Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0007633

Physical Location & Seq

Genomic Coordinates Forward (+)

20689872 .. 20691094

Gene Structure 1223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G240000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCTGAGGGGCTGCAAAGGTCTGAAAGCACGTTCAGGAGACAGGGGTCTTCGGGTTTGATTTGGGACGACAAGTTTCTACAGAGGGCGTTGAACCAAGTGGAGGCCGAAAAGCAGCAGGAAGCAGCTCAGCAGGCTCAGGCTGCAGAATCTGGTGCTGCGGTCCCCACCATGGAGCGCAGCCGATCCAACGGCGGACGGGGGTATCGGACGGTCAAGGTTTCACCACAGGCCACGGACCCACCCTCCCCTAAAGTCTCAGGCTGTGGCCTCTGCGGCGCCTTCGGCAAACCAAAGCCCTCGTCAGCGCGTCGACCCAGATCGAATAAGCGAAGGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4666

Protein Analysis

114

Amino Acids

12.2

Weight (kDa)

10.64

Isoelectric Point (pI)

83.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15400 AT1G15400 AT1G15400 AT1G80180
fragaria_vesca	FvH4_1g03570
malus_domestica	MD02G1035000.v1.1
prunus_persica	Prupe.7G240000_v2.0.a1
pyrus_communis	pycom02g02860 pycom02g02880 pycom02g02900 pycom12g14640 pycom15g15740 pycom810g00020
rosa_chinensis	RchiOBHm_Chr2g0089091 RchiOBHm_Chr2g0162401
rosa_laevigata	RLG00000015990
rosa_multiflora	Rmu_sc0005510.1_g000003
rosa_roxburghii	Rroxscaffold_2G00152270
rosa_rugosa	Rorug01G0487400
rosa_samantha	Rh2AG042800 Rh2BG041300 Rh2CG042900 Rh2DG041900
rosa_wichuraiana	Rw2G003480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	278
AccI	GTMKAC	1 cut(s)	313
AccII	CGCG	1 cut(s)	310
AciI	CCGC	3 cut(s)	161, 195, 276
AclWI	GGATC	1 cut(s)	180
AcyI	GRCGYC	1 cut(s)	279
AfiI	CCNNNNNNNGG	2 cut(s)	103, 172
AgsI	TTSAA	1 cut(s)	94
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
Alw26I	GTCTC	2 cut(s)	34, 262
AlwI	GGATC	1 cut(s)	180
AlwNI	CAGNNNCTG	1 cut(s)	152
AoxI	GGCC	3 cut(s)	105, 231, 268
ApeKI	GCWGC	6 cut(s)	13, 115, 125, 143, 158, 180
ArsI	GACNNNNNNTTYG	2 cut(s)	287, 319
AspLEI	GCGC	3 cut(s)	180, 281, 310
AspS9I	GGNCC	2 cut(s)	163, 238
AsuHPI	GGTGA	1 cut(s)	216
AvaII	GGWCC	2 cut(s)	163, 238
BaeI	ACNNNNGTAYC	2 cut(s)	188, 221
BanI	GGYRCC	1 cut(s)	278
BbsI	GAAGAC	1 cut(s)	42
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	5 cut(s)	127, 130, 137, 145, 192
BceAI	ACGGC	1 cut(s)	208
BcoDI	GTCTC	2 cut(s)	34, 262
BfmI	CTRYAG	2 cut(s)	80, 144
BfoI	RGCGCY	1 cut(s)	282
BglI	GCCNNNNNGGC	1 cut(s)	276
BisI	GCNGC	7 cut(s)	14, 116, 126, 144, 159, 181, 277
BlpI	GCTNAGC	1 cut(s)	129
BlsI	GCNGC	7 cut(s)	15, 117, 127, 145, 160, 182, 278
Bme18I	GGWCC	2 cut(s)	163, 238
BmgT120I	GGNCC	2 cut(s)	163, 238
BmiI	GGNNCC	3 cut(s)	165, 240, 280
