Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005510.1

Orthogroup ID

OG0007633

Physical Location & Seq

Genomic Coordinates Forward (+)

7146 .. 7472

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005510.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atggcggaattgcagaggtcagagagcactttcaggaggcaaggatcttccggtttgatttgggacgacaaatttctacagagggctttgaatcaagtcgaggccgagaagcaagctgaagctgccgccgctgccggcggcggcggcggcggctccgacggtcctgcagctgacggcggagctccaggagggagggggtatcggacggtcaaggttgcgccgccgatgatggacccgccgtcgccgaaggtgtccgggtgttgtggagtattcggaaagccggcggcgtcgaagcggcccagatcgaaccagcggagatcgaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4666

Protein Analysis

108

Amino Acids

11.13

Weight (kDa)

10.02

Isoelectric Point (pI)

67.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15400 AT1G15400 AT1G15400 AT1G80180
fragaria_vesca	FvH4_1g03570
malus_domestica	MD02G1035000.v1.1
prunus_persica	Prupe.7G240000_v2.0.a1
pyrus_communis	pycom02g02860 pycom02g02880 pycom02g02900 pycom12g14640 pycom15g15740 pycom810g00020
rosa_chinensis	RchiOBHm_Chr2g0089091 RchiOBHm_Chr2g0162401
rosa_laevigata	RLG00000015990
rosa_multiflora	Rmu_sc0005510.1_g000003
rosa_roxburghii	Rroxscaffold_2G00152270
rosa_rugosa	Rorug01G0487400
rosa_samantha	Rh2AG042800 Rh2BG041300 Rh2CG042900 Rh2DG041900
rosa_wichuraiana	Rw2G003480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	52
AcsI	RAATTY	1 cut(s)	71
AcuI	CTGAAG	1 cut(s)	138
AcyI	GRCGYC	1 cut(s)	287
AgsI	TTSAA	1 cut(s)	91
AhdI	GACNNNNNGTC	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	4 cut(s)	116, 122, 170, 182
AluI	AGCT	4 cut(s)	116, 122, 170, 182
Alw21I	GWGCWC	2 cut(s)	29, 184
AlwI	GGATC	1 cut(s)	52
AoxI	GGCC	2 cut(s)	102, 296
ApeKI	GCWGC	3 cut(s)	122, 131, 167
ApoI	RAATTY	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	3 cut(s)	161, 232, 297
AsuC2I	CCSGG	1 cut(s)	256
AvaII	GGWCC	2 cut(s)	161, 232
BanII	GRGCYC	1 cut(s)	184
Bbv12I	GWGCWC	2 cut(s)	29, 184
BbvI	GCAGC	3 cut(s)	109, 118, 179
BccI	CCATC	1 cut(s)	223
BceAI	ACGGC	2 cut(s)	190, 223
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BciT130I	CCWGG	1 cut(s)	186
BcnI	CCSGG	1 cut(s)	256
BfmI	CTRYAG	2 cut(s)	77, 165
Bme1390I	CCNGG	2 cut(s)	186, 256
Bme18I	GGWCC	2 cut(s)	161, 232
BmeRI	GACNNNNNGTC	1 cut(s)	238
BmgT120I	GGNCC	3 cut(s)	161, 232, 297
BmiI	GGNNCC	2 cut(s)	154, 234
BmrFI	CCNGG	2 cut(s)	186, 256
BpmI	CTGGAG	1 cut(s)	168
BpuMI	CCSGG	1 cut(s)	256
BsaHI	GRCGYC	1 cut(s)	287
BsaWI	WCCGGW	1 cut(s)	50
Bse118I	RCCGGY	2 cut(s)	134, 280
BseBI	CCWGG	1 cut(s)	186
BseXI	GCAGC	3 cut(s)	109, 118, 179
BshFI	GGCC	2 cut(s)	104, 298
BsiHKAI	GWGCWC	2 cut(s)	29, 184
BsiSI	CCGG	4 cut(s)	51, 135, 255, 281
BslFI	GGGAC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	77
BsnI	GGCC	2 cut(s)	104, 298
Bsp1286I	GDGCHC	2 cut(s)	29, 184
Bsp143I	GATC	3 cut(s)	44, 302, 317
BspANI	GGCC	2 cut(s)	104, 298
BspLI	GGNNCC	2 cut(s)	154, 234
BspMAI	CTGCAG	1 cut(s)	169
BspPI	GGATC	1 cut(s)	52
BsrFI	RCCGGY	2 cut(s)	134, 280
BssAI	RCCGGY	2 cut(s)	134, 280
BssMI	GATC	3 cut(s)	44, 302, 317
BssNI	GRCGYC	1 cut(s)	287
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	161, 208
BstACI	GRCGYC	1 cut(s)	287
BstC8I	GCNNGC	3 cut(s)	114, 136, 282
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	3 cut(s)	47, 305, 320
BstMBI	GATC	3 cut(s)	44, 302, 317
BstMWI	GCNNNNNNNGC	6 cut(s)	122, 128, 131, 144, 147, 150
