Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0015007

Physical Location & Seq

Genomic Coordinates Reverse (-)

7927771 .. 7930027

Gene Structure 2257 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00224690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGACTCAAAGATTGTTTGCTTTCTCTTCTTTGCTCTTCTAATCTCTCTCACCAAAGCTGTTGATCCTTGTGCTTCCCAAAGCTATGGCTCAGGTGACCTCTCCATAATTCCAACCTATAGCAAATGCTCTCCCTTAACTTCACCCAAGACCGACCCGTTCAACACAGTCCTAAACATGGCCTCCAAAGACCCGGAGCGGTTCAAGTACTTGTCAAACCTAGTGGCCCAAAAGACCACTTCGGCTCCGATTGCTTCGGGCCAACAGGTCCTAAACATTCCCAGCTACATAGTCCAGATCAAGTTGGGCACCCCGGGCCAGCTCATGTACATGGTCCTTGACACAAGTAACGACATTGCATGGGTCCCATGCTCGGGGTGCACCGGGTGCTCCTCCACCACATTCTCGCCCAACACGTCCACAACTTACGGGCAGTTGGACTGCTCGGTGCCCGAATGCGCTCAGGCCCGAGGGCTCTCGTGCCCGGCCGGGTCTCCTGTCGGGTGCTCATTTAACCAATCGTACGGTGGAGGCTCGTCATTTTCTGCCTCGCTCGTCCAAGATGCCTTGGGATTAGAAAAGATGTCATTCCGAAATACTCTTTCGGGTGCATCAATTCCATCTCTGGCGGGAACATCCCGCCACAGGGGCTATTGGGCTTGGGCCGTGGATCCATGTCGTTGCTCTCGCAATCCGGATCGCTTTACTCGGGAGTGTTCTCATATTGTTTACCCAGTTTCAAATCTTACTACTTTTCCGGGTCCCTCAAGCTGGGCCCTGTCGGCCAGCCCAAGTCCATCAGAACCACCCCACTTCTCAAAACCCTCGCCGGCCATCCTTGTATTACGCCAACCTCACCGGAATCAGCGTCGGCAAGGTCCTCGTGCCCATTGCCCCACAATTCCTAGCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009505 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0010941 GO:0016787 GO:0019538 GO:0030163 GO:0030312 GO:0043067 GO:0043170 GO:0043207 GO:0044238 GO:0044464 GO:0045087 GO:0048046 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

304

Amino Acids

32.55

Weight (kDa)

8.85

Isoelectric Point (pI)