BoxI	GACNNNNGTC	1 cut(s)	46
BpiI	GAAGAC	1 cut(s)	42
Bpu10I	CCTNAGC	2 cut(s)	6, 138
Bpu1102I	GCTNAGC	1 cut(s)	129
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	171, 234
BsaXI	ACNNNNNCTCC	2 cut(s)	230, 260
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 172
BseDI	CCNNGG	2 cut(s)	171, 234
BseLI	CCNNNNNNNGG	2 cut(s)	103, 172
BseMII	CTCAG	3 cut(s)	143, 152, 273
BseXI	GCAGC	5 cut(s)	127, 130, 137, 145, 192
Bsh1236I	CGCG	1 cut(s)	310
BshFI	GGCC	3 cut(s)	107, 233, 270
BshNI	GGYRCC	1 cut(s)	278
BslFI	GGGAC	2 cut(s)	80, 149
BslI	CCNNNNNNNGG	2 cut(s)	103, 172
BsmAI	GTCTC	2 cut(s)	34, 262
BsmFI	GGGAC	2 cut(s)	80, 149
BsnI	GGCC	3 cut(s)	107, 233, 270
Bsp143I	GATC	2 cut(s)	185, 320
Bsp1720I	GCTNAGC	1 cut(s)	129
Bsp19I	CCATGG	1 cut(s)	171
BspACI	CCGC	3 cut(s)	161, 195, 276
BspANI	GGCC	3 cut(s)	107, 233, 270
BspCNI	CTCAG	3 cut(s)	142, 151, 272
BspFNI	CGCG	1 cut(s)	310
BspLI	GGNNCC	3 cut(s)	165, 240, 280
BspMAI	CTGCAG	1 cut(s)	148
BspPI	GGATC	1 cut(s)	180
BspT107I	GGYRCC	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	171, 234
BssMI	GATC	2 cut(s)	185, 320
BssNI	GRCGYC	1 cut(s)	279
BssT1I	CCWWGG	1 cut(s)	171
Bst4CI	ACNGT	1 cut(s)	214
BstACI	GRCGYC	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	4 cut(s)	6, 129, 138, 259
BstDSI	CCRYGG	2 cut(s)	171, 234
BstFNI	CGCG	1 cut(s)	310
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	3 cut(s)	180, 281, 310
BstKTI	GATC	2 cut(s)	188, 323
BstMAI	GTCTC	2 cut(s)	34, 262
BstMBI	GATC	2 cut(s)	185, 320
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 143, 276, 285
BstPAI	GACNNNNGTC	1 cut(s)	46
BstSFI	CTRYAG	2 cut(s)	80, 144
BstUI	CGCG	1 cut(s)	310
BstV1I	GCAGC	5 cut(s)	127, 130, 137, 145, 192
BstV2I	GAAGAC	1 cut(s)	42
BsuRI	GGCC	3 cut(s)	107, 233, 270
BtgI	CCRYGG	2 cut(s)	171, 234
Cac8I	GCNNGC	1 cut(s)	135
CaiI	CAGNNNCTG	1 cut(s)	152
CfoI	GCGC	3 cut(s)	180, 281, 310
Cfr13I	GGNCC	2 cut(s)	163, 238
CseI	GACGC	1 cut(s)	299
CviAII	CATG	1 cut(s)	172
DdeI	CTNAG	4 cut(s)	6, 129, 138, 259
DinI	GGCGCC	1 cut(s)	280
DpnI	GATC	2 cut(s)	187, 322
DpnII	GATC	2 cut(s)	185, 320
EciI	GGCGGA	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	171
Eco47I	GGWCC	2 cut(s)	163, 238
EcoT14I	CCWWGG	1 cut(s)	171
EgeI	GGCGCC	1 cut(s)	280
EheI	GGCGCC	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	1 cut(s)	175
FaiI	YATR	2 cut(s)	173, 340
FaqI	GGGAC	2 cut(s)	80, 149
FatI	CATG	1 cut(s)	171
FblI	GTMKAC	1 cut(s)	313
Fnu4HI	GCNGC	7 cut(s)	14, 116, 126, 144, 159, 181, 277
Fsp4HI	GCNGC	7 cut(s)	14, 116, 126, 144, 159, 181, 277
