Rroxscaffold_2G00156170

ankyrin repeat protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
92611071 .. 92615439
4369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00156170.1

Sequence Viewer

Length: 1638 bp
ATGTCCACTACCTGTAGTTGCAGTACCAAGAAACTCAAATCTCGCGTTGCCACGATGGATTCCAACCCGGAGAAGAAGGAGAAATCTGGGCAAGAGAAAAAGCTCAGTAGACAAGATAGGATTGAATTGGGCCGCTTGTTTCAGAGCGCCGTGAGTTCCCATGATTGGGAACTTGCAGAGAGTCTGATCCTGTTAGCCGATCCACAAACTCTGAATGATGCTTTGTGCACTACTCTGGATTCAATTTGGTTTTTGACCACACAACAAGAGCTTTATGGGATAACGGGGTTGATTAAGAAAATCATTGTCAATGGTGCATATGACTTTACAAGAGCTGCCTTGAGGACTTCATTTCTTGCTTCATGTGTTTCTGCTTGTCAGAGCCGAACAATGAGTCTTGCAGATACAGTCACTCTAATGGCCCAAAGGCTGCATGAGCGTCTCCAGGAATGCAATGGAGATGAGGTCTTAAAGGCAGAAGCTGGTGCCAAGGTTCAAAAGTTCACTGAATGGGCTTTGAAATGTATAGGCTTCCATTCTCGTTGTCAGGGTAATAAAGATAGAGTTACTAACAGTTCAGGTGTTGAAATTCAACTCCAGTTATCTGCATTTAAGATATTCCTAGATATTGCTGGTAACCAGCTATCTGGGAAAGACTTCACGGAGGCCTTTGATGCTGCTTGCTTTCCCCTAACTCTCTTCTCTACTTCATTCTATCCTGGCTGGGCATCTGGGATATCAGCAACTGCAATTCAAGGTCTGCTGGGTATGCTGGTGGAGGGGGTGCAGACAATGTTAATCAGTGTTTCCTTGAGGCCTCTCGTTTTGGGAATTGCCCAACGGAACAGTTTGGATGTTGATGTTGACCTGGCGTTGGGTTTTGCGTCTCACTACTGCAAAATTGGTACTATGGAATGTCTTGTGGAAGAGGGTAATGCCATAGCTTTCTTGGGCCCTCTGATGAGAGCTGCAGAGAGGGGCTGTATGCAGGTTGTTGAGTGGTTTGTGAAAAGGGGTTGCCGAGACATGGAGCTGTGCCTTGCTCTGACAGCTGCAACATCTAGCAGCCAAGTTGATGTTGCTGCCTATCTCCTTCCTCATGTTCCCCATCATGTTCTTGCAGCACTAAGCATTGAAATTCTGAAGGCTGCTGGTGAACGAAGTGGTGGGTCTCTTGATGGTGTTGCATTTCTTCTCCATTCTGACTTCTTAGGAGACCCTGCAGCTACTTATGCTGTTGCTGACAATATTGCTCGGTCTGATGACGAGGGAGTAGCTCATGAGCTAAGGGTTTTTCTTAGAGAGCACTGGTCCGAGGAAGCCTTCTTGGAAGGAAGAAGACAAGAACAAGAACATTACCTGAACCTTGTGAGGATTTTAAAGTGGGGTGGATCTCCTATTTGCTTAAGAGATCTTCCATCCCCACTGAGGATAACAATTGCTTACCTGCCACTGTATAGGGAGTGTGTTAAGGCAGGTGGCTGTTTGTTGTCACAAAGGCTGAGAGGGCAGCTTATTGAAGCTGTGAGAGCGCTTGGTGGTGGGGTCTTAGAAGGGGTGAGCCAGTGCAAAGAGCTCTTGGCTTTTCTGGAGCACCATCTTCCTCCGTTTTTACTTGAACCGCCGAGCATTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

545

Amino Acids

59.67

Weight (kDa)

5.87

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1466
Acc36I ACCTGC 3 cut(s) 979, 1455, 1466
AccB1I GGYRCC 1 cut(s) 485
AccI GTMKAC 1 cut(s) 109