BstNI	CCWGG	1 cut(s)	186
BstSCI	CCNGG	2 cut(s)	184, 254
BstSFI	CTRYAG	2 cut(s)	77, 165
BstV1I	GCAGC	3 cut(s)	109, 118, 179
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BsuRI	GGCC	2 cut(s)	104, 298
Cac8I	GCNNGC	3 cut(s)	114, 136, 282
CfoI	GCGC	1 cut(s)	220
Cfr10I	RCCGGY	2 cut(s)	134, 280
Cfr13I	GGNCC	3 cut(s)	161, 232, 297
CseI	GACGC	1 cut(s)	276
CviJI	RGCY	9 cut(s)	86, 104, 116, 122, 153, 170, 182, 280, 298
CviKI_1	RGCY	9 cut(s)	86, 104, 116, 122, 153, 170, 182, 280, 298
DpnI	GATC	3 cut(s)	46, 304, 319
DpnII	GATC	3 cut(s)	44, 302, 317
DriI	GACNNNNNGTC	1 cut(s)	238
Eam1105I	GACNNNNNGTC	1 cut(s)	238
EciI	GGCGGA	2 cut(s)	20, 192
Ecl136II	GAGCTC	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	184
Eco47I	GGWCC	2 cut(s)	161, 232
Eco53kI	GAGCTC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	138
EcoICRI	GAGCTC	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	184
EcoT38I	GRGCYC	1 cut(s)	184
FaqI	GGGAC	1 cut(s)	77
FauI	CCCGC	1 cut(s)	243
FriOI	GRGCYC	1 cut(s)	184
GlaI	GCGC	1 cut(s)	219
GsuI	CTGGAG	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	104, 298
HapII	CCGG	4 cut(s)	51, 135, 255, 281
HgaI	GACGC	1 cut(s)	276
HhaI	GCGC	1 cut(s)	220
Hin1I	GRCGYC	1 cut(s)	287
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HinfI	GANTC	1 cut(s)	91
HpaII	CCGG	4 cut(s)	51, 135, 255, 281
Hpy188I	TCNGA	4 cut(s)	22, 157, 204, 275
Hpy188III	TCNNGA	1 cut(s)	34
Hpy99I	CGWCG	3 cut(s)	161, 244, 292
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	2 cut(s)	161, 208
HpyCH4V	TGCA	2 cut(s)	13, 167
HpyF10VI	GCNNNNNNNGC	6 cut(s)	122, 128, 131, 144, 147, 150
Hsp92I	GRCGYC	1 cut(s)	287
HspAI	GCGC	1 cut(s)	218
KroI	GCCGGC	2 cut(s)	134, 280
KroNI	GCCGGC	2 cut(s)	136, 282
Kzo9I	GATC	3 cut(s)	44, 302, 317
LmnI	GCTCC	3 cut(s)	158, 179, 187
Lsp1109I	GCAGC	3 cut(s)	109, 118, 179
MalI	GATC	3 cut(s)	46, 304, 319
MboI	GATC	3 cut(s)	44, 302, 317
MboII	GAAGA	1 cut(s)	39
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	2 cut(s)	29, 184
MluCI	AATT	2 cut(s)	8, 71
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	6 cut(s)	9, 30, 75, 94, 182, 186
MroNI	GCCGGC	2 cut(s)	134, 280
MspA1I	CMGCKG	3 cut(s)	131, 170, 313
MspI	CCGG	4 cut(s)	51, 135, 255, 281
MspR9I	CCNGG	2 cut(s)	186, 256
MvaI	CCWGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	6 cut(s)	122, 128, 131, 144, 147, 150
NaeI	GCCGGC	2 cut(s)	136, 282
NciI	CCSGG	1 cut(s)	256
NdeII	GATC	3 cut(s)	44, 302, 317
NgoMIV	GCCGGC	2 cut(s)	134, 280
NlaIV	GGNNCC	2 cut(s)	154, 234
NmeAIII	GCCGAG	1 cut(s)	130
PdiI	GCCGGC	2 cut(s)	136, 282
PfeI	GAWTC	1 cut(s)	91
PfoI	TCCNGGA	1 cut(s)	184
Psp124BI	GAGCTC	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	2 cut(s)	154, 234
PspPI	GGNCC	3 cut(s)	161, 232, 297
PstI	CTGCAG	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	170
SacI	GAGCTC	1 cut(s)	184
Sau3AI	GATC	3 cut(s)	44, 302, 317
Sau96I	GGNCC	3 cut(s)	161, 232, 297
ScrFI	CCNGG	2 cut(s)	186, 256
SduI	GDGCHC	2 cut(s)	29, 184
SetI	ASST	7 cut(s)	20, 118, 124, 172, 184, 216, 252
SfcI	CTRYAG	2 cut(s)	77, 165
SinI	GGWCC	2 cut(s)	161, 232
Sse9I	AATT	2 cut(s)	8, 71
SstI	GAGCTC	1 cut(s)	184
StyD4I	CCNGG	2 cut(s)	184, 254
TaaI	ACNGT	2 cut(s)	161, 208
TaqI	TCGA	4 cut(s)	99, 290, 305, 320
TasI	AATT	2 cut(s)	8, 71
TfiI	GAWTC	1 cut(s)	91
TseI	GCWGC	3 cut(s)	122, 131, 167
VpaK11BI	GGWCC	2 cut(s)	161, 232
XapI	RAATTY	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.