Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007633

Physical Location & Seq

Genomic Coordinates Forward (+)

89293220 .. 89293534

Gene Structure 315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00152270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGCGGAATTGCAGAGGTCAGAGAGCACTTTCAGGAGGCAAGGATCTTCCGGTTTGATTTGGGACGACAAATTTCTACAGAGGGCTTTGAATCAAGTCGAGGCCGAGAAGCAAGCTGAAGCTGCCGCCGCTGCCAGCGGCTCCGACGGTCCTGCAGCTGACGGCGGAGCTCCCGGAGGCAGGGGGTATCGGACGGTCAAGGTTGCGCCGCCGATGATGGACCCGCCGTCGCCGAAGGTGTCCGGGTGTTGCGGAGTATTCGGAAAGCCGGCGGCGTCGAAGCGGCCCAGATCGAACAAGCGGAGATCGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4666

Protein Analysis

104

Amino Acids

10.93

Weight (kDa)

10.1

Isoelectric Point (pI)

69.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4666	PF15697	1 - 94	5.4e-23	Domain of unknown function (DUF4666)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15400 AT1G15400 AT1G15400 AT1G80180
fragaria_vesca	FvH4_1g03570
malus_domestica	MD02G1035000.v1.1
prunus_persica	Prupe.7G240000_v2.0.a1
pyrus_communis	pycom02g02860 pycom02g02880 pycom02g02900 pycom12g14640 pycom15g15740 pycom810g00020
rosa_chinensis	RchiOBHm_Chr2g0089091 RchiOBHm_Chr2g0162401
rosa_laevigata	RLG00000015990
rosa_multiflora	Rmu_sc0005510.1_g000003
rosa_roxburghii	Rroxscaffold_2G00152270
rosa_rugosa	Rorug01G0487400
rosa_samantha	Rh2AG042800 Rh2BG041300 Rh2CG042900 Rh2DG041900
rosa_wichuraiana	Rw2G003480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	52
AcsI	RAATTY	1 cut(s)	71
AcuI	CTGAAG	1 cut(s)	138
AcyI	GRCGYC	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	180
AgsI	TTSAA	1 cut(s)	91
AhdI	GACNNNNNGTC	1 cut(s)	226
AluBI	AGCT	4 cut(s)	116, 122, 158, 170
AluI	AGCT	4 cut(s)	116, 122, 158, 170
Alw21I	GWGCWC	2 cut(s)	29, 172
AlwI	GGATC	1 cut(s)	52
AoxI	GGCC	2 cut(s)	102, 284
ApeKI	GCWGC	3 cut(s)	122, 131, 155
ApoI	RAATTY	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	3 cut(s)	149, 220, 285
AsuC2I	CCSGG	2 cut(s)	174, 244
AvaII	GGWCC	2 cut(s)	149, 220
BanII	GRGCYC	1 cut(s)	172
Bbv12I	GWGCWC	2 cut(s)	29, 172
BbvI	GCAGC	3 cut(s)	109, 118, 167
BccI	CCATC	1 cut(s)	211
BceAI	ACGGC	2 cut(s)	178, 211
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BcnI	CCSGG	2 cut(s)	174, 244
BfmI	CTRYAG	2 cut(s)	77, 153
BisI	GCNGC	9 cut(s)	123, 126, 129, 132, 139, 156, 209, 273, 284
BlsI	GCNGC	9 cut(s)	124, 127, 130, 133, 140, 157, 210, 274, 285
Bme1390I	CCNGG	2 cut(s)	174, 244
Bme18I	GGWCC	2 cut(s)	149, 220
BmeRI	GACNNNNNGTC	1 cut(s)	226
BmgT120I	GGNCC	3 cut(s)	149, 220, 285
BmiI	GGNNCC	2 cut(s)	142, 222
BmrFI	CCNGG	2 cut(s)	174, 244
BpuMI	CCSGG	2 cut(s)	174, 244
BsaHI	GRCGYC	1 cut(s)	275
BsaWI	WCCGGW	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse118I	RCCGGY	1 cut(s)	268
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseXI	GCAGC	3 cut(s)	109, 118, 167
BshFI	GGCC	2 cut(s)	104, 286
BsiHKAI	GWGCWC	2 cut(s)	29, 172
BsiSI	CCGG	4 cut(s)	51, 174, 243, 269
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	77
BsnI	GGCC	2 cut(s)	104, 286
Bsp1286I	GDGCHC	2 cut(s)	29, 172
Bsp143I	GATC	3 cut(s)	44, 290, 305
BspANI	GGCC	2 cut(s)	104, 286
BspLI	GGNNCC	2 cut(s)	142, 222
BspMAI	CTGCAG	1 cut(s)	157
BspPI	GGATC	1 cut(s)	52
BsrFI	RCCGGY	1 cut(s)	268
BssAI	RCCGGY	1 cut(s)	268
BssMI	GATC	3 cut(s)	44, 290, 305
BssNI	GRCGYC	1 cut(s)	275
Bst4CI	ACNGT	2 cut(s)	149, 196
BstACI	GRCGYC	1 cut(s)	275
BstC8I	GCNNGC	3 cut(s)	114, 136, 270
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	3 cut(s)	47, 293, 308
BstMBI	GATC	3 cut(s)	44, 290, 305
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 128, 131
BstSCI	CCNGG	2 cut(s)	172, 242
