Rorug01G0452800

ankyrin repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004727
Physical Location & Seq
Forward (+)
54770835 .. 54772463
1629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0452800.1

Sequence Viewer

Length: 1440 bp
ATGGATGCTATTCAGGCTATAGTTTTATACCCATCACCACCTATAGGCCACTTGGTTTCTATGGTAGAGTTAGGCAAACTCATACTTACTCACCATCCTTCACTAAGCATCCACATAATCCTTGCCACCCCACCTTACAGAGCCGATGATACCGCCCCATACATTGCCTCTGTGTCTGCCACTACATCCTCCATCATCTTTCACCGCCTCCCCACTGTCTCTCTCCCTCCCTCTATCACTTCCGGCACACGCAACCATGAAACCCTAACCTTTGAAGTTCTCCGCCTCAACAACCCTCACGTCCACCAAGCCCTCCTTTCCATCTCCAACAGCTTCACTGTCCAAGCTTTTATCATGGACTTCTTCTGCGGTCTCGGACTTTCTGTTGCTACTGATCTGAACATCCCAGGTTACTTTTACTTAACATCTGGTGCAGGGTTCCTAGCCTCCTTCCTTTACCTTCCTACTATTCACAAAAACACTGACAAGAGCCTTAAAGACCTTGACACCCTTATCTGTATTCCAGGAGTACCACCAGTACATTCCTTAGATATGCCGAAACCATTTCTTGAACGCAATGACAAGGCTTATGAATGCTTCCTAGATAACTCAACCCACTCGACCAGATCAGCTGGGATTATCATAAACACTTTTGAATCACTTGAACCTAGAACTATCAGAGCACTATCAGATGGACTATGCTTGCCTGATGATATTACCATGCCGCCCATCTACTGCATAGGACCGTTAATCATTTCTCAAAGAGGTGGAGGCCGGGCTGATGTGCCTGAGTGTTTGACGTGGCTGGATTCACAGCCAAGTGGAAGTGTGGTCTTCCTTTGTTTTGGAAGCTTAGGATTGTTTACAAAGGAGCAGTTGGAGGAGATAGCTGTGGGGTTAGAGAGGAGTGGCCAAAGGTTCTTGTGGGTTGTTCGTAATCCACCTTCTCATAATCAAAGCGTGGCTATTGCAGGCCAAGTGGATCCGGATTTGGATTATTTGCTTCCAGATGGTTTTTTGGATAGAACCAAGGATAGGGGTCTTGTGGTGAAGTCATGGGCGCCACAAGTAGAAGTTCTGAATCATGATTCAGTAGGCGGATTTGTGTGTCACTGTGGGTGGAACTCAATTTTGGAGGCGGTGTGTGCTGGGGTGCCAATGTTGGCTTGGCCACTCTATGCAGAGCAGAGATTAAATAGGGTTGTTTTGGTTGAGGAAATAAAGATTGCTCTGCCGGTGAACGAATCAAAAAGCGGGTTTGTGAGTGCAAATGAGGTTGAGAATCGAGTTAGAGAGTTGATGAACTCGGAGGAAGGAGAGTCAATCAGGAAGAAGATTGAGGTTCTGAGAAGTGAAGCAAATGCTGCGGTGAGTGAAGGCGGAACATCTAATGTCGCATTAGTTAAATTGGTTGAATCATGGAATCAAGGCATGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

479

Amino Acids

52.39

Weight (kDa)

5.32

Isoelectric Point (pI)

