Rorug01G0452900

ankyrin repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004727
Physical Location & Seq
Reverse (-)
54774275 .. 54777232
2958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0452900.1

Sequence Viewer

Length: 711 bp
ATGTCCACCATGGATGCCATAAACACTTGTCACATTTGTTTCAAGAGGTACGACCTGAATGTGGACCTTTTGGATGTTCATGCAGACAAAAGCACATTTCATCATTTTGATAAGTTCAATCTGAAGTACAACCACTGTGGTCAAAGTAGGCTCAGGGAGATTTTCCTTAAGCAGGATAATCTTATCCAAGGCTGTTTCCTTGCTGAGCTGACAAAGCAAGTGTTTTCTGATCTTTCTGCCAGTAAATATCAGATGGCTGAGCACAGAATATCAAAATATGGCAGGAAGCAAAGTGAGTGGGACCAAATGGCTAGTTGGATAGTGAACAATGAATTGTACAGTGAGAATGTTCTGCCACGGCTGTACAATATATACCAGGAAATGGGGATAGTCACATCATTTCAGAACATTCTTGACAATATCTTTATACCGCTGTTTGAGGTTAACATAAATCCAGATTCCCACCCGCTGTTGCAGGTTTTTCTGAAACAGGTGATGAAGATGGAGGTTGACTACAAAGTGGTATCAATCGGATTTTCTGCAGACATTGGATACTTATTAGGAGATCAACACGAGCATTGCAGGTCTGTCGAACAAGGAAATGCAGAACCTTCAAAGGTTCCAGATGCAACTAGTGATCATGAAATTCGGAGGGAATCTGTAGGAGAAGAAGGGAATCCAGATTCAAGCTGTGATAGAGCAATGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

27.28

Weight (kDa)

5.24

Isoelectric Point (pI)