51.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	96 - 201	4.4e-18	Xylanase inhibitor N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09750
fragaria_vesca	FvH4_5g35540
malus_domestica	MD08G1195800.v1.1 MD15G1383700.v1.1
prunus_persica	Prupe.1G529800_v2.0.a1
pyrus_communis	pycom08g16820 pycom15g34330
rosa_chinensis	RchiOBHm_Chr7g0236921
rosa_laevigata	RLG00000001048
rosa_roxburghii	Rroxscaffold_3G00224690
rosa_rugosa	Rorug07G0301000
rosa_samantha	Rh7AG455900 Rh7BG427200 Rh7CG474700 Rh7DG443800
rosa_wichuraiana	Rw7G037840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	308, 448
AccBSI	CCGCTC	1 cut(s)	199
AccIII	TCCGGA	1 cut(s)	694
AciI	CCGC	3 cut(s)	199, 629, 640
AclWI	GGATC	4 cut(s)	59, 665, 678, 705
AcoI	YGGCCR	3 cut(s)	486, 783, 831
AdeI	CACNNNGTG	1 cut(s)	387
AfaI	GTAC	3 cut(s)	209, 329, 524
AfiI	CCNNNNNNNGG	6 cut(s)	178, 373, 374, 645, 646, 771
AflIII	ACRYGT	1 cut(s)	414
AgsI	TTSAA	3 cut(s)	163, 205, 741
AjiI	CACGTC	1 cut(s)	417
AluBI	AGCT	5 cut(s)	59, 84, 285, 322, 771
AluI	AGCT	5 cut(s)	59, 84, 285, 322, 771
Alw21I	GWGCWC	3 cut(s)	383, 392, 509
Alw26I	GTCTC	1 cut(s)	498
Alw44I	GTGCAC	1 cut(s)	379
AlwI	GGATC	4 cut(s)	59, 665, 678, 705
Ama87I	CYCGRG	4 cut(s)	313, 373, 468, 708
Aor13HI	TCCGGA	1 cut(s)	694
ApaI	GGGCCC	1 cut(s)	778
ApaLI	GTGCAC	1 cut(s)	379
AspLEI	GCGC	1 cut(s)	461
AsuC2I	CCSGG	7 cut(s)	194, 314, 315, 385, 485, 490, 759
AsuHPI	GGTGA	4 cut(s)	43, 107, 135, 848
AvaI	CYCGRG	4 cut(s)	313, 373, 468, 708
AvaII	GGWCC	5 cut(s)	268, 334, 364, 761, 878
BaeGI	GKGCMC	6 cut(s)	311, 383, 453, 485, 778, 889
BamHI	GGATCC	1 cut(s)	670
BanI	GGYRCC	2 cut(s)	308, 448
BanII	GRGCYC	2 cut(s)	477, 778
BauI	CACGAG	2 cut(s)	478, 882
Bbv12I	GWGCWC	3 cut(s)	383, 392, 509
BccI	CCATC	3 cut(s)	628, 805, 842
BceAI	ACGGC	1 cut(s)	650
BcgI	CGANNNNNNTGC	2 cut(s)	863, 897
BcnI	CCSGG	7 cut(s)	194, 314, 315, 385, 485, 490, 759
BcoDI	GTCTC	1 cut(s)	498
BfaI	CTAG	2 cut(s)	221, 906
BfmI	CTRYAG	1 cut(s)	118
BglI	GCCNNNNNGGC	2 cut(s)	648, 782
BmcAI	AGTACT	1 cut(s)	209
Bme1390I	CCNGG	7 cut(s)	194, 314, 315, 385, 485, 490, 759
Bme18I	GGWCC	5 cut(s)	268, 334, 364, 761, 878
BmeT110I	CYCGRG	4 cut(s)	313, 373, 468, 708
BmgBI	CACGTC	1 cut(s)	417
BmiI	GGNNCC	9 cut(s)	246, 310, 365, 366, 450, 672, 762, 763, 776
BmrFI	CCNGG	7 cut(s)	194, 314, 315, 385, 485, 490, 759
BmrI	ACTGGG	1 cut(s)	728
BmsI	GCATC	2 cut(s)	553, 620
BmuI	ACTGGG	1 cut(s)	728
Bpu10I	CCTNAGC	2 cut(s)	91, 462
BpuEI	CTTGAG	1 cut(s)	751
BpuMI	CCSGG	7 cut(s)	194, 314, 315, 385, 485, 490, 759
BsaI	GGTCTC	1 cut(s)	498
BsaJI	CCNNGG	5 cut(s)	312, 313, 469, 567, 666
BsaWI	WCCGGW	2 cut(s)	694, 858
