGCHC 3 cut(s) 426, 723, 1260
Bsp1407I TGTACA 1 cut(s) 1497
Bsp143I GATC 4 cut(s) 245, 706, 1240, 1912
Bsp19I CCATGG 1 cut(s) 153
BspACI CCGC 7 cut(s) 485, 899, 1007, 1349, 1771, 2225, 2261
BspANI GGCC 4 cut(s) 122, 337, 385, 2224
BspCNI CTCAG 5 cut(s) 1114, 1197, 1912, 2167, 2206
BspHI TCATGA 3 cut(s) 145, 169, 1266
BspLI GGNNCC 5 cut(s) 141, 1257, 2151, 2256, 2280
BspMAI CTGCAG 1 cut(s) 1706
BspMI ACCTGC 1 cut(s) 1759
BspOI GCTAGC 1 cut(s) 2091
BspQI GCTCTTC 1 cut(s) 711
BspT107I GGYRCC 4 cut(s) 1255, 2149, 2254, 2278
BspTI CTTAAG 2 cut(s) 488, 1559
BsrDI GCAATG 4 cut(s) 957, 1039, 1955, 1987
BsrFI RCCGGY 3 cut(s) 442, 723, 2305
BsrGI TGTACA 1 cut(s) 1497
BsrI ACTGG 5 cut(s) 657, 1491, 1497, 2119, 2188
BssAI RCCGGY 3 cut(s) 442, 723, 2305
BssECI CCNNGG 4 cut(s) 153, 332, 834, 2099
BssMI GATC 4 cut(s) 245, 706, 1240, 1912
BssNI GRCGYC 2 cut(s) 254, 996
BssSI CACGAG 2 cut(s) 969, 1954
BssT1I CCWWGG 3 cut(s) 153, 834, 2099
Bst2BI CACGAG 2 cut(s) 969, 1954
Bst2UI CCWGG 2 cut(s) 1029, 1150
Bst4CI ACNGT 6 cut(s) 112, 615, 910, 1308, 1598, 2313
Bst6I CTCTTC 3 cut(s) 711, 1404, 2022
BstACI GRCGYC 2 cut(s) 254, 996
BstAFI CTTAAG 2 cut(s) 488, 1559
BstAPI GCANNNNNTGC 2 cut(s) 896, 1925
BstAUI TGTACA 1 cut(s) 1497
BstC8I GCNNGC 7 cut(s) 364, 368, 383, 671, 1796, 1800, 2089
BstDEI CTNAG 6 cut(s) 1122, 1205, 1833, 1899, 2154, 2214
BstDSI CCRYGG 1 cut(s) 153
BstF5I GGATG 5 cut(s) 64, 516, 643, 907, 1825
BstHHI GCGC 2 cut(s) 381, 669
BstKTI GATC 4 cut(s) 248, 709, 1243, 1915
BstMAI GTCTC 6 cut(s) 627, 899, 1299, 1467, 2210, 2360
BstMBI GATC 4 cut(s) 245, 706, 1240, 1912
BstMCI CGRYCG 1 cut(s) 1310
BstNI CCWGG 2 cut(s) 1029, 1150
BstNSI RCATGY 6 cut(s) 370, 374, 673, 1102, 1712, 1802
BstSCI CCNGG 3 cut(s) 332, 1027, 1148
BstSFI CTRYAG 2 cut(s) 406, 1702
BstSLI GKGCMC 1 cut(s) 1260
BstV1I GCAGC 9 cut(s) 163, 319, 477, 1028, 1093, 1534, 1556, 1780, 2251
BstV2I GAAGAC 3 cut(s) 523, 771, 1581
BstXI CCANNNNNNTGG 5 cut(s) 211, 760, 880, 1733, 1876
BsuRI GGCC 4 cut(s) 122, 337, 385, 2224
BtgI CCRYGG 1 cut(s) 153
BtsCI GGATG 5 cut(s) 64, 516, 643, 907, 1825
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 7 cut(s) 117, 222, 543, 559, 787, 1490, 1603