AccII CGCG 1 cut(s) 45
AciI CCGC 2 cut(s) 133, 1622
AclWI GGATC 3 cut(s) 181, 194, 1399
AcsI RAATTY 2 cut(s) 588, 1137
AcuI CTGAAG 1 cut(s) 1163
AfaI GTAC 2 cut(s) 25, 907
AfeI AGCGCT 1 cut(s) 1533
AfiI CCNNNNNNNGG 5 cut(s) 165, 166, 874, 1027, 1428
AflII CTTAAG 1 cut(s) 1405
AjnI CCWGG 3 cut(s) 444, 718, 867
Alw21I GWGCWC 4 cut(s) 230, 1308, 1578, 1596
Alw26I GTCTC 5 cut(s) 446, 891, 1017, 1176, 1209
Alw44I GTGCAC 1 cut(s) 226
AlwI GGATC 3 cut(s) 181, 194, 1399
AlwNI CAGNNNCTG 2 cut(s) 482, 746
Aor51HI AGCGCT 1 cut(s) 1533
AoxI GGCC 5 cut(s) 130, 420, 666, 815, 952
ApaI GGGCCC 1 cut(s) 956
ApaLI GTGCAC 1 cut(s) 226
ApoI RAATTY 2 cut(s) 588, 1137
ArsI GACNNNNNNTTYG 2 cut(s) 379, 411
Asp700I GAANNNNTTC 1 cut(s) 656
AspLEI GCGC 2 cut(s) 149, 1534
AspS9I GGNCC 5 cut(s) 130, 421, 952, 953, 1311
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 2 cut(s) 1166, 1570
AvaII GGWCC 1 cut(s) 1311
BaeGI GKGCMC 2 cut(s) 230, 956
BanI GGYRCC 1 cut(s) 485
BanII GRGCYC 2 cut(s) 956, 1578
BbsI GAAGAC 1 cut(s) 1345
Bbv12I GWGCWC 4 cut(s) 230, 1308, 1578, 1596
BccI CCATC 5 cut(s) 49, 1116, 1172, 1426, 1605
BceAI ACGGC 1 cut(s) 134
BciT130I CCWGG 3 cut(s) 446, 720, 869
BcnI CCSGG 1 cut(s) 68
BcoDI GTCTC 5 cut(s) 446, 891, 1017, 1176, 1209
BfaI CTAG 2 cut(s) 623, 1062
BfmI CTRYAG 3 cut(s) 13, 969, 1221
BfoI RGCGCY 2 cut(s) 150, 1535
BfrI CTTAAG 1 cut(s) 1405
BfuAI ACCTGC 3 cut(s) 979, 1455, 1466
BglII AGATCT 1 cut(s) 1411
Bme1390I CCNGG 4 cut(s) 68, 446, 720, 869
Bme18I GGWCC 1 cut(s) 1311
BmgT120I GGNCC 5 cut(s) 130, 421, 952, 953, 1311
BmiI GGNNCC 2 cut(s) 487, 954
BmrFI CCNGG 4 cut(s) 68, 446, 720, 869
BmsI GCATC 3 cut(s) 208, 664, 737
BpiI GAAGAC 1 cut(s) 1345
BpmI CTGGAG 3 cut(s) 428, 581, 1610
Bpu10I CCTNAGC 1 cut(s) 1286
BpuEI CTTGAG 2 cut(s) 361, 832
BpuMI CCSGG 1 cut(s) 68
BsaI GGTCTC 2 cut(s) 1176, 1209
BsaJI CCNNGG 2 cut(s) 489, 1314
BsaXI ACNNNNNCTCC 2 cut(s) 450, 480
Bsc4I CCNNNNNNNGG 5 cut(s) 165, 166, 874, 1027, 1428
Bse1I ACTGG 3 cut(s) 598, 1313, 1564
Bse3DI GCAATG 1 cut(s) 460
BseBI CCWGG 3 cut(s) 446, 720, 869
BseDI CCNNGG 2 cut(s) 489, 1314