BsaXI	ACNNNNNCTCC	4 cut(s)	167, 197, 229, 259
Bsc4I	CCNNNNNNNGG	6 cut(s)	178, 373, 374, 645, 646, 771
Bse118I	RCCGGY	1 cut(s)	829
Bse1I	ACTGG	1 cut(s)	734
Bse3DI	GCAATG	2 cut(s)	354, 889
BseAI	TCCGGA	1 cut(s)	694
BseDI	CCNNGG	5 cut(s)	312, 313, 469, 567, 666
BseGI	GGATG	2 cut(s)	635, 834
BseLI	CCNNNNNNNGG	6 cut(s)	178, 373, 374, 645, 646, 771
BseMI	GCAATG	2 cut(s)	354, 889
BseMII	CTCAG	2 cut(s)	105, 476
BseNI	ACTGG	1 cut(s)	734
BseRI	GAGGAG	1 cut(s)	382
BseSI	GKGCMC	6 cut(s)	311, 383, 453, 485, 778, 889
BseX3I	CGGCCG	1 cut(s)	486
BseYI	CCCAGC	2 cut(s)	281, 771
Bsh1285I	CGRYCG	1 cut(s)	489
BshNI	GGYRCC	2 cut(s)	308, 448
BsiEI	CGRYCG	1 cut(s)	489
BsiHKAI	GWGCWC	3 cut(s)	383, 392, 509
BsiHKCI	CYCGRG	4 cut(s)	313, 373, 468, 708
BsiSI	CCGG	9 cut(s)	194, 314, 384, 485, 489, 695, 758, 830, 859
BsiWI	CGTACG	1 cut(s)	522
BslFI	GGGAC	2 cut(s)	350, 747
BslI	CCNNNNNNNGG	6 cut(s)	178, 373, 374, 645, 646, 771
BsmAI	GTCTC	1 cut(s)	498
BsmFI	GGGAC	2 cut(s)	350, 747
BsmI	GAATGC	1 cut(s)	461
Bso31I	GGTCTC	1 cut(s)	498
BsoBI	CYCGRG	4 cut(s)	313, 373, 468, 708
Bsp120I	GGGCCC	1 cut(s)	774
Bsp1286I	GDGCHC	9 cut(s)	311, 383, 392, 453, 477, 485, 509, 778, 889
Bsp13I	TCCGGA	1 cut(s)	694
Bsp1407I	TGTACA	1 cut(s)	327
Bsp143I	GATC	4 cut(s)	64, 297, 670, 697
BspACI	CCGC	3 cut(s)	199, 629, 640
BspCNI	CTCAG	2 cut(s)	104, 475
BspEI	TCCGGA	1 cut(s)	694
BspLI	GGNNCC	9 cut(s)	246, 310, 365, 366, 450, 672, 762, 763, 776
BspPI	GGATC	4 cut(s)	59, 665, 678, 705
BspQI	GCTCTTC	1 cut(s)	42
BspT107I	GGYRCC	2 cut(s)	308, 448
BspTNI	GGTCTC	1 cut(s)	498
BsrBI	CCGCTC	1 cut(s)	199
BsrDI	GCAATG	2 cut(s)	354, 889
BsrFI	RCCGGY	1 cut(s)	829
BsrGI	TGTACA	1 cut(s)	327
BsrI	ACTGG	1 cut(s)	734
BssAI	RCCGGY	1 cut(s)	829
BssECI	CCNNGG	5 cut(s)	312, 313, 469, 567, 666
BssMI	GATC	4 cut(s)	64, 297, 670, 697
BssSI	CACGAG	2 cut(s)	478, 882
BssT1I	CCWWGG	1 cut(s)	567
Bst2BI	CACGAG	2 cut(s)	478, 882
Bst4CI	ACNGT	2 cut(s)	169, 527
Bst6I	CTCTTC	2 cut(s)	32, 42
BstAPI	GCANNNNNTGC	1 cut(s)	387
BstAUI	TGTACA	1 cut(s)	327
BstC8I	GCNNGC	3 cut(s)	320, 787, 831
BstDEI	CTNAG	2 cut(s)	91, 462
BstDSI	CCRYGG	1 cut(s)	666
BstEII	GGTNACC	1 cut(s)	95
BstF5I	GGATG	2 cut(s)	635, 834
BstHHI	GCGC	1 cut(s)	461
BstKTI	GATC	4 cut(s)	67, 300, 673, 700
BstMAI	GTCTC	1 cut(s)	498
BstMBI	GATC	4 cut(s)	64, 297, 670, 697
BstMCI	CGRYCG	1 cut(s)	489
BstMWI	GCNNNNNNNGC	6 cut(s)	251, 315, 378, 387, 648, 782
BstPI	GGTNACC	1 cut(s)	95
BstSCI	CCNGG	7 cut(s)	192, 312, 313, 383, 483, 488, 757
BstSFI	CTRYAG	1 cut(s)	118
BstSLI	GKGCMC	6 cut(s)	311, 383, 453, 485, 778, 889
BstX2I	RGATCY	1 cut(s)	670
BstXI	CCANNNNNNTGG	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	670
