Rroxscaffold_3G00227160

UNC93-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0017900
Physical Location & Seq
Forward (+)
11192320 .. 11203164
10845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00227160.1

Sequence Viewer

Length: 618 bp
ATGTCGCTTGGGATTTTGTACTTGTCTCTAGTGGTTAGGAAGCTGGGACCAAAGAATGCTTTGATTCTTAGGACTACTGGATATTGGTTGTTCATTGCTACTAATTTGAAGCCAACTTGCAAGGTCATCAAATCCCTTATTTTGGACATTGTTAGCGAACTAAGAAAGTGTAGAGACAAAGAAAGTCTAGAGATGAAGAAGGGATTGAAAGGTTTTCAACAATCTTCAACTATGACAGTGAGGACTGGGAAGGAAGACATTAGAACCATAACCAAGAATGCCCACTCTGTGGTAATGATCCAAAGCTCAAGAAGCAACGAAAATGAGTTTTGGAGTGGGATCTTAGAGCTCGAGAAGCAAATTATGTATGATGTTGTTAGCTTTGAGATGGGATTTGTTGAATTTGGGAGCAGGGTGGCTCCAGGAGTTGTGGTTGGATTATTAGAAGATATTTTAATGGATTCCCTTGATTTTGTATCCCCAAATATTGAAGGTTTCCTTATTGGTCGATTCCCTATTACAAGTCGAATCTTGTTGGTCCTTCCAATATATCCGTTACAGTTGACCTGGCAACGAGAACCAAACCCTAACCTTTCGGTCTGGAGTAGCAAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UNC-93

Protein Analysis

205

Amino Acids

23.2

Weight (kDa)

9.25

Isoelectric Point (pI)