BseGI GGATG 2 cut(s) 859, 1418
BseLI CCNNNNNNNGG 5 cut(s) 165, 166, 874, 1027, 1428
BseMI GCAATG 1 cut(s) 460
BseMII CTCAG 3 cut(s) 118, 1418, 1493
BseNI ACTGG 3 cut(s) 598, 1313, 1564
BseSI GKGCMC 2 cut(s) 230, 956
BseYI CCCAGC 2 cut(s) 723, 763
BsgI GTGCAG 1 cut(s) 806
Bsh1236I CGCG 1 cut(s) 45
BshFI GGCC 5 cut(s) 132, 422, 668, 817, 954
BshNI GGYRCC 1 cut(s) 485
BsiHKAI GWGCWC 4 cut(s) 230, 1308, 1578, 1596
BsiSI CCGG 1 cut(s) 68
BslI CCNNNNNNNGG 5 cut(s) 165, 166, 874, 1027, 1428
BsmAI GTCTC 5 cut(s) 446, 891, 1017, 1176, 1209
BsmBI CGTCTC 2 cut(s) 446, 891
BsmI GAATGC 1 cut(s) 455
BsnI GGCC 5 cut(s) 132, 422, 668, 817, 954
Bso31I GGTCTC 2 cut(s) 1176, 1209
Bsp120I GGGCCC 1 cut(s) 952
Bsp1286I GDGCHC 5 cut(s) 230, 956, 1308, 1578, 1596
Bsp143I GATC 4 cut(s) 186, 199, 1391, 1411
BspACI CCGC 2 cut(s) 133, 1622
BspANI GGCC 5 cut(s) 132, 422, 668, 817, 954
BspCNI CTCAG 3 cut(s) 117, 1419, 1494
BspFNI CGCG 1 cut(s) 45
BspHI TCATGA 1 cut(s) 1279
BspLI GGNNCC 2 cut(s) 487, 954
BspMAI CTGCAG 2 cut(s) 973, 1225
BspMI ACCTGC 3 cut(s) 979, 1455, 1466
BspPI GGATC 3 cut(s) 181, 194, 1399
BspT107I GGYRCC 1 cut(s) 485
BspTI CTTAAG 1 cut(s) 1405
BspTNI GGTCTC 2 cut(s) 1176, 1209
BsrDI GCAATG 1 cut(s) 460
BsrI ACTGG 3 cut(s) 598, 1313, 1564
BssECI CCNNGG 2 cut(s) 489, 1314
BssMI GATC 4 cut(s) 186, 199, 1391, 1411
BssT1I CCWWGG 1 cut(s) 489
Bst2UI CCWGG 3 cut(s) 446, 720, 869
Bst4CI ACNGT 4 cut(s) 409, 575, 848, 1455
Bst6I CTCTTC 2 cut(s) 704, 921
BstAFI CTTAAG 1 cut(s) 1405
BstC8I GCNNGC 1 cut(s) 682
BstDEI CTNAG 8 cut(s) 104, 1127, 1210, 1286, 1298, 1427, 1502, 1549
BstEII GGTNACC 1 cut(s) 635
BstF5I GGATG 2 cut(s) 859, 1418
BstFNI CGCG 1 cut(s) 45
BstH2I RGCGCY 2 cut(s) 150, 1535
BstHHI GCGC 2 cut(s) 149, 1534
BstKTI GATC 4 cut(s) 189, 202, 1394, 1414
BstMAI GTCTC 5 cut(s) 446, 891, 1017, 1176, 1209
BstMBI GATC 4 cut(s) 186, 199, 1391, 1411
BstMWI GCNNNNNNNGC 7 cut(s) 436, 674, 769, 1049, 1232, 1507, 1529
BstNI CCWGG 3 cut(s) 446, 720, 869
BstPI GGTNACC 1 cut(s) 635
BstSCI CCNGG 4 cut(s) 66, 444, 718, 867
BstSFI CTRYAG 3 cut(s) 13, 969, 1221
BstSLI GKGCMC 2 cut(s) 230, 956