BstZI	CGGCCG	1 cut(s)	486
BtgI	CCRYGG	1 cut(s)	666
BtrI	CACGTC	1 cut(s)	417
BtsCI	GGATG	2 cut(s)	635, 834
Cac8I	GCNNGC	3 cut(s)	320, 787, 831
CfoI	GCGC	1 cut(s)	461
Cfr10I	RCCGGY	1 cut(s)	829
Cfr9I	CCCGGG	1 cut(s)	313
CseI	GACGC	1 cut(s)	857
Csp6I	GTAC	3 cut(s)	208, 328, 523
CspCI	CAANNNNNGTGG	2 cut(s)	204, 239
CviAII	CATG	6 cut(s)	178, 325, 331, 360, 369, 675
CviQI	GTAC	3 cut(s)	208, 328, 523
DdeI	CTNAG	2 cut(s)	91, 462
DpnI	GATC	4 cut(s)	66, 299, 672, 699
DpnII	GATC	4 cut(s)	64, 297, 670, 697
DraIII	CACNNNGTG	1 cut(s)	387
EaeI	YGGCCR	3 cut(s)	486, 783, 831
EagI	CGGCCG	1 cut(s)	486
Eam1104I	CTCTTC	2 cut(s)	32, 42
EarI	CTCTTC	2 cut(s)	32, 42
EclXI	CGGCCG	1 cut(s)	486
Eco130I	CCWWGG	1 cut(s)	567
Eco24I	GRGCYC	2 cut(s)	477, 778
Eco31I	GGTCTC	1 cut(s)	498
Eco47I	GGWCC	5 cut(s)	268, 334, 364, 761, 878
Eco52I	CGGCCG	1 cut(s)	486
Eco88I	CYCGRG	4 cut(s)	313, 373, 468, 708
Eco91I	GGTNACC	1 cut(s)	95
EcoO109I	RGGNCCY	5 cut(s)	268, 364, 761, 775, 878
EcoO65I	GGTNACC	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	567
EcoT38I	GRGCYC	2 cut(s)	477, 778
ErhI	CCWWGG	1 cut(s)	567
FaeI	CATG	6 cut(s)	181, 328, 334, 363, 372, 678
FaqI	GGGAC	2 cut(s)	350, 747
FatI	CATG	6 cut(s)	177, 324, 330, 359, 368, 674
FauI	CCCGC	2 cut(s)	622, 647
FokI	GGATG	2 cut(s)	622, 821
FriOI	GRGCYC	2 cut(s)	477, 778
FspBI	CTAG	2 cut(s)	221, 906
GlaI	GCGC	1 cut(s)	460
GsaI	CCCAGC	2 cut(s)	285, 775
HapII	CCGG	9 cut(s)	194, 314, 384, 485, 489, 695, 758, 830, 859
HgaI	GACGC	1 cut(s)	857
HhaI	GCGC	1 cut(s)	461
Hin1II	CATG	6 cut(s)	181, 328, 334, 363, 372, 678
Hin6I	GCGC	1 cut(s)	459
HinP1I	GCGC	1 cut(s)	459
HinfI	GANTC	2 cut(s)	5, 862
HpaII	CCGG	9 cut(s)	194, 314, 384, 485, 489, 695, 758, 830, 859
HphI	GGTGA	4 cut(s)	43, 107, 135, 848
Hpy166II	GTNNAC	3 cut(s)	381, 420, 730
Hpy188I	TCNGA	3 cut(s)	249, 593, 802
Hpy188III	TCNNGA	3 cut(s)	295, 695, 710
Hpy8I	GTNNAC	3 cut(s)	381, 420, 730
Hpy99I	CGWCG	1 cut(s)	873
HpyCH4III	ACNGT	2 cut(s)	169, 527
HpyCH4IV	ACGT	1 cut(s)	416
HpyCH4V	TGCA	3 cut(s)	359, 381, 611
HpyF10VI	GCNNNNNNNGC	6 cut(s)	251, 315, 378, 387, 648, 782
HpyF3I	CTNAG	2 cut(s)	91, 462
HpySE526I	ACGT	1 cut(s)	416
Hsp92II	CATG	6 cut(s)	181, 328, 334, 363, 372, 678
HspAI	GCGC	1 cut(s)	459
KflI	GGGWCCC	2 cut(s)	364, 761
Kpn2I	TCCGGA	1 cut(s)	694
KroI	GCCGGC	1 cut(s)	829
KroNI	GCCGGC	1 cut(s)	831
Kzo9I	GATC	4 cut(s)	64, 297, 670, 697
LguI	GCTCTTC	1 cut(s)	42
LmnI	GCTCC	3 cut(s)	196, 250, 395
LweI	GCATC	2 cut(s)	553, 620
MaeI	CTAG	2 cut(s)	221, 906
MaeII	ACGT	1 cut(s)	416
MaeIII	GTNAC	2 cut(s)	95, 347
MalI	GATC	4 cut(s)	66, 299, 672, 699
MbiI	CCGCTC	1 cut(s)	199