42.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 267 - 437 3.3e-23 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1060, 1153
AccIII TCCGGA 1 cut(s) 985
AclWI GGATC 2 cut(s) 977, 990
AcoI YGGCCR 2 cut(s) 910, 1169
AcyI GRCGYC 1 cut(s) 1061
AfaI GTAC 2 cut(s) 531, 540
AfiI CCNNNNNNNGG 2 cut(s) 44, 1035
AgsI TTSAA 5 cut(s) 275, 572, 656, 665, 1415
AjiI CACGTC 2 cut(s) 301, 801
AjnI CCWGG 2 cut(s) 406, 523
AjuI GAANNNNNNNTTGG 2 cut(s) 1115, 1147
AluBI AGCT 5 cut(s) 333, 347, 632, 852, 890
AluI AGCT 5 cut(s) 333, 347, 632, 852, 890
Alw21I GWGCWC 1 cut(s) 685
Alw26I GTCTC 2 cut(s) 223, 377
AlwI GGATC 2 cut(s) 977, 990
Aor13HI TCCGGA 1 cut(s) 985
AoxI GGCC 5 cut(s) 46, 772, 910, 973, 1169
ApeKI GCWGC 1 cut(s) 1364
AspLEI GCGC 1 cut(s) 1063
AspS9I GGNCC 1 cut(s) 743
AsuC2I CCSGG 1 cut(s) 776
AsuHPI GGTGA 6 cut(s) 27, 83, 194, 1060, 1249, 1381
AvaII GGWCC 1 cut(s) 743
BalI TGGCCA 2 cut(s) 912, 1171
BamHI GGATCC 1 cut(s) 982
BanI GGYRCC 2 cut(s) 1060, 1153
BarI GAAGNNNNNNTAC 2 cut(s) 928, 960
BbsI GAAGAC 1 cut(s) 826
Bbv12I GWGCWC 1 cut(s) 685
BbvI GCAGC 1 cut(s) 1351
BccI CCATC 7 cut(s) 40, 102, 200, 329, 686, 737, 1004
BciT130I CCWGG 2 cut(s) 408, 525
BcnI CCSGG 1 cut(s) 776
BcoDI GTCTC 2 cut(s) 223, 377
BfaI CTAG 4 cut(s) 443, 602, 669, 1438
BfmI CTRYAG 2 cut(s) 18, 42
BfoI RGCGCY 1 cut(s) 1064
BisI GCNGC 2 cut(s) 725, 1365
BlsI GCNGC 2 cut(s) 726, 1366
Bme1390I CCNGG 3 cut(s) 408, 525, 776
Bme18I GGWCC 1 cut(s) 743
BmgBI CACGTC 2 cut(s) 301, 801
BmgT120I GGNCC 1 cut(s) 743
BmiI GGNNCC 4 cut(s) 440, 984, 1062, 1155
BmrFI CCNGG 3 cut(s) 408, 525, 776
BmsI GCATC 1 cut(s) 117
BpiI GAAGAC 1 cut(s) 826
Bpu10I CCTNAGC 1 cut(s) 853
BpuMI CCSGG 1 cut(s) 776
BsaHI GRCGYC 1 cut(s) 1061
BsaI GGTCTC 1 cut(s) 377
BsaJI CCNNGG 2 cut(s) 406, 1029
BsaWI WCCGGW 1 cut(s) 985
BsaXI ACNNNNNCTCC 2 cut(s) 1127, 1157
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 1035
Bse118I RCCGGY 1 cut(s) 1234
Bse1I ACTGG 1 cut(s) 536
Bse3DI GCAATG 2 cut(s) 162, 583
BseAI TCCGGA 1 cut(s) 985
BseBI CCWGG 2 cut(s) 408, 525
BseDI CCNNGG 2 cut(s) 406, 1029
BseGI GGATG 5 cut(s) 10, 94, 108, 185, 402
BseLI CCNNNNNNNGG 2 cut(s) 44, 1035
BseMI GCAATG 2 cut(s) 162, 583
BseMII CTCAG 2 cut(s) 780, 1337
BseNI ACTGG 1 cut(s) 536
BseRI GAGGAG 2 cut(s) 896, 919
BseXI GCAGC 1 cut(s) 1351
