RchiOBHm_Chr2g0162401

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0007633
Physical Location & Seq
Reverse (-)
78131531 .. 78132059
529 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53068

Sequence Viewer

Length: 180 bp
ATGTGCCGGTGTACATCGGCAACAAAATGGAGCGGTCGTCGTCTCCGCCGAGCTCCTCAACAAGCTGGCGCAGGAGTACGACTACAAGCAGCGAGGCGTGCTCCAGATTCTCTGCCACGTGGTGGTGTTCGAGTGCGTCCTCGAGACGCTCCGACTCGGATGCATCACACAGTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

6.59

Weight (kDa)

12.0

Isoelectric Point (pI)

83.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 122
AccBSI CCGCTC 1 cut(s) 33
AciI CCGC 2 cut(s) 33, 46
AcvI CACGTG 1 cut(s) 119
AdeI CACNNNGTG 1 cut(s) 122
AfaI GTAC 2 cut(s) 13, 78
AfiI CCNNNNNNNGG 1 cut(s) 122
AluBI AGCT 2 cut(s) 53, 65
AluI AGCT 2 cut(s) 53, 65
Alw21I GWGCWC 2 cut(s) 55, 103
Alw26I GTCTC 2 cut(s) 47, 138
Ama87I CYCGRG 1 cut(s) 141
ApeKI GCWGC 1 cut(s) 89
AspLEI GCGC 1 cut(s) 71
AvaI CYCGRG 1 cut(s) 141
BanII GRGCYC 1 cut(s) 55
BbrPI CACGTG 1 cut(s) 119
Bbv12I GWGCWC 2 cut(s) 55, 103
BbvI GCAGC 1 cut(s) 101
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BcoDI GTCTC 2 cut(s) 47, 138
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
BmeT110I CYCGRG 1 cut(s) 141
BmsI GCATC 2 cut(s) 150, 172
BplI GAGNNNNNCTC 2 cut(s) 85, 117
BpmI CTGGAG 1 cut(s) 87
BsaAI YACGTR 1 cut(s) 119
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse118I RCCGGY 1 cut(s) 6
BseGI GGATG 1 cut(s) 165
BseLI CCNNNNNNNGG 1 cut(s) 122
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 101
Bsh1285I CGRYCG 1 cut(s) 37
BsiEI CGRYCG 1 cut(s) 37
BsiHKAI GWGCWC 2 cut(s) 55, 103
BsiHKCI CYCGRG 1 cut(s) 141
BsiSI CCGG 1 cut(s) 7
BslI CCNNNNNNNGG 1 cut(s) 122
BsmAI GTCTC 2 cut(s) 47, 138
BsmBI CGTCTC 2 cut(s) 47, 138
BsoBI CYCGRG 1 cut(s) 141
Bsp1286I GDGCHC 2 cut(s) 55, 103
Bsp1407I TGTACA 1 cut(s) 11
BspACI CCGC 2 cut(s) 33, 46
BsrBI CCGCTC 1 cut(s) 33
BsrFI RCCGGY 1 cut(s) 6
BsrGI TGTACA 1 cut(s) 11
BssAI RCCGGY 1 cut(s) 6
Bst4CI ACNGT 1 cut(s) 172
BstAUI TGTACA 1 cut(s) 11
BstBAI YACGTR 1 cut(s) 119
BstC8I GCNNGC 2 cut(s) 67, 99
BstF5I GGATG 1 cut(s) 165
BstHHI GCGC 1 cut(s) 71
BstMAI GTCTC 2 cut(s) 47, 138
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstV1I GCAGC 1 cut(s) 101
BtsCI GGATG 1 cut(s) 165
Cac8I GCNNGC 2 cut(s) 67, 99
CfoI GCGC 1 cut(s) 71
Cfr10I RCCGGY 1 cut(s) 6
CseI GACGC 2 cut(s) 125, 155
Csp6I GTAC 2 cut(s) 12, 77
CviJI RGCY 2 cut(s) 53, 65
CviKI_1 RGCY 2 cut(s) 53, 65