BstUI CGCG 1 cut(s) 45
BstV2I GAAGAC 1 cut(s) 1345
BstX2I RGATCY 2 cut(s) 1391, 1411
BstXI CCANNNNNNTGG 1 cut(s) 647
BstYI RGATCY 2 cut(s) 1391, 1411
BsuRI GGCC 5 cut(s) 132, 422, 668, 817, 954
BtsCI GGATG 2 cut(s) 859, 1418
BtsIMutI CAGTG 6 cut(s) 504, 808, 1306, 1424, 1451, 1571
BveI ACCTGC 3 cut(s) 979, 1455, 1466
Cac8I GCNNGC 1 cut(s) 682
CaiI CAGNNNCTG 2 cut(s) 482, 746
CciI TCATGA 1 cut(s) 1279
CfoI GCGC 2 cut(s) 149, 1534
Cfr13I GGNCC 5 cut(s) 130, 421, 952, 953, 1311
CseI GACGC 2 cut(s) 428, 873
Csp6I GTAC 2 cut(s) 24, 906
CviAII CATG 7 cut(s) 161, 363, 434, 1027, 1100, 1112, 1280
CviQI GTAC 2 cut(s) 24, 906
DdeI CTNAG 8 cut(s) 104, 1127, 1210, 1286, 1298, 1427, 1502, 1549
DpnI GATC 4 cut(s) 188, 201, 1393, 1413
DpnII GATC 4 cut(s) 186, 199, 1391, 1411
DraI TTTAAA 1 cut(s) 1380
Eam1104I CTCTTC 2 cut(s) 704, 921
EarI CTCTTC 2 cut(s) 704, 921
Ecl136II GAGCTC 1 cut(s) 1576
Eco130I CCWWGG 1 cut(s) 489
Eco147I AGGCCT 2 cut(s) 668, 817
Eco24I GRGCYC 2 cut(s) 956, 1578
Eco31I GGTCTC 2 cut(s) 1176, 1209
Eco32I GATATC 1 cut(s) 738
Eco47I GGWCC 1 cut(s) 1311
Eco47III AGCGCT 1 cut(s) 1533
Eco53kI GAGCTC 1 cut(s) 1576
Eco57I CTGAAG 1 cut(s) 1163
Eco91I GGTNACC 1 cut(s) 635
EcoICRI GAGCTC 1 cut(s) 1576
EcoO109I RGGNCCY 1 cut(s) 953
EcoO65I GGTNACC 1 cut(s) 635
EcoRII CCWGG 3 cut(s) 444, 718, 867
EcoRV GATATC 1 cut(s) 738
EcoT14I CCWWGG 1 cut(s) 489
EcoT38I GRGCYC 2 cut(s) 956, 1578
ErhI CCWWGG 1 cut(s) 489
Esp3I CGTCTC 2 cut(s) 446, 891
FaeI CATG 7 cut(s) 164, 366, 437, 1030, 1103, 1115, 1283
FatI CATG 7 cut(s) 160, 362, 433, 1026, 1099, 1111, 1279
FauNDI CATATG 1 cut(s) 319
FblI GTMKAC 1 cut(s) 109
FokI GGATG 2 cut(s) 866, 1405
FriOI GRGCYC 2 cut(s) 956, 1578
FspBI CTAG 2 cut(s) 623, 1062
GlaI GCGC 2 cut(s) 148, 1533
GsaI CCCAGC 2 cut(s) 727, 767
GsuI CTGGAG 3 cut(s) 428, 581, 1610
HaeII RGCGCY 2 cut(s) 150, 1535
HaeIII GGCC 5 cut(s) 132, 422, 668, 817, 954
HapII CCGG 1 cut(s) 68
HgaI GACGC 2 cut(s) 428, 873
HhaI GCGC 2 cut(s) 149, 1534
Hin1II CATG 7 cut(s) 164, 366, 437, 1030, 1103, 1115, 1283
Hin6I GCGC 2 cut(s) 147, 1532
HinP1I GCGC 2 cut(s) 147, 1532