BseYI CCCAGC 2 cut(s) 632, 1148
BsgI GTGCAG 1 cut(s) 453
BshFI GGCC 5 cut(s) 48, 774, 912, 975, 1171
BshNI GGYRCC 2 cut(s) 1060, 1153
BsiHKAI GWGCWC 1 cut(s) 685
BsiSI CCGG 4 cut(s) 243, 775, 986, 1235
BslI CCNNNNNNNGG 2 cut(s) 44, 1035
BsmAI GTCTC 2 cut(s) 223, 377
BsmI GAATGC 1 cut(s) 599
BsnI GGCC 5 cut(s) 48, 774, 912, 975, 1171
Bso31I GGTCTC 1 cut(s) 377
Bsp1286I GDGCHC 1 cut(s) 685
Bsp13I TCCGGA 1 cut(s) 985
Bsp143I GATC 3 cut(s) 394, 626, 982
BspANI GGCC 5 cut(s) 48, 774, 912, 975, 1171
BspCNI CTCAG 2 cut(s) 781, 1338
BspEI TCCGGA 1 cut(s) 985
BspHI TCATGA 1 cut(s) 1084
BspLI GGNNCC 4 cut(s) 440, 984, 1062, 1155
BspPI GGATC 2 cut(s) 977, 990
BspT107I GGYRCC 2 cut(s) 1060, 1153
BspTNI GGTCTC 1 cut(s) 377
BsrDI GCAATG 2 cut(s) 162, 583
BsrFI RCCGGY 1 cut(s) 1234
BsrI ACTGG 1 cut(s) 536
BssAI RCCGGY 1 cut(s) 1234
BssECI CCNNGG 2 cut(s) 406, 1029
BssMI GATC 3 cut(s) 394, 626, 982
BssNI GRCGYC 1 cut(s) 1061
BssT1I CCWWGG 1 cut(s) 1029
Bst2UI CCWGG 2 cut(s) 408, 525
Bst4CI ACNGT 4 cut(s) 217, 340, 747, 1115
BstACI GRCGYC 1 cut(s) 1061
BstAPI GCANNNNNTGC 1 cut(s) 1364
BstC8I GCNNGC 2 cut(s) 704, 973
BstDEI CTNAG 5 cut(s) 104, 547, 789, 853, 1346
BstF5I GGATG 5 cut(s) 10, 94, 108, 185, 402
BstH2I RGCGCY 1 cut(s) 1064
BstHHI GCGC 1 cut(s) 1063
BstKTI GATC 3 cut(s) 397, 629, 985
BstMAI GTCTC 2 cut(s) 223, 377
BstMBI GATC 3 cut(s) 394, 626, 982
BstMWI GCNNNNNNNGC 3 cut(s) 14, 1145, 1364
BstNI CCWGG 2 cut(s) 408, 525
BstSCI CCNGG 3 cut(s) 406, 523, 774
BstSFI CTRYAG 2 cut(s) 18, 42
BstV1I GCAGC 1 cut(s) 1351
BstV2I GAAGAC 1 cut(s) 826
BstX2I RGATCY 1 cut(s) 982
BstYI RGATCY 1 cut(s) 982
BsuRI GGCC 5 cut(s) 48, 774, 912, 975, 1171
BtrI CACGTC 2 cut(s) 301, 801
BtsCI GGATG 5 cut(s) 10, 94, 108, 185, 402
BtsIMutI CAGTG 4 cut(s) 213, 336, 480, 1111
Cac8I GCNNGC 2 cut(s) 704, 973
CciI TCATGA 1 cut(s) 1084
CfoI GCGC 1 cut(s) 1063
Cfr10I RCCGGY 1 cut(s) 1234
Cfr13I GGNCC 1 cut(s) 743
Csp6I GTAC 2 cut(s) 530, 539
CviAII CATG 7 cut(s) 257, 355, 721, 1056, 1085, 1419, 1432
CviQI GTAC 2 cut(s) 530, 539
DdeI CTNAG 5 cut(s) 104, 547, 789, 853, 1346
DinI GGCGCC 1 cut(s) 1062
DpnI GATC 3 cut(s) 396, 628, 984
DpnII GATC 3 cut(s) 394, 626, 982
EaeI YGGCCR 2 cut(s) 910, 1169
EciI GGCGGA 3 cut(s) 272, 1113, 1395
Eco130I CCWWGG 1 cut(s) 1029