GlaI	GCGC	3 cut(s)	179, 280, 309
GluI	GCNGC	7 cut(s)	14, 116, 126, 144, 159, 181, 277
HaeII	RGCGCY	1 cut(s)	282
HaeIII	GGCC	3 cut(s)	107, 233, 270
HgaI	GACGC	1 cut(s)	299
HhaI	GCGC	3 cut(s)	180, 281, 310
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	1 cut(s)	175
Hin6I	GCGC	3 cut(s)	178, 279, 308
HinP1I	GCGC	3 cut(s)	178, 279, 308
HincII	GTYRAC	1 cut(s)	314
HindII	GTYRAC	1 cut(s)	314
HinfI	GANTC	1 cut(s)	149
HphI	GGTGA	1 cut(s)	216
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188I	TCNGA	2 cut(s)	25, 210
Hpy188III	TCNNGA	1 cut(s)	37
Hpy8I	GTNNAC	1 cut(s)	314
Hpy99I	CGWCG	1 cut(s)	315
HpyAV	CCTTC	2 cut(s)	292, 327
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	2 cut(s)	16, 146
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 143, 276, 285
HpyF3I	CTNAG	4 cut(s)	6, 129, 138, 259
HpySE526I	ACGT	1 cut(s)	32
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	1 cut(s)	175
HspAI	GCGC	3 cut(s)	178, 279, 308
KasI	GGCGCC	1 cut(s)	278
Kzo9I	GATC	2 cut(s)	185, 320
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	9 cut(s)	22, 29, 104, 119, 125, 138, 215, 246, 331
Lsp1109I	GCAGC	5 cut(s)	127, 130, 137, 145, 192
MaeII	ACGT	1 cut(s)	32
MalI	GATC	2 cut(s)	187, 322
MboI	GATC	2 cut(s)	185, 320
MboII	GAAGA	1 cut(s)	42
Mly113I	GGCGCC	1 cut(s)	279
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	5 cut(s)	78, 97, 256, 281, 310
MvnI	CGCG	1 cut(s)	310
MwoI	GCNNNNNNNGC	4 cut(s)	134, 143, 276, 285
NarI	GGCGCC	1 cut(s)	279
NcoI	CCATGG	1 cut(s)	171
NdeII	GATC	2 cut(s)	185, 320
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	3 cut(s)	165, 240, 280
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	7 cut(s)	15, 117, 127, 145, 160, 182, 278
PluTI	GGCGCC	1 cut(s)	282
PshAI	GACNNNNGTC	1 cut(s)	46
PspN4I	GGNNCC	3 cut(s)	165, 240, 280
PspPI	GGNCC	2 cut(s)	163, 238
PstI	CTGCAG	1 cut(s)	148
PstNI	CAGNNNCTG	1 cut(s)	152
SalI	GTCGAC	1 cut(s)	312
SatI	GCNGC	7 cut(s)	14, 116, 126, 144, 159, 181, 277
Sau3AI	GATC	2 cut(s)	185, 320
Sau96I	GGNCC	2 cut(s)	163, 238
SetI	ASST	5 cut(s)	23, 35, 130, 222, 338
SfcI	CTRYAG	2 cut(s)	80, 144
SfoI	GGCGCC	1 cut(s)	280
SinI	GGWCC	2 cut(s)	163, 238
SsiI	CCGC	3 cut(s)	161, 195, 276
SspDI	GGCGCC	1 cut(s)	278
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	2 cut(s)	313, 323
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	1 cut(s)	149
TseI	GCWGC	6 cut(s)	13, 115, 125, 143, 158, 180
TspGWI	ACGGA	1 cut(s)	251
VpaK11BI	GGWCC	2 cut(s)	163, 238
XmiI	GTMKAC	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.