FvH4_1g03570

Domain of unknown function (DUF4666)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0007633
Physical Location & Seq
Reverse (-)
1952011 .. 1952355
345 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03570.t1

Sequence Viewer

Length: 345 bp
ATGGCGGAATTGCAGAGGTCCGAGAGCACCTTCAGGAGGCAAGGATCGTCCGGTTTGATTTGGGATGATAAATTTCTACAGAGGGCTTTGAATCAAGTCGAGGCCGAGAAGCAAGCCGAAGCCGCCGCCGCCGCCGCCGGTCAAGGCCAGAGCGGCTCAGACGGGCCTGCGGCTTCTGAGGGAGGAGCTGGAGGAGGAGGAGGAGGAGGGAGGGGGTATCGGACGGTGAAGGTTGCGCCGCCGATGATGGACCCGCCGTCGCCGAAGGTGTCAGGGTGTTGTGGAGTGTTTGGGAAGCCGGCGGCGTCGAAGCGGCCCAGATCGAACAAGCGGAGGTCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4666

Protein Analysis

115

Amino Acids

11.66

Weight (kDa)

10.1

Isoelectric Point (pI)

74.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4666 PF15697 1 - 104 9.2e-27 Domain of unknown function (DUF4666)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 153
AclWI GGATC 1 cut(s) 52
AcsI RAATTY 1 cut(s) 71
AcuI CTGAAG 1 cut(s) 16
AcyI GRCGYC 1 cut(s) 305
AfiI CCNNNNNNNGG 1 cut(s) 36
AgsI TTSAA 1 cut(s) 91
AhdI GACNNNNNGTC 1 cut(s) 256
AluBI AGCT 1 cut(s) 188
AluI AGCT 1 cut(s) 188
Alw21I GWGCWC 1 cut(s) 29
AlwI GGATC 1 cut(s) 52
AoxI GGCC 4 cut(s) 102, 145, 164, 314
ApoI RAATTY 1 cut(s) 71
AspLEI GCGC 1 cut(s) 238
AspS9I GGNCC 4 cut(s) 18, 164, 250, 315
AsuHPI GGTGA 1 cut(s) 238
AvaII GGWCC 2 cut(s) 18, 250
Bbv12I GWGCWC 1 cut(s) 29
BccI CCATC 1 cut(s) 241
BceAI ACGGC 1 cut(s) 241
BfmI CTRYAG 1 cut(s) 77
BglI GCCNNNNNGGC 1 cut(s) 153
Bme18I GGWCC 2 cut(s) 18, 250
BmeRI GACNNNNNGTC 1 cut(s) 256
BmgT120I GGNCC 4 cut(s) 18, 164, 250, 315
BmiI GGNNCC 1 cut(s) 252
BpmI CTGGAG 1 cut(s) 210
BsaHI GRCGYC 1 cut(s) 305
BsaWI WCCGGW 1 cut(s) 50
Bsc4I CCNNNNNNNGG 1 cut(s) 36
Bse118I RCCGGY 2 cut(s) 137, 298
BseGI GGATG 1 cut(s) 70
BseLI CCNNNNNNNGG 1 cut(s) 36
BseMII CTCAG 2 cut(s) 168, 171
BseRI GAGGAG 6 cut(s) 198, 207, 210, 213, 216, 219
BshFI GGCC 4 cut(s) 104, 147, 166, 316
BsiHKAI GWGCWC 1 cut(s) 29
BsiSI CCGG 3 cut(s) 51, 138, 299
BslI CCNNNNNNNGG 1 cut(s) 36
BsnI GGCC 4 cut(s) 104, 147, 166, 316
Bsp1286I GDGCHC 1 cut(s) 29
Bsp143I GATC 2 cut(s) 44, 320
BspANI GGCC 4 cut(s) 104, 147, 166, 316
BspCNI CTCAG 2 cut(s) 169, 170
BspLI GGNNCC 1 cut(s) 252
BspPI GGATC 1 cut(s) 52
BsrBI CCGCTC 1 cut(s) 153
BsrFI RCCGGY 2 cut(s) 137, 298
BssAI RCCGGY 2 cut(s) 137, 298
BssMI GATC 2 cut(s) 44, 320
BssNI GRCGYC 1 cut(s) 305
Bst4CI ACNGT 1 cut(s) 226
BstACI GRCGYC 1 cut(s) 305
BstC8I GCNNGC 3 cut(s) 114, 168, 300
BstDEI CTNAG 2 cut(s) 157, 177
BstENI CCTNNNNNAGG 1 cut(s) 34