BstSFI	CTRYAG	2 cut(s)	77, 153
BstV1I	GCAGC	3 cut(s)	109, 118, 167
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BsuRI	GGCC	2 cut(s)	104, 286
Cac8I	GCNNGC	3 cut(s)	114, 136, 270
CfoI	GCGC	1 cut(s)	208
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	3 cut(s)	149, 220, 285
CseI	GACGC	1 cut(s)	264
CviJI	RGCY	9 cut(s)	86, 104, 116, 122, 141, 158, 170, 268, 286
CviKI_1	RGCY	9 cut(s)	86, 104, 116, 122, 141, 158, 170, 268, 286
DpnI	GATC	3 cut(s)	46, 292, 307
DpnII	GATC	3 cut(s)	44, 290, 305
DriI	GACNNNNNGTC	1 cut(s)	226
Eam1105I	GACNNNNNGTC	1 cut(s)	226
EciI	GGCGGA	2 cut(s)	20, 180
Ecl136II	GAGCTC	1 cut(s)	170
Eco24I	GRGCYC	1 cut(s)	172
Eco47I	GGWCC	2 cut(s)	149, 220
Eco53kI	GAGCTC	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	138
EcoICRI	GAGCTC	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	172
FaqI	GGGAC	1 cut(s)	77
FauI	CCCGC	1 cut(s)	231
Fnu4HI	GCNGC	9 cut(s)	123, 126, 129, 132, 139, 156, 209, 273, 284
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	9 cut(s)	123, 126, 129, 132, 139, 156, 209, 273, 284
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	9 cut(s)	123, 126, 129, 132, 139, 156, 209, 273, 284
HaeIII	GGCC	2 cut(s)	104, 286
HapII	CCGG	4 cut(s)	51, 174, 243, 269
HgaI	GACGC	1 cut(s)	264
HhaI	GCGC	1 cut(s)	208
Hin1I	GRCGYC	1 cut(s)	275
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HinfI	GANTC	1 cut(s)	91
HpaII	CCGG	4 cut(s)	51, 174, 243, 269
Hpy188I	TCNGA	4 cut(s)	22, 145, 192, 263
Hpy188III	TCNNGA	1 cut(s)	34
Hpy99I	CGWCG	3 cut(s)	149, 232, 280
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	2 cut(s)	149, 196
HpyCH4V	TGCA	2 cut(s)	13, 155
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 128, 131
Hsp92I	GRCGYC	1 cut(s)	275
HspAI	GCGC	1 cut(s)	206
KroI	GCCGGC	1 cut(s)	268
KroNI	GCCGGC	1 cut(s)	270
Kzo9I	GATC	3 cut(s)	44, 290, 305
LmnI	GCTCC	3 cut(s)	146, 167, 175
LpnPI	CCDG	9 cut(s)	19, 64, 148, 165, 166, 187, 256, 282, 301
Lsp1109I	GCAGC	3 cut(s)	109, 118, 167
MalI	GATC	3 cut(s)	46, 292, 307
MboI	GATC	3 cut(s)	44, 290, 305
MboII	GAAGA	1 cut(s)	39
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	2 cut(s)	29, 172
MluCI	AATT	2 cut(s)	8, 71
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	5 cut(s)	9, 30, 75, 94, 170
MroNI	GCCGGC	1 cut(s)	268
MspA1I	CMGCKG	3 cut(s)	131, 138, 158
MspI	CCGG	4 cut(s)	51, 174, 243, 269
MspR9I	CCNGG	2 cut(s)	174, 244
MwoI	GCNNNNNNNGC	3 cut(s)	122, 128, 131
NaeI	GCCGGC	1 cut(s)	270
NciI	CCSGG	2 cut(s)	174, 244
NdeII	GATC	3 cut(s)	44, 290, 305
NgoMIV	GCCGGC	1 cut(s)	268
NlaIV	GGNNCC	2 cut(s)	142, 222
NmeAIII	GCCGAG	1 cut(s)	130
PdiI	GCCGGC	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	91
PfoI	TCCNGGA	1 cut(s)	172
PkrI	GCNGC	9 cut(s)	124, 127, 130, 133, 140, 157, 210, 274, 285
Psp124BI	GAGCTC	1 cut(s)	172
PspN4I	GGNNCC	2 cut(s)	142, 222
PspPI	GGNCC	3 cut(s)	149, 220, 285
PstI	CTGCAG	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	158
SacI	GAGCTC	1 cut(s)	172
SatI	GCNGC	9 cut(s)	123, 126, 129, 132, 139, 156, 209, 273, 284
Sau3AI	GATC	3 cut(s)	44, 290, 305
Sau96I	GGNCC	3 cut(s)	149, 220, 285
ScrFI	CCNGG	2 cut(s)	174, 244
SduI	GDGCHC	2 cut(s)	29, 172
SetI	ASST	7 cut(s)	20, 118, 124, 160, 172, 204, 240
SfcI	CTRYAG	2 cut(s)	77, 153
SinI	GGWCC	2 cut(s)	149, 220
Sse9I	AATT	2 cut(s)	8, 71
SstI	GAGCTC	1 cut(s)	172
StyD4I	CCNGG	2 cut(s)	172, 242
TaaI	ACNGT	2 cut(s)	149, 196
TaqI	TCGA	4 cut(s)	99, 278, 293, 308
TasI	AATT	2 cut(s)	8, 71
TauI	GCSGC	6 cut(s)	128, 131, 141, 211, 275, 286
TfiI	GAWTC	1 cut(s)	91
TseI	GCWGC	3 cut(s)	122, 131, 155
VpaK11BI	GGWCC	2 cut(s)	149, 220
XapI	RAATTY	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.