CviQI GTAC 2 cut(s) 12, 77
DraIII CACNNNGTG 1 cut(s) 122
EciI GGCGGA 1 cut(s) 35
Ecl136II GAGCTC 1 cut(s) 53
Eco24I GRGCYC 1 cut(s) 55
Eco53kI GAGCTC 1 cut(s) 53
Eco72I CACGTG 1 cut(s) 119
Eco88I CYCGRG 1 cut(s) 141
EcoICRI GAGCTC 1 cut(s) 53
EcoT22I ATGCAT 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 55
Esp3I CGTCTC 2 cut(s) 47, 138
Fnu4HI GCNGC 1 cut(s) 90
FokI GGATG 1 cut(s) 172
FriOI GRGCYC 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 90
GlaI GCGC 1 cut(s) 70
GluI GCNGC 1 cut(s) 90
GsuI CTGGAG 1 cut(s) 87
HapII CCGG 1 cut(s) 7
HgaI GACGC 2 cut(s) 125, 155
HhaI GCGC 1 cut(s) 71
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HinfI GANTC 2 cut(s) 107, 154
HpaII CCGG 1 cut(s) 7
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 2 cut(s) 153, 159
Hpy188III TCNNGA 2 cut(s) 104, 143
Hpy8I GTNNAC 1 cut(s) 12
Hpy99I CGWCG 1 cut(s) 42
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 1 cut(s) 163
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpySE526I ACGT 1 cut(s) 118
HspAI GCGC 1 cut(s) 69
LmnI GCTCC 4 cut(s) 30, 58, 106, 154
LpnPI CCDG 4 cut(s) 20, 51, 57, 117
Lsp1109I GCAGC 1 cut(s) 101
LweI GCATC 2 cut(s) 150, 172
MaeII ACGT 1 cut(s) 118
MbiI CCGCTC 1 cut(s) 33
MhlI GDGCHC 2 cut(s) 55, 103
MlyI GAGTC 1 cut(s) 148
MmeI TCCRAC 1 cut(s) 176
MnlI CCTC 3 cut(s) 66, 87, 150
Mph1103I ATGCAT 1 cut(s) 165
MspI CCGG 1 cut(s) 7
MwoI GCNNNNNNNGC 1 cut(s) 98
NmeAIII GCCGAG 1 cut(s) 74
NsiI ATGCAT 1 cut(s) 165
PaeR7I CTCGAG 1 cut(s) 141
PcsI WCGNNNNNNNCGW 1 cut(s) 46
PfeI GAWTC 1 cut(s) 107
PflMI CCANNNNNTGG 1 cut(s) 122
PkrI GCNGC 1 cut(s) 91
PleI GAGTC 1 cut(s) 148
PmaCI CACGTG 1 cut(s) 119
PmlI CACGTG 1 cut(s) 119
PpsI GAGTC 1 cut(s) 148
Ppu21I YACGTR 1 cut(s) 119
Psp124BI GAGCTC 1 cut(s) 55
PspCI CACGTG 1 cut(s) 119
RsaI GTAC 2 cut(s) 13, 78
RsaNI GTAC 2 cut(s) 12, 77
SacI GAGCTC 1 cut(s) 55
SatI GCNGC 1 cut(s) 90
SchI GAGTC 1 cut(s) 148
SduI GDGCHC 2 cut(s) 55, 103
SetI ASST 3 cut(s) 55, 67, 121
SfaNI GCATC 2 cut(s) 150, 172
Sfr274I CTCGAG 1 cut(s) 141
SlaI CTCGAG 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 141
SmoI CTYRAG 1 cut(s) 141
SsiI CCGC 2 cut(s) 33, 46
SstI GAGCTC 1 cut(s) 55
TaaI ACNGT 1 cut(s) 172
TaiI ACGT 1 cut(s) 121
TaqI TCGA 2 cut(s) 130, 142
TatI WGTACW 1 cut(s) 11
TfiI GAWTC 1 cut(s) 107
TseI GCWGC 1 cut(s) 89
Van91I CCANNNNNTGG 1 cut(s) 122
XhoI CTCGAG 1 cut(s) 141
Zsp2I ATGCAT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.