BstF5I GGATG 1 cut(s) 70
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 2 cut(s) 47, 323
BstMBI GATC 2 cut(s) 44, 320
BstMWI GCNNNNNNNGC 5 cut(s) 122, 128, 131, 134, 153
BstSFI CTRYAG 1 cut(s) 77
BsuRI GGCC 4 cut(s) 104, 147, 166, 316
BtsCI GGATG 1 cut(s) 70
Cac8I GCNNGC 3 cut(s) 114, 168, 300
CfoI GCGC 1 cut(s) 238
Cfr10I RCCGGY 2 cut(s) 137, 298
Cfr13I GGNCC 4 cut(s) 18, 164, 250, 315
CseI GACGC 1 cut(s) 294
DdeI CTNAG 2 cut(s) 157, 177
DpnI GATC 2 cut(s) 46, 322
DpnII GATC 2 cut(s) 44, 320
DriI GACNNNNNGTC 1 cut(s) 256
Eam1105I GACNNNNNGTC 1 cut(s) 256
EciI GGCGGA 1 cut(s) 20
Eco47I GGWCC 2 cut(s) 18, 250
Eco57I CTGAAG 1 cut(s) 16
EcoNI CCTNNNNNAGG 1 cut(s) 34
FauI CCCGC 1 cut(s) 261
FokI GGATG 1 cut(s) 77
GlaI GCGC 1 cut(s) 237
GsuI CTGGAG 1 cut(s) 210
HaeIII GGCC 4 cut(s) 104, 147, 166, 316
HapII CCGG 3 cut(s) 51, 138, 299
HgaI GACGC 1 cut(s) 294
HhaI GCGC 1 cut(s) 238
Hin1I GRCGYC 1 cut(s) 305
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HinfI GANTC 1 cut(s) 91
HpaII CCGG 3 cut(s) 51, 138, 299
HphI GGTGA 1 cut(s) 238
Hpy188I TCNGA 4 cut(s) 22, 160, 178, 222
Hpy188III TCNNGA 1 cut(s) 34
Hpy99I CGWCG 2 cut(s) 262, 310
HpyAV CCTTC 3 cut(s) 40, 223, 259
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4V TGCA 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 5 cut(s) 122, 128, 131, 134, 153
HpyF3I CTNAG 2 cut(s) 157, 177
Hsp92I GRCGYC 1 cut(s) 305
HspAI GCGC 1 cut(s) 236
KroI GCCGGC 1 cut(s) 298
KroNI GCCGGC 1 cut(s) 300
Kzo9I GATC 2 cut(s) 44, 320
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 9 cut(s) 19, 64, 151, 161, 174, 180, 258, 312, 331
MalI GATC 2 cut(s) 46, 322
MbiI CCGCTC 1 cut(s) 153
MboI GATC 2 cut(s) 44, 320
MhlI GDGCHC 1 cut(s) 29
MluCI AATT 2 cut(s) 8, 71
MroNI GCCGGC 1 cut(s) 298
MspI CCGG 3 cut(s) 51, 138, 299
MwoI GCNNNNNNNGC 5 cut(s) 122, 128, 131, 134, 153
NaeI GCCGGC 1 cut(s) 300
NdeII GATC 2 cut(s) 44, 320
NgoMIV GCCGGC 1 cut(s) 298
NlaIV GGNNCC 1 cut(s) 252
NmeAIII GCCGAG 1 cut(s) 130
PdiI GCCGGC 1 cut(s) 300
PfeI GAWTC 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 4 cut(s) 18, 164, 250, 315
Sau3AI GATC 2 cut(s) 44, 320
Sau96I GGNCC 4 cut(s) 18, 164, 250, 315
SduI GDGCHC 1 cut(s) 29
SetI ASST 6 cut(s) 20, 32, 190, 234, 270, 338
SfcI CTRYAG 1 cut(s) 77
SinI GGWCC 2 cut(s) 18, 250
Sse9I AATT 2 cut(s) 8, 71
TaaI ACNGT 1 cut(s) 226
TaqI TCGA 3 cut(s) 99, 308, 323
TasI AATT 2 cut(s) 8, 71
TfiI GAWTC 1 cut(s) 91
VpaK11BI GGWCC 2 cut(s) 18, 250
XagI CCTNNNNNAGG 1 cut(s) 34
XapI RAATTY 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.