Eco31I GGTCTC 1 cut(s) 377
Eco47I GGWCC 1 cut(s) 743
EcoRII CCWGG 2 cut(s) 406, 523
EcoT14I CCWWGG 1 cut(s) 1029
EgeI GGCGCC 1 cut(s) 1062
EheI GGCGCC 1 cut(s) 1062
ErhI CCWWGG 1 cut(s) 1029
FaeI CATG 7 cut(s) 260, 358, 724, 1059, 1088, 1422, 1435
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FatI CATG 7 cut(s) 256, 354, 720, 1055, 1084, 1418, 1431
FauI CCCGC 1 cut(s) 1247
Fnu4HI GCNGC 2 cut(s) 725, 1365
FokI GGATG 5 cut(s) 17, 81, 95, 172, 389
Fsp4HI GCNGC 2 cut(s) 725, 1365
FspBI CTAG 4 cut(s) 443, 602, 669, 1438
GlaI GCGC 1 cut(s) 1062
GluI GCNGC 2 cut(s) 725, 1365
GsaI CCCAGC 2 cut(s) 636, 1152
HaeII RGCGCY 1 cut(s) 1064
HaeIII GGCC 5 cut(s) 48, 774, 912, 975, 1171
HapII CCGG 4 cut(s) 243, 775, 986, 1235
HhaI GCGC 1 cut(s) 1063
Hin1I GRCGYC 1 cut(s) 1061
Hin1II CATG 7 cut(s) 260, 358, 724, 1059, 1088, 1422, 1435
Hin6I GCGC 1 cut(s) 1061
HinP1I GCGC 1 cut(s) 1061
HindIII AAGCTT 2 cut(s) 345, 850
HinfI GANTC 9 cut(s) 656, 809, 1081, 1088, 1244, 1282, 1319, 1415, 1423
HpaII CCGG 4 cut(s) 243, 775, 986, 1235
HphI GGTGA 6 cut(s) 27, 83, 194, 1060, 1249, 1381
Hpy166II GTNNAC 3 cut(s) 304, 864, 1240
Hpy188I TCNGA 7 cut(s) 377, 399, 680, 691, 1080, 1309, 1347
Hpy188III TCNNGA 5 cut(s) 569, 986, 1007, 1085, 1327
Hpy8I GTNNAC 3 cut(s) 304, 864, 1240
HpyAV CCTTC 6 cut(s) 108, 460, 470, 954, 1307, 1370
HpyCH4III ACNGT 4 cut(s) 217, 340, 747, 1115
HpyCH4IV ACGT 2 cut(s) 300, 800
HpyCH4V TGCA 5 cut(s) 434, 738, 971, 1181, 1268
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 1145, 1364
HpyF3I CTNAG 5 cut(s) 104, 547, 789, 853, 1346
HpySE526I ACGT 2 cut(s) 300, 800
Hsp92I GRCGYC 1 cut(s) 1061
Hsp92II CATG 7 cut(s) 260, 358, 724, 1059, 1088, 1422, 1435
HspAI GCGC 1 cut(s) 1061
KasI GGCGCC 1 cut(s) 1060
Kpn2I TCCGGA 1 cut(s) 985
Kzo9I GATC 3 cut(s) 394, 626, 982
LmnI GCTCC 1 cut(s) 871
Lsp1109I GCAGC 1 cut(s) 1351
LweI GCATC 1 cut(s) 117
MaeI CTAG 4 cut(s) 443, 602, 669, 1438
MaeII ACGT 2 cut(s) 300, 800
MaeIII GTNAC 2 cut(s) 410, 1109
MalI GATC 3 cut(s) 396, 628, 984
MboI GATC 3 cut(s) 394, 626, 982
MboII GAAGA 4 cut(s) 355, 826, 1342, 1345
MflI RGATCY 1 cut(s) 982
MhlI GDGCHC 1 cut(s) 685
MlsI TGGCCA 2 cut(s) 912, 1171
MluCI AATT 2 cut(s) 1128, 1406
MluNI TGGCCA 2 cut(s) 912, 1171
Mly113I GGCGCC 1 cut(s) 1061
MlyI GAGTC 1 cut(s) 1328
MmeI TCCRAC 2 cut(s) 351, 858