45.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP_deaminase PF19326 14 - 168 1.5e-73 AMP deaminase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 466, 573
AccB7I CCANNNNNTGG 1 cut(s) 382
AciI CCGC 2 cut(s) 431, 467
AcsI RAATTY 1 cut(s) 645
AcuI CTGAAG 1 cut(s) 143
AfaI GTAC 4 cut(s) 50, 128, 338, 365
AfiI CCNNNNNNNGG 3 cut(s) 61, 172, 382
AflII CTTAAG 1 cut(s) 167
AgsI TTSAA 4 cut(s) 43, 118, 615, 687
AhlI ACTAGT 1 cut(s) 632
AjnI CCWGG 1 cut(s) 375
AluBI AGCT 2 cut(s) 208, 690
AluI AGCT 2 cut(s) 208, 690
Alw21I GWGCWC 1 cut(s) 264
ApoI RAATTY 1 cut(s) 645
AspS9I GGNCC 2 cut(s) 64, 301
AsuHPI GGTGA 1 cut(s) 505
AvaII GGWCC 2 cut(s) 64, 301
BauI CACGAG 1 cut(s) 572
Bbv12I GWGCWC 1 cut(s) 264
BccI CCATC 2 cut(s) 247, 496
BceAI ACGGC 1 cut(s) 374
BcgI CGANNNNNNTGC 2 cut(s) 571, 605
BciT130I CCWGG 1 cut(s) 377
BciVI GTATCC 1 cut(s) 545
BclI TGATCA 1 cut(s) 637
BcuI ACTAGT 1 cut(s) 632
BfaI CTAG 2 cut(s) 312, 633
BfmI CTRYAG 2 cut(s) 540, 660
BfrI CTTAAG 1 cut(s) 167
BfuAI ACCTGC 2 cut(s) 466, 573
BfuI GTATCC 1 cut(s) 545
BlpI GCTNAGC 2 cut(s) 204, 258
Bme1390I CCNGG 1 cut(s) 377
Bme18I GGWCC 2 cut(s) 64, 301
BmgT120I GGNCC 2 cut(s) 64, 301
BmiI GGNNCC 2 cut(s) 302, 621
BmrFI CCNGG 1 cut(s) 377
BmsI GCATC 2 cut(s) 4, 616
Bpu10I CCTNAGC 1 cut(s) 152
Bpu1102I GCTNAGC 2 cut(s) 204, 258
BsaJI CCNNGG 3 cut(s) 9, 187, 356
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 172, 382
Bse1I ACTGG 1 cut(s) 240
Bse3DI GCAATG 2 cut(s) 577, 708
BseBI CCWGG 1 cut(s) 377
BseDI CCNNGG 3 cut(s) 9, 187, 356
BseGI GGATG 2 cut(s) 19, 79
BseLI CCNNNNNNNGG 3 cut(s) 61, 172, 382
BseMI GCAATG 2 cut(s) 577, 708
BseMII CTCAG 3 cut(s) 166, 195, 249
BseNI ACTGG 1 cut(s) 240
BsiHKAI GWGCWC 1 cut(s) 264
BslFI GGGAC 1 cut(s) 314
BslI CCNNNNNNNGG 3 cut(s) 61, 172, 382
BsmFI GGGAC 1 cut(s) 314
Bsp1286I GDGCHC 1 cut(s) 264
Bsp1407I TGTACA 2 cut(s) 336, 363
Bsp143I GATC 3 cut(s) 229, 565, 637
Bsp1720I GCTNAGC 2 cut(s) 204, 258
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 2 cut(s) 431, 467
BspCNI CTCAG 3 cut(s) 165, 196, 250
BspHI TCATGA 1 cut(s) 640
BspLI GGNNCC 2 cut(s) 302, 621
BspMAI CTGCAG 1 cut(s) 544
BspMI ACCTGC 2 cut(s) 466, 573
BspTI CTTAAG 1 cut(s) 167
BsrDI GCAATG 2 cut(s) 577, 708
BsrGI TGTACA 2 cut(s) 336, 363
BsrI ACTGG 1 cut(s) 240
BssECI CCNNGG 3 cut(s) 9, 187, 356
BssMI GATC 3 cut(s) 229, 565, 637
BssSI CACGAG 1 cut(s) 572
BssT1I CCWWGG 2 cut(s) 9, 187
Bst2BI CACGAG 1 cut(s) 572
Bst2UI CCWGG 1 cut(s) 377
Bst4CI ACNGT 2 cut(s) 137, 341
BstAFI CTTAAG 1 cut(s) 167
BstAUI TGTACA 2 cut(s) 336, 363
BstDEI CTNAG 3 cut(s) 152, 204, 258
BstDSI CCRYGG 2 cut(s) 9, 356
BstENI CCTNNNNNAGG 1 cut(s) 170
BstF5I GGATG 2 cut(s) 19, 79
BstKTI GATC 3 cut(s) 232, 568, 640
BstMBI GATC 3 cut(s) 229, 565, 637
BstMWI GCNNNNNNNGC 1 cut(s) 214
BstNI CCWGG 1 cut(s) 377
BstSCI CCNGG 1 cut(s) 375
BstSFI CTRYAG 2 cut(s) 540, 660
BsuI GTATCC 1 cut(s) 545
BtgI CCRYGG 2 cut(s) 9, 356
BtsCI GGATG 2 cut(s) 19, 79
BtsIMutI CAGTG 2 cut(s) 133, 346
BveI ACCTGC 2 cut(s) 466, 573
CciI TCATGA 1 cut(s) 640
Cfr13I GGNCC 2 cut(s) 64, 301
Csp6I GTAC 4 cut(s) 49, 127, 337, 364
CspCI CAANNNNNGTGG 4 cut(s) 118, 153, 278, 313
CviAII CATG 3 cut(s) 10, 80, 641
CviJI RGCY 7 cut(s) 151, 192, 208, 257, 311, 361, 690
CviKI_1 RGCY 7 cut(s) 151, 192, 208, 257, 311, 361, 690