HincII GTYRAC 1 cut(s) 865
HindII GTYRAC 1 cut(s) 865
HinfI GANTC 4 cut(s) 59, 181, 239, 394
HpaII CCGG 1 cut(s) 68
HphI GGTGA 2 cut(s) 1166, 1570
Hpy166II GTNNAC 6 cut(s) 6, 110, 228, 504, 865, 1157
Hpy188III TCNNGA 4 cut(s) 236, 1175, 1280, 1589
Hpy8I GTNNAC 6 cut(s) 6, 110, 228, 504, 865, 1157
HpyAV CCTTC 6 cut(s) 70, 1103, 1138, 1325, 1333, 1547
HpyCH4III ACNGT 4 cut(s) 409, 575, 848, 1455
HpyF10VI GCNNNNNNNGC 7 cut(s) 436, 674, 769, 1049, 1232, 1507, 1529
HpyF3I CTNAG 8 cut(s) 104, 1127, 1210, 1286, 1298, 1427, 1502, 1549
Hsp92II CATG 7 cut(s) 164, 366, 437, 1030, 1103, 1115, 1283
HspAI GCGC 2 cut(s) 147, 1532
Kzo9I GATC 4 cut(s) 186, 199, 1391, 1411
LmnI GCTCC 2 cut(s) 1030, 1591
LweI GCATC 3 cut(s) 208, 664, 737
MaeI CTAG 2 cut(s) 623, 1062
MaeIII GTNAC 4 cut(s) 409, 565, 635, 1491
MalI GATC 4 cut(s) 188, 201, 1393, 1413
MboI GATC 4 cut(s) 186, 199, 1391, 1411
MboII GAAGA 8 cut(s) 85, 691, 938, 1184, 1347, 1350, 1406, 1592
MfeI CAATTG 1 cut(s) 1437
MflI RGATCY 2 cut(s) 1391, 1411
MhlI GDGCHC 5 cut(s) 230, 956, 1308, 1578, 1596
MluCI AATT 8 cut(s) 125, 243, 588, 750, 831, 900, 1137, 1437
MlyI GAGTC 2 cut(s) 190, 403
MmeI TCCRAC 1 cut(s) 87
MroXI GAANNNNTTC 1 cut(s) 656
MseI TTAA 7 cut(s) 294, 470, 612, 797, 1379, 1406, 1470
MslI CAYNNNNRTG 1 cut(s) 416
MspA1I CMGCKG 1 cut(s) 1052
MspCI CTTAAG 1 cut(s) 1405
MspI CCGG 1 cut(s) 68
MspR9I CCNGG 4 cut(s) 68, 446, 720, 869
MunI CAATTG 1 cut(s) 1437
Mva1269I GAATGC 1 cut(s) 455
MvaI CCWGG 3 cut(s) 446, 720, 869
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 7 cut(s) 436, 674, 769, 1049, 1232, 1507, 1529
NciI CCSGG 1 cut(s) 68
NdeI CATATG 1 cut(s) 319
NdeII GATC 4 cut(s) 186, 199, 1391, 1411
NlaIII CATG 7 cut(s) 164, 366, 437, 1030, 1103, 1115, 1283
NlaIV GGNNCC 2 cut(s) 487, 954
NmeAIII GCCGAG 1 cut(s) 1046
NmuCI GTSAC 2 cut(s) 409, 1491
PagI TCATGA 1 cut(s) 1279
PaqCI CACCTGC 1 cut(s) 1466
PceI AGGCCT 2 cut(s) 668, 817
PctI GAATGC 1 cut(s) 455
PdmI GAANNNNTTC 1 cut(s) 656
PfeI GAWTC 2 cut(s) 59, 239
PfoI TCCNGGA 1 cut(s) 444
PleI GAGTC 2 cut(s) 189, 402
PpsI GAGTC 2 cut(s) 189, 402
Psp124BI GAGCTC 1 cut(s) 1578