BveI ACCTGC 1 cut(s) 1759
Cac8I GCNNGC 7 cut(s) 364, 368, 383, 671, 1796, 1800, 2089
CciI TCATGA 3 cut(s) 145, 169, 1266
CfoI GCGC 2 cut(s) 381, 669
Cfr10I RCCGGY 3 cut(s) 442, 723, 2305
Cfr13I GGNCC 3 cut(s) 615, 1837, 2069
CseI GACGC 2 cut(s) 243, 1004
Csp6I GTAC 7 cut(s) 1245, 1361, 1498, 1594, 1826, 2082, 2150
CspAI ACCGGT 1 cut(s) 723
CviQI GTAC 7 cut(s) 1245, 1361, 1498, 1594, 1826, 2082, 2150
DdeI CTNAG 6 cut(s) 1122, 1205, 1833, 1899, 2154, 2214
DpnI GATC 4 cut(s) 247, 708, 1242, 1914
DpnII GATC 4 cut(s) 245, 706, 1240, 1912
DraI TTTAAA 2 cut(s) 1516, 1944
Eam1104I CTCTTC 3 cut(s) 711, 1404, 2022
EarI CTCTTC 3 cut(s) 711, 1404, 2022
Eco130I CCWWGG 3 cut(s) 153, 834, 2099
Eco47I GGWCC 3 cut(s) 615, 1837, 2069
Eco57I CTGAAG 2 cut(s) 763, 1341
Eco88I CYCGRG 2 cut(s) 1085, 1451
EcoRI GAATTC 3 cut(s) 263, 532, 1321
EcoRII CCWGG 2 cut(s) 1027, 1148
EcoT14I CCWWGG 3 cut(s) 153, 834, 2099
EcoT22I ATGCAT 2 cut(s) 290, 372
ErhI CCWWGG 3 cut(s) 153, 834, 2099
Esp3I CGTCTC 2 cut(s) 899, 2360
FalI AAGNNNNNCTT 2 cut(s) 1878, 1910
FaqI GGGAC 3 cut(s) 18, 624, 2125
FauI CCCGC 1 cut(s) 492
FauNDI CATATG 3 cut(s) 9, 181, 199
FblI GTMKAC 2 cut(s) 747, 1861
FokI GGATG 5 cut(s) 71, 523, 650, 914, 1832
FspAI RTGCGCAY 1 cut(s) 668
FspBI CTAG 5 cut(s) 249, 626, 1916, 2088, 2100
FspI TGCGCA 1 cut(s) 668
GlaI GCGC 2 cut(s) 380, 668
HaeIII GGCC 4 cut(s) 122, 337, 385, 2224
HapII CCGG 5 cut(s) 334, 443, 724, 2159, 2306
HgaI GACGC 2 cut(s) 243, 1004
HhaI GCGC 2 cut(s) 381, 669
Hin1I GRCGYC 2 cut(s) 254, 996
Hin6I GCGC 2 cut(s) 379, 667
HinP1I GCGC 2 cut(s) 379, 667
HincII GTYRAC 1 cut(s) 1862
HindII GTYRAC 1 cut(s) 1862
HindIII AAGCTT 1 cut(s) 1938
HinfI GANTC 8 cut(s) 164, 629, 749, 1222, 1646, 2032, 2095, 2350
HpaII CCGG 5 cut(s) 334, 443, 724, 2159, 2306
HphI GGTGA 4 cut(s) 62, 1461, 1735, 1892
Hpy166II GTNNAC 6 cut(s) 748, 856, 1498, 1500, 1776, 1862
Hpy188I TCNGA 9 cut(s) 316, 564, 985, 1156, 1206, 1657, 2053, 2073, 2215
Hpy188III TCNNGA 6 cut(s) 146, 170, 626, 1267, 1394, 1901
Hpy8I GTNNAC 6 cut(s) 748, 856, 1498, 1500, 1776, 1862
Hpy99I CGWCG 3 cut(s) 246, 1845, 1866