MboI	GATC	4 cut(s)	64, 297, 670, 697
MboII	GAAGA	2 cut(s)	19, 29
MflI	RGATCY	1 cut(s)	670
MhlI	GDGCHC	9 cut(s)	311, 383, 392, 453, 477, 485, 509, 778, 889
MluCI	AATT	3 cut(s)	108, 615, 900
MmeI	TCCRAC	2 cut(s)	137, 417
MroI	TCCGGA	1 cut(s)	694
MroNI	GCCGGC	1 cut(s)	829
MseI	TTAA	2 cut(s)	137, 513
MslI	CAYNNNNRTG	1 cut(s)	329
MspI	CCGG	9 cut(s)	194, 314, 384, 485, 489, 695, 758, 830, 859
MspR9I	CCNGG	7 cut(s)	194, 314, 315, 385, 485, 490, 759
Mva1269I	GAATGC	1 cut(s)	461
MwoI	GCNNNNNNNGC	6 cut(s)	251, 315, 378, 387, 648, 782
NaeI	GCCGGC	1 cut(s)	831
NciI	CCSGG	7 cut(s)	194, 314, 315, 385, 485, 490, 759
NdeII	GATC	4 cut(s)	64, 297, 670, 697
NgoMIV	GCCGGC	1 cut(s)	829
NlaIII	CATG	6 cut(s)	181, 328, 334, 363, 372, 678
NlaIV	GGNNCC	9 cut(s)	246, 310, 365, 366, 450, 672, 762, 763, 776
NmuCI	GTSAC	1 cut(s)	95
PciSI	GCTCTTC	1 cut(s)	42
PcsI	WCGNNNNNNNCGW	1 cut(s)	413
PctI	GAATGC	1 cut(s)	461
PdiI	GCCGGC	1 cut(s)	831
PfeI	GAWTC	1 cut(s)	862
Pfl23II	CGTACG	1 cut(s)	522
PpuMI	RGGWCCY	4 cut(s)	268, 364, 761, 878
Psp5II	RGGWCCY	4 cut(s)	268, 364, 761, 878
PspEI	GGTNACC	1 cut(s)	95
PspFI	CCCAGC	2 cut(s)	281, 771
PspLI	CGTACG	1 cut(s)	522
PspN4I	GGNNCC	9 cut(s)	246, 310, 365, 366, 450, 672, 762, 763, 776
PspOMI	GGGCCC	1 cut(s)	774
PspPPI	RGGWCCY	4 cut(s)	268, 364, 761, 878
PsuI	RGATCY	1 cut(s)	670
RsaI	GTAC	3 cut(s)	209, 329, 524
RsaNI	GTAC	3 cut(s)	208, 328, 523
RseI	CAYNNNNRTG	1 cut(s)	329
SapI	GCTCTTC	1 cut(s)	42
SaqAI	TTAA	2 cut(s)	137, 513
Sau3AI	GATC	4 cut(s)	64, 297, 670, 697
ScaI	AGTACT	1 cut(s)	209
ScrFI	CCNGG	7 cut(s)	194, 314, 315, 385, 485, 490, 759
SduI	GDGCHC	9 cut(s)	311, 383, 392, 453, 477, 485, 509, 778, 889
SfaNI	GCATC	2 cut(s)	553, 620
SfcI	CTRYAG	1 cut(s)	118
SfiI	GGCCNNNNNGGCC	1 cut(s)	782
SinI	GGWCC	5 cut(s)	268, 334, 364, 761, 878
SmaI	CCCGGG	1 cut(s)	315
SmiMI	CAYNNNNRTG	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	766
SmoI	CTYRAG	1 cut(s)	766
Sse9I	AATT	3 cut(s)	108, 615, 900
SsiI	CCGC	3 cut(s)	199, 629, 640
SspMI	CTAG	2 cut(s)	221, 906
StyD4I	CCNGG	7 cut(s)	192, 312, 313, 383, 483, 488, 757
StyI	CCWWGG	1 cut(s)	567
TaaI	ACNGT	2 cut(s)	169, 527
TaiI	ACGT	1 cut(s)	419
TaqII	GACCGA	1 cut(s)	167
TasI	AATT	3 cut(s)	108, 615, 900
TatI	WGTACW	2 cut(s)	207, 327
TfiI	GAWTC	1 cut(s)	862
Tru1I	TTAA	2 cut(s)	137, 513
Tru9I	TTAA	2 cut(s)	137, 513
TseFI	GTSAC	1 cut(s)	95
Tsp45I	GTSAC	1 cut(s)	95
TspMI	CCCGGG	1 cut(s)	313
VneI	GTGCAC	1 cut(s)	379
VpaK11BI	GGWCC	5 cut(s)	268, 334, 364, 761, 878
XcmI	CCANNNNNNNNNTGG	1 cut(s)	524
XmaI	CCCGGG	1 cut(s)	313
XspI	CTAG	2 cut(s)	221, 906
ZrmI	AGTACT	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.