Psp6I CCWGG 3 cut(s) 444, 718, 867
PspEI GGTNACC 1 cut(s) 635
PspFI CCCAGC 2 cut(s) 723, 763
PspGI CCWGG 3 cut(s) 444, 718, 867
PspN4I GGNNCC 2 cut(s) 487, 954
PspOMI GGGCCC 1 cut(s) 952
PspPI GGNCC 5 cut(s) 130, 421, 952, 953, 1311
PstI CTGCAG 2 cut(s) 973, 1225
PstNI CAGNNNCTG 2 cut(s) 482, 746
PsuI RGATCY 2 cut(s) 1391, 1411
PvuII CAGCTG 1 cut(s) 1052
RsaI GTAC 2 cut(s) 25, 907
RsaNI GTAC 2 cut(s) 24, 906
RseI CAYNNNNRTG 1 cut(s) 416
SacI GAGCTC 1 cut(s) 1578
SaqAI TTAA 7 cut(s) 294, 470, 612, 797, 1379, 1406, 1470
Sau3AI GATC 4 cut(s) 186, 199, 1391, 1411
Sau96I GGNCC 5 cut(s) 130, 421, 952, 953, 1311
SchI GAGTC 2 cut(s) 190, 403
ScrFI CCNGG 4 cut(s) 68, 446, 720, 869
SduI GDGCHC 5 cut(s) 230, 956, 1308, 1578, 1596
SfaNI GCATC 3 cut(s) 208, 664, 737
SfcI CTRYAG 3 cut(s) 13, 969, 1221
SinI GGWCC 1 cut(s) 1311
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 3 cut(s) 340, 811, 1405
SmoI CTYRAG 3 cut(s) 340, 811, 1405
Sse9I AATT 8 cut(s) 125, 243, 588, 750, 831, 900, 1137, 1437
SseBI AGGCCT 2 cut(s) 668, 817
SsiI CCGC 2 cut(s) 133, 1622
SspI AATATT 1 cut(s) 1249
SspMI CTAG 2 cut(s) 623, 1062
SstI GAGCTC 1 cut(s) 1578
StuI AGGCCT 2 cut(s) 668, 817
StyD4I CCNGG 4 cut(s) 66, 444, 718, 867
StyI CCWWGG 1 cut(s) 489
TaaI ACNGT 4 cut(s) 409, 575, 848, 1455
TaqII GACCGA 1 cut(s) 1245
TasI AATT 8 cut(s) 125, 243, 588, 750, 831, 900, 1137, 1437
TauI GCSGC 1 cut(s) 135
TfiI GAWTC 2 cut(s) 59, 239
Tru1I TTAA 7 cut(s) 294, 470, 612, 797, 1379, 1406, 1470
Tru9I TTAA 7 cut(s) 294, 470, 612, 797, 1379, 1406, 1470
TscAI CASTG 6 cut(s) 511, 808, 1313, 1431, 1458, 1571
TseFI GTSAC 2 cut(s) 409, 1491
Tsp45I GTSAC 2 cut(s) 409, 1491
TspDTI ATGAA 3 cut(s) 339, 351, 699
TspGWI ACGGA 3 cut(s) 677, 856, 1596
TspRI CASTG 6 cut(s) 511, 808, 1313, 1431, 1458, 1571
Vha464I CTTAAG 1 cut(s) 1405
VneI GTGCAC 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 1311
XapI RAATTY 2 cut(s) 588, 1137
XcmI CCANNNNNNNNNTGG 2 cut(s) 452, 946
XmiI GTMKAC 1 cut(s) 109
XmnI GAANNNNTTC 1 cut(s) 656
XspI CTAG 2 cut(s) 623, 1062
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.