HpyAV CCTTC 2 cut(s) 348, 1880
HpyCH4III ACNGT 6 cut(s) 112, 615, 910, 1308, 1598, 2313
HpyCH4IV ACGT 3 cut(s) 875, 1592, 2322
HpyF3I CTNAG 6 cut(s) 1122, 1205, 1833, 1899, 2154, 2214
HpySE526I ACGT 3 cut(s) 875, 1592, 2322
Hsp92I GRCGYC 2 cut(s) 254, 996
HspAI GCGC 2 cut(s) 379, 667
KpnI GGTACC 1 cut(s) 2153
Kzo9I GATC 4 cut(s) 245, 706, 1240, 1912
LguI GCTCTTC 1 cut(s) 711
LmnI GCTCC 5 cut(s) 139, 421, 970, 1095, 1541
Lsp1109I GCAGC 9 cut(s) 163, 319, 477, 1028, 1093, 1534, 1556, 1780, 2251
LweI GCATC 7 cut(s) 139, 262, 310, 501, 628, 1423, 2226
MaeI CTAG 5 cut(s) 249, 626, 1916, 2088, 2100
MaeII ACGT 3 cut(s) 875, 1592, 2322
MaeIII GTNAC 3 cut(s) 1379, 1844, 1890
MalI GATC 4 cut(s) 247, 708, 1242, 1914
MboI GATC 4 cut(s) 245, 706, 1240, 1912
MfeI CAATTG 1 cut(s) 129
MhlI GDGCHC 3 cut(s) 426, 723, 1260
MlyI GAGTC 4 cut(s) 638, 743, 2041, 2089
MmeI TCCRAC 3 cut(s) 1322, 1635, 2155
Mph1103I ATGCAT 2 cut(s) 290, 372
MroXI GAANNNNTTC 1 cut(s) 1221
MslI CAYNNNNRTG 5 cut(s) 371, 429, 474, 878, 1265
MspA1I CMGCKG 2 cut(s) 1547, 1771
MspCI CTTAAG 2 cut(s) 488, 1559
MspI CCGG 5 cut(s) 334, 443, 724, 2159, 2306
MspR9I CCNGG 3 cut(s) 334, 1029, 1150
MunI CAATTG 1 cut(s) 129
Mva1269I GAATGC 1 cut(s) 662
MvaI CCWGG 2 cut(s) 1029, 1150
NciI CCSGG 1 cut(s) 334
NcoI CCATGG 1 cut(s) 153
NdeI CATATG 3 cut(s) 9, 181, 199
NdeII GATC 4 cut(s) 245, 706, 1240, 1912
NheI GCTAGC 1 cut(s) 2087
NlaIV GGNNCC 5 cut(s) 141, 1257, 2151, 2256, 2280
NmuCI GTSAC 1 cut(s) 1890
NsbI TGCGCA 1 cut(s) 668
NsiI ATGCAT 2 cut(s) 290, 372
NspI RCATGY 6 cut(s) 370, 374, 673, 1102, 1712, 1802
PaeI GCATGC 3 cut(s) 370, 673, 1802
PaeR7I CTCGAG 1 cut(s) 1085
PagI TCATGA 3 cut(s) 145, 169, 1266
PciSI GCTCTTC 1 cut(s) 711
PcsI WCGNNNNNNNCGW 1 cut(s) 1083
PctI GAATGC 1 cut(s) 662
PdmI GAANNNNTTC 1 cut(s) 1221
PfeI GAWTC 4 cut(s) 164, 1222, 1646, 2350
PflMI CCANNNNNTGG 1 cut(s) 2323
PinAI ACCGGT 1 cut(s) 723
PleI GAGTC 4 cut(s) 637, 743, 2040, 2089
PpsI GAGTC 4 cut(s) 637, 743, 2040, 2089
Psp6I CCWGG 2 cut(s) 1027, 1148
PspGI CCWGG 2 cut(s) 1027, 1148
PspN4I GGNNCC 5 cut(s) 141, 1257, 2151, 2256, 2280
PspPI GGNCC 3 cut(s) 615, 1837, 2069