CviQI GTAC 4 cut(s) 49, 127, 337, 364
DdeI CTNAG 3 cut(s) 152, 204, 258
DpnI GATC 3 cut(s) 231, 567, 639
DpnII GATC 3 cut(s) 229, 565, 637
Eco130I CCWWGG 2 cut(s) 9, 187
Eco47I GGWCC 2 cut(s) 64, 301
Eco57I CTGAAG 1 cut(s) 143
EcoNI CCTNNNNNAGG 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 375
EcoT14I CCWWGG 2 cut(s) 9, 187
ErhI CCWWGG 2 cut(s) 9, 187
FaeI CATG 3 cut(s) 13, 83, 644
FaiI YATR 9 cut(s) 11, 20, 81, 279, 371, 373, 428, 449, 642
FaqI GGGAC 1 cut(s) 314
FatI CATG 3 cut(s) 9, 79, 640
FauI CCCGC 1 cut(s) 474
FbaI TGATCA 1 cut(s) 637
FokI GGATG 2 cut(s) 26, 86
FspBI CTAG 2 cut(s) 312, 633
Hin1II CATG 3 cut(s) 13, 83, 644
HincII GTYRAC 2 cut(s) 445, 511
HindII GTYRAC 2 cut(s) 445, 511
HinfI GANTC 4 cut(s) 458, 656, 676, 683
HpaI GTTAAC 1 cut(s) 445
HphI GGTGA 1 cut(s) 505
Hpy166II GTNNAC 5 cut(s) 6, 64, 325, 445, 511
Hpy188I TCNGA 7 cut(s) 123, 229, 252, 405, 486, 533, 651
Hpy188III TCNNGA 6 cut(s) 43, 413, 455, 623, 641, 680
Hpy8I GTNNAC 5 cut(s) 6, 64, 325, 445, 511
HpyAV CCTTC 2 cut(s) 621, 665
HpyCH4III ACNGT 2 cut(s) 137, 341
HpyCH4V TGCA 6 cut(s) 83, 475, 542, 582, 605, 629
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
HpyF3I CTNAG 3 cut(s) 152, 204, 258
Hsp92II CATG 3 cut(s) 13, 83, 644
Ksp22I TGATCA 1 cut(s) 637
KspAI GTTAAC 1 cut(s) 445
Kzo9I GATC 3 cut(s) 229, 565, 637
LweI GCATC 2 cut(s) 4, 616
MaeI CTAG 2 cut(s) 312, 633
MaeIII GTNAC 2 cut(s) 29, 391
MalI GATC 3 cut(s) 231, 567, 639
MboI GATC 3 cut(s) 229, 565, 637
MboII GAAGA 2 cut(s) 511, 680
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 2 cut(s) 332, 645
MmeI TCCRAC 1 cut(s) 296
MnlI CCTC 4 cut(s) 39, 433, 499, 645
MseI TTAA 2 cut(s) 168, 444
MspA1I CMGCKG 2 cut(s) 433, 469
MspCI CTTAAG 1 cut(s) 167
MspR9I CCNGG 1 cut(s) 377
MvaI CCWGG 1 cut(s) 377
MwoI GCNNNNNNNGC 1 cut(s) 214
NcoI CCATGG 1 cut(s) 9
NdeII GATC 3 cut(s) 229, 565, 637
NlaIII CATG 3 cut(s) 13, 83, 644
NlaIV GGNNCC 2 cut(s) 302, 621
NmuCI GTSAC 2 cut(s) 29, 391
PagI TCATGA 1 cut(s) 640
PfeI GAWTC 4 cut(s) 458, 656, 676, 683
PflMI CCANNNNNTGG 1 cut(s) 382
Psp6I CCWGG 1 cut(s) 375
PspGI CCWGG 1 cut(s) 375
PspN4I GGNNCC 2 cut(s) 302, 621
PspPI GGNCC 2 cut(s) 64, 301
PstI CTGCAG 1 cut(s) 544
RsaI GTAC 4 cut(s) 50, 128, 338, 365
RsaNI GTAC 4 cut(s) 49, 127, 337, 364
SaqAI TTAA 2 cut(s) 168, 444
Sau3AI GATC 3 cut(s) 229, 565, 637
Sau96I GGNCC 2 cut(s) 64, 301
ScrFI CCNGG 1 cut(s) 377
SduI GDGCHC 1 cut(s) 264
SfaNI GCATC 2 cut(s) 4, 616
SfcI CTRYAG 2 cut(s) 540, 660
SinI GGWCC 2 cut(s) 64, 301
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
SpeI ACTAGT 1 cut(s) 632
Sse9I AATT 2 cut(s) 332, 645
SsiI CCGC 2 cut(s) 431, 467
SspMI CTAG 2 cut(s) 312, 633
StyD4I CCNGG 1 cut(s) 375
StyI CCWWGG 2 cut(s) 9, 187
TaaI ACNGT 2 cut(s) 137, 341
TaqI TCGA 1 cut(s) 591
TasI AATT 2 cut(s) 332, 645
TatI WGTACW 3 cut(s) 126, 336, 363
TfiI GAWTC 4 cut(s) 458, 656, 676, 683
Tru1I TTAA 2 cut(s) 168, 444
Tru9I TTAA 2 cut(s) 168, 444
TscAI CASTG 2 cut(s) 140, 346
TseFI GTSAC 2 cut(s) 29, 391
Tsp45I GTSAC 2 cut(s) 29, 391
TspDTI ATGAA 5 cut(s) 68, 89, 345, 512, 657
TspRI CASTG 2 cut(s) 140, 346
Van91I CCANNNNNTGG 1 cut(s) 382
Vha464I CTTAAG 1 cut(s) 167
VpaK11BI GGWCC 2 cut(s) 64, 301
XagI CCTNNNNNAGG 1 cut(s) 170
XapI RAATTY 1 cut(s) 645
XspI CTAG 2 cut(s) 312, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.