Mox20I TGGCCA 2 cut(s) 912, 1171
MroI TCCGGA 1 cut(s) 985
MscI TGGCCA 2 cut(s) 912, 1171
MseI TTAA 5 cut(s) 422, 495, 749, 1193, 1404
Msp20I TGGCCA 2 cut(s) 912, 1171
MspA1I CMGCKG 1 cut(s) 632
MspI CCGG 4 cut(s) 243, 775, 986, 1235
MspR9I CCNGG 3 cut(s) 408, 525, 776
Mva1269I GAATGC 1 cut(s) 599
MvaI CCWGG 2 cut(s) 408, 525
MwoI GCNNNNNNNGC 3 cut(s) 14, 1145, 1364
NarI GGCGCC 1 cut(s) 1061
NciI CCSGG 1 cut(s) 776
NdeII GATC 3 cut(s) 394, 626, 982
NlaIII CATG 7 cut(s) 260, 358, 724, 1059, 1088, 1422, 1435
NlaIV GGNNCC 4 cut(s) 440, 984, 1062, 1155
NmuCI GTSAC 1 cut(s) 1109
PagI TCATGA 1 cut(s) 1084
PctI GAATGC 1 cut(s) 599
PfeI GAWTC 8 cut(s) 656, 809, 1081, 1088, 1244, 1282, 1415, 1423
PfoI TCCNGGA 1 cut(s) 523
PkrI GCNGC 2 cut(s) 726, 1366
PleI GAGTC 1 cut(s) 1327
PluTI GGCGCC 1 cut(s) 1064
PpsI GAGTC 1 cut(s) 1327
Psp6I CCWGG 2 cut(s) 406, 523
PspFI CCCAGC 2 cut(s) 632, 1148
PspGI CCWGG 2 cut(s) 406, 523
PspN4I GGNNCC 4 cut(s) 440, 984, 1062, 1155
PspPI GGNCC 1 cut(s) 743
PsuI RGATCY 1 cut(s) 982
PvuII CAGCTG 1 cut(s) 632
RsaI GTAC 2 cut(s) 531, 540
RsaNI GTAC 2 cut(s) 530, 539
SaqAI TTAA 5 cut(s) 422, 495, 749, 1193, 1404
SatI GCNGC 2 cut(s) 725, 1365
Sau3AI GATC 3 cut(s) 394, 626, 982
Sau96I GGNCC 1 cut(s) 743
SchI GAGTC 1 cut(s) 1328
ScrFI CCNGG 3 cut(s) 408, 525, 776
SduI GDGCHC 1 cut(s) 685
SfaNI GCATC 1 cut(s) 117
SfcI CTRYAG 2 cut(s) 18, 42
SfoI GGCGCC 1 cut(s) 1062
SinI GGWCC 1 cut(s) 743
Sse9I AATT 2 cut(s) 1128, 1406
SspDI GGCGCC 1 cut(s) 1060
SspMI CTAG 4 cut(s) 443, 602, 669, 1438
StyD4I CCNGG 3 cut(s) 406, 523, 774
StyI CCWWGG 1 cut(s) 1029
TaaI ACNGT 4 cut(s) 217, 340, 747, 1115
TaiI ACGT 2 cut(s) 303, 803
TaqI TCGA 2 cut(s) 620, 1285
TasI AATT 2 cut(s) 1128, 1406
TatI WGTACW 1 cut(s) 538
TauI GCSGC 1 cut(s) 727
TfiI GAWTC 8 cut(s) 656, 809, 1081, 1088, 1244, 1282, 1415, 1423
Tru1I TTAA 5 cut(s) 422, 495, 749, 1193, 1404
Tru9I TTAA 5 cut(s) 422, 495, 749, 1193, 1404
TscAI CASTG 4 cut(s) 220, 343, 487, 1118
TseFI GTSAC 1 cut(s) 1109
TseI GCWGC 1 cut(s) 1364
Tsp45I GTSAC 1 cut(s) 1109
TspDTI ATGAA 3 cut(s) 273, 606, 1316
TspRI CASTG 4 cut(s) 220, 343, 487, 1118
VpaK11BI GGWCC 1 cut(s) 743
XcmI CCANNNNNNNNNTGG 1 cut(s) 1164
XspI CTAG 4 cut(s) 443, 602, 669, 1438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.