PspXI VCTCGAGB 1 cut(s) 1085
PstI CTGCAG 1 cut(s) 1706
PvuII CAGCTG 1 cut(s) 1547
RsaI GTAC 7 cut(s) 1246, 1362, 1499, 1595, 1827, 2083, 2151
RsaNI GTAC 7 cut(s) 1245, 1361, 1498, 1594, 1826, 2082, 2150
RseI CAYNNNNRTG 5 cut(s) 371, 429, 474, 878, 1265
SalI GTCGAC 1 cut(s) 1860
SapI GCTCTTC 1 cut(s) 711
Sau3AI GATC 4 cut(s) 245, 706, 1240, 1912
Sau96I GGNCC 3 cut(s) 615, 1837, 2069
ScaI AGTACT 1 cut(s) 2083
SchI GAGTC 4 cut(s) 638, 743, 2041, 2089
ScrFI CCNGG 3 cut(s) 334, 1029, 1150
SduI GDGCHC 3 cut(s) 426, 723, 1260
SfaNI GCATC 7 cut(s) 139, 262, 310, 501, 628, 1423, 2226
SfcI CTRYAG 2 cut(s) 406, 1702
Sfr274I CTCGAG 1 cut(s) 1085
SinI GGWCC 3 cut(s) 615, 1837, 2069
SlaI CTCGAG 1 cut(s) 1085
SmiMI CAYNNNNRTG 5 cut(s) 371, 429, 474, 878, 1265
SmlI CTYRAG 5 cut(s) 447, 488, 642, 1085, 1559
SmoI CTYRAG 5 cut(s) 447, 488, 642, 1085, 1559
SphI GCATGC 3 cut(s) 370, 673, 1802
SsiI CCGC 7 cut(s) 485, 899, 1007, 1349, 1771, 2225, 2261
SspI AATATT 2 cut(s) 1340, 1875
SspMI CTAG 5 cut(s) 249, 626, 1916, 2088, 2100
StyD4I CCNGG 3 cut(s) 332, 1027, 1148
StyI CCWWGG 3 cut(s) 153, 834, 2099
TaaI ACNGT 6 cut(s) 112, 615, 910, 1308, 1598, 2313
TaiI ACGT 3 cut(s) 878, 1595, 2325
TaqI TCGA 5 cut(s) 244, 1086, 1649, 1861, 2333
TatI WGTACW 2 cut(s) 1497, 2081
TauI GCSGC 2 cut(s) 1010, 2227
TfiI GAWTC 4 cut(s) 164, 1222, 1646, 2350
TscAI CASTG 7 cut(s) 117, 229, 543, 559, 787, 1497, 1603
TseFI GTSAC 1 cut(s) 1890
TseI GCWGC 9 cut(s) 176, 307, 465, 1016, 1081, 1544, 1547, 1768, 2239
Tsp45I GTSAC 1 cut(s) 1890
TspGWI ACGGA 2 cut(s) 535, 1829
TspRI CASTG 7 cut(s) 117, 229, 543, 559, 787, 1497, 1603
Van91I CCANNNNNTGG 1 cut(s) 2323
Vha464I CTTAAG 2 cut(s) 488, 1559
VpaK11BI GGWCC 3 cut(s) 615, 1837, 2069
XapI RAATTY 7 cut(s) 82, 263, 278, 532, 689, 1321, 1426
XbaI TCTAGA 1 cut(s) 625
XceI RCATGY 6 cut(s) 370, 374, 673, 1102, 1712, 1802
XcmI CCANNNNNNNNNTGG 1 cut(s) 393
XhoI CTCGAG 1 cut(s) 1085
XmaJI CCTAGG 1 cut(s) 2099
XmiI GTMKAC 2 cut(s) 747, 1861
XmnI GAANNNNTTC 1 cut(s) 1221
XspI CTAG 5 cut(s) 249, 626, 1916, 2088, 2100
ZrmI AGTACT 1 cut(s) 2083
Zsp2I ATGCAT 2 cut(s) 290, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.