pycom12g14640

Domain of unknown function (DUF4666)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0007633
Physical Location & Seq
Forward (+)
17141428 .. 17141619
192 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g14640.1

Sequence Viewer

Length: 192 bp
ATGAGAGCACATTTAGGAGGCAGGGCTCTGGGTCTACACCAGGCGTTTAATCGAGCGGAGGTGAAGAAGCAGGCGGAGGCAGCTCGAGGCGGCGCAGAATCTGGCACGGCAGAACCCACCATGGAGCAGAGGCGATCGAACGGAGGAATGAGTTATCGGACGGTCAAGGCTGCGGGATCTGTGACGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4666

Protein Analysis

64

Amino Acids

6.62

Weight (kDa)

10.4

Isoelectric Point (pI)

37.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 56
AccI GTMKAC 1 cut(s) 34
AciI CCGC 4 cut(s) 56, 74, 90, 173
AclWI GGATC 1 cut(s) 184
AflIII ACRYGT 1 cut(s) 185
AjiI CACGTC 1 cut(s) 186
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Alw21I GWGCWC 1 cut(s) 10
AlwI GGATC 1 cut(s) 184
AlwNI CAGNNNCTG 1 cut(s) 101
Ama87I CYCGRG 1 cut(s) 84
ApeKI GCWGC 2 cut(s) 80, 170
AspLEI GCGC 1 cut(s) 95
AsuHPI GGTGA 1 cut(s) 73
AvaI CYCGRG 1 cut(s) 84
BanII GRGCYC 1 cut(s) 28
Bbv12I GWGCWC 1 cut(s) 10
BbvI GCAGC 2 cut(s) 92, 157
BceAI ACGGC 1 cut(s) 123
BciT130I CCWGG 1 cut(s) 41
BisI GCNGC 3 cut(s) 81, 91, 171
BlsI GCNGC 3 cut(s) 82, 92, 172
Bme1390I CCNGG 1 cut(s) 41
BmeT110I CYCGRG 1 cut(s) 84
BmgBI CACGTC 1 cut(s) 186
BmrFI CCNGG 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 120
BseBI CCWGG 1 cut(s) 41
BseDI CCNNGG 1 cut(s) 120
BseXI GCAGC 2 cut(s) 92, 157
Bsh1285I CGRYCG 1 cut(s) 137
BsiEI CGRYCG 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 10
BsiHKCI CYCGRG 1 cut(s) 84
BsoBI CYCGRG 1 cut(s) 84
Bsp1286I GDGCHC 2 cut(s) 10, 28
Bsp143I GATC 2 cut(s) 134, 176
Bsp19I CCATGG 1 cut(s) 120
BspACI CCGC 4 cut(s) 56, 74, 90, 173
BspPI GGATC 1 cut(s) 184
BsrBI CCGCTC 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 2 cut(s) 134, 176
BssT1I CCWWGG 1 cut(s) 120
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 72
BstDSI CCRYGG 1 cut(s) 120
BstHHI GCGC 1 cut(s) 95
BstKTI GATC 2 cut(s) 137, 179
BstMBI GATC 2 cut(s) 134, 176
BstMCI CGRYCG 1 cut(s) 137
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 39
BstV1I GCAGC 2 cut(s) 92, 157
BstX2I RGATCY 1 cut(s) 176
BstYI RGATCY 1 cut(s) 176
BtgI CCRYGG 1 cut(s) 120
BtrI CACGTC 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 72
CaiI CAGNNNCTG 1 cut(s) 101
CfoI GCGC 1 cut(s) 95
CviAII CATG 1 cut(s) 121
CviJI RGCY 3 cut(s) 26, 83, 170
CviKI_1 RGCY 3 cut(s) 26, 83, 170
DpnI GATC 2 cut(s) 136, 178
DpnII GATC 2 cut(s) 134, 176
EciI GGCGGA 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 28
Eco88I CYCGRG 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 120
EcoT38I GRGCYC 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 1 cut(s) 124
FaiI YATR 1 cut(s) 122
FatI CATG 1 cut(s) 120
FauI CCCGC 1 cut(s) 166
FblI GTMKAC 1 cut(s) 34
Fnu4HI GCNGC 3 cut(s) 81, 91, 171
FriOI GRGCYC 1 cut(s) 28
Fsp4HI GCNGC 3 cut(s) 81, 91, 171
GlaI GCGC 1 cut(s) 94
GluI GCNGC 3 cut(s) 81, 91, 171
HhaI GCGC 1 cut(s) 95
Hin1II CATG 1 cut(s) 124
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HinfI GANTC 1 cut(s) 98
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 35
Hpy188I TCNGA 1 cut(s) 159
Hpy8I GTNNAC 1 cut(s) 35
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpySE526I ACGT 1 cut(s) 185
Hsp92II CATG 1 cut(s) 124
HspAI GCGC 1 cut(s) 93
Kzo9I GATC 2 cut(s) 134, 176
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 6 cut(s) 7, 14, 26, 53, 56, 87
Lsp1109I GCAGC 2 cut(s) 92, 157
MaeII ACGT 1 cut(s) 185
MaeIII GTNAC 1 cut(s) 181
MalI GATC 2 cut(s) 136, 178
MbiI CCGCTC 1 cut(s) 56
MboI GATC 2 cut(s) 134, 176
MboII GAAGA 1 cut(s) 76
MflI RGATCY 1 cut(s) 176
MhlI GDGCHC 2 cut(s) 10, 28
MnlI CCTC 6 cut(s) 11, 52, 70, 80, 123, 137
MseI TTAA 1 cut(s) 48
MspR9I CCNGG 1 cut(s) 41
MvaI CCWGG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 80
NcoI CCATGG 1 cut(s) 120
NdeII GATC 2 cut(s) 134, 176
NlaIII CATG 1 cut(s) 124
NmuCI GTSAC 1 cut(s) 181
PaeR7I CTCGAG 1 cut(s) 84
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 3 cut(s) 82, 92, 172
Ple19I CGATCG 1 cut(s) 137
Psp6I CCWGG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 39
PspXI VCTCGAGB 1 cut(s) 84
PstNI CAGNNNCTG 1 cut(s) 101
PsuI RGATCY 1 cut(s) 176
PvuI CGATCG 1 cut(s) 137
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 3 cut(s) 81, 91, 171
Sau3AI GATC 2 cut(s) 134, 176
ScrFI CCNGG 1 cut(s) 41
SduI GDGCHC 2 cut(s) 10, 28
SetI ASST 3 cut(s) 63, 85, 188
Sfr274I CTCGAG 1 cut(s) 84
SlaI CTCGAG 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
SsiI CCGC 4 cut(s) 56, 74, 90, 173
StyD4I CCNGG 1 cut(s) 39
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 1 cut(s) 163
TaiI ACGT 1 cut(s) 188
TaqI TCGA 3 cut(s) 52, 85, 137
TauI GCSGC 1 cut(s) 93
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 2 cut(s) 80, 170
Tsp45I GTSAC 1 cut(s) 181
TspGWI ACGGA 1 cut(s) 156
XhoI CTCGAG 1 cut(s) 84
XmiI GTMKAC 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.