43.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017900)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57565 AT5G57565 AT5G57565 AT5G57565 AT5G57565 AT5G57565
rosa_roxburghii Rroxscaffold_1G00016000 Rroxscaffold_2G00113020 Rroxscaffold_3G00227160
rosa_rugosa Rorug06G0073300
rosa_samantha Rh3AG270100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 289
AclWI GGATC 2 cut(s) 292, 347
AcsI RAATTY 1 cut(s) 401
AdeI CACNNNGTG 1 cut(s) 289
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 2 cut(s) 142, 289
AgsI TTSAA 6 cut(s) 109, 208, 218, 228, 401, 491
AjnI CCWGG 2 cut(s) 421, 566
AluBI AGCT 4 cut(s) 43, 306, 349, 381
AluI AGCT 4 cut(s) 43, 306, 349, 381
Alw21I GWGCWC 1 cut(s) 351
Alw26I GTCTC 2 cut(s) 30, 168
AlwI GGATC 2 cut(s) 292, 347
Ama87I CYCGRG 1 cut(s) 350
ApoI RAATTY 1 cut(s) 401
AspS9I GGNCC 2 cut(s) 47, 538
AvaI CYCGRG 1 cut(s) 350
AvaII GGWCC 2 cut(s) 47, 538
BanII GRGCYC 1 cut(s) 351
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 351
BccI CCATC 1 cut(s) 382
BciT130I CCWGG 2 cut(s) 423, 568
BciVI GTATCC 1 cut(s) 487
BcoDI GTCTC 2 cut(s) 30, 168
BfaI CTAG 3 cut(s) 29, 188, 616
BfuI GTATCC 1 cut(s) 487
Bme1390I CCNGG 2 cut(s) 423, 568
Bme18I GGWCC 2 cut(s) 47, 538
BmeT110I CYCGRG 1 cut(s) 350
BmgT120I GGNCC 2 cut(s) 47, 538
BmiI GGNNCC 2 cut(s) 48, 420
BmrFI CCNGG 2 cut(s) 423, 568
BmrI ACTGGG 1 cut(s) 255
BmuI ACTGGG 1 cut(s) 255
BpiI GAAGAC 1 cut(s) 261
BpmI CTGGAG 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 292
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 289
Bse1I ACTGG 2 cut(s) 82, 250
Bse3DI GCAATG 1 cut(s) 93
BseBI CCWGG 2 cut(s) 423, 568
BseLI CCNNNNNNNGG 2 cut(s) 142, 289
BseMI GCAATG 1 cut(s) 93
BseNI ACTGG 2 cut(s) 82, 250
BseYI CCCAGC 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 351
BsiHKCI CYCGRG 1 cut(s) 350
BslFI GGGAC 1 cut(s) 60
BslI CCNNNNNNNGG 2 cut(s) 142, 289
BsmAI GTCTC 2 cut(s) 30, 168
BsmFI GGGAC 1 cut(s) 60
BsmI GAATGC 2 cut(s) 61, 283
BsoBI CYCGRG 1 cut(s) 350
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 2 cut(s) 297, 339
BspLI GGNNCC 2 cut(s) 48, 420
BspPI GGATC 2 cut(s) 292, 347
BsrDI GCAATG 1 cut(s) 93
BsrI ACTGG 2 cut(s) 82, 250
BssMI GATC 2 cut(s) 297, 339
Bst2UI CCWGG 2 cut(s) 423, 568
Bst4CI ACNGT 2 cut(s) 238, 561
BstDEI CTNAG 3 cut(s) 68, 161, 343
BstKTI GATC 2 cut(s) 300, 342
BstMAI GTCTC 2 cut(s) 30, 168
BstMBI GATC 2 cut(s) 297, 339
BstMWI GCNNNNNNNGC 2 cut(s) 312, 355
BstNI CCWGG 2 cut(s) 423, 568
BstSCI CCNGG 2 cut(s) 421, 566
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 339
BstYI RGATCY 1 cut(s) 339
BsuI GTATCC 1 cut(s) 487
BtsIMutI CAGTG 1 cut(s) 243
Cfr13I GGNCC 2 cut(s) 47, 538
Csp6I GTAC 1 cut(s) 19
CviJI RGCY 6 cut(s) 43, 112, 306, 349, 381, 419
CviKI_1 RGCY 6 cut(s) 43, 112, 306, 349, 381, 419
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 3 cut(s) 68, 161, 343
DpnI GATC 2 cut(s) 299, 341
DpnII GATC 2 cut(s) 297, 339
DraIII CACNNNGTG 1 cut(s) 289
Ecl136II GAGCTC 1 cut(s) 349
Eco24I GRGCYC 1 cut(s) 351
Eco47I GGWCC 2 cut(s) 47, 538
Eco53kI GAGCTC 1 cut(s) 349
Eco88I CYCGRG 1 cut(s) 350
EcoICRI GAGCTC 1 cut(s) 349
EcoRII CCWGG 2 cut(s) 421, 566
EcoT38I GRGCYC 1 cut(s) 351
FaiI YATR 5 cut(s) 233, 269, 365, 369, 550
FalI AAGNNNNNCTT 2 cut(s) 483, 515
FaqI GGGAC 1 cut(s) 60
FriOI GRGCYC 1 cut(s) 351
FspBI CTAG 3 cut(s) 29, 188, 616
GsaI CCCAGC 1 cut(s) 47
GsuI CTGGAG 1 cut(s) 405
HincII GTYRAC 1 cut(s) 564
HindII GTYRAC 1 cut(s) 564
HinfI GANTC 4 cut(s) 64, 461, 510, 528
Hpy166II GTNNAC 1 cut(s) 564
Hpy188III TCNNGA 4 cut(s) 188, 309, 352, 601
Hpy8I GTNNAC 1 cut(s) 564
HpyAV CCTTC 4 cut(s) 193, 244, 485, 551
HpyCH4III ACNGT 2 cut(s) 238, 561
HpyCH4V TGCA 1 cut(s) 120
HpyF10VI GCNNNNNNNGC 2 cut(s) 312, 355
HpyF3I CTNAG 3 cut(s) 68, 161, 343
Kzo9I GATC 2 cut(s) 297, 339
LmnI GCTCC 2 cut(s) 408, 424
LpnPI CCDG 9 cut(s) 29, 63, 231, 397, 408, 435, 553, 580, 586
MaeI CTAG 3 cut(s) 29, 188, 616
MaeIII GTNAC 1 cut(s) 555
MalI GATC 2 cut(s) 299, 341
MboI GATC 2 cut(s) 297, 339
MboII GAAGA 4 cut(s) 208, 216, 266, 458
MflI RGATCY 1 cut(s) 339
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 3 cut(s) 103, 360, 401
MmeI TCCRAC 1 cut(s) 415
MnlI CCTC 1 cut(s) 234
MseI TTAA 1 cut(s) 455
MspR9I CCNGG 2 cut(s) 423, 568
Mva1269I GAATGC 2 cut(s) 61, 283
MvaI CCWGG 2 cut(s) 423, 568
MwoI GCNNNNNNNGC 2 cut(s) 312, 355
NdeII GATC 2 cut(s) 297, 339
NlaIV GGNNCC 2 cut(s) 48, 420
PaeR7I CTCGAG 1 cut(s) 350
PctI GAATGC 2 cut(s) 61, 283
PfeI GAWTC 4 cut(s) 64, 461, 510, 528
PflMI CCANNNNNTGG 1 cut(s) 289
PfoI TCCNGGA 1 cut(s) 421
Psp124BI GAGCTC 1 cut(s) 351
Psp6I CCWGG 2 cut(s) 421, 566
PspFI CCCAGC 1 cut(s) 43
PspGI CCWGG 2 cut(s) 421, 566
PspN4I GGNNCC 2 cut(s) 48, 420
PspPI GGNCC 2 cut(s) 47, 538
PsuI RGATCY 1 cut(s) 339
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SacI GAGCTC 1 cut(s) 351
SaqAI TTAA 1 cut(s) 455
Sau3AI GATC 2 cut(s) 297, 339
Sau96I GGNCC 2 cut(s) 47, 538
ScrFI CCNGG 2 cut(s) 423, 568
SduI GDGCHC 1 cut(s) 351
SetI ASST 9 cut(s) 45, 126, 214, 308, 351, 383, 496, 569, 594
Sfr274I CTCGAG 1 cut(s) 350
SinI GGWCC 2 cut(s) 47, 538
SlaI CTCGAG 1 cut(s) 350
SmlI CTYRAG 2 cut(s) 307, 350
SmoI CTYRAG 2 cut(s) 307, 350
Sse9I AATT 3 cut(s) 103, 360, 401
SspI AATATT 1 cut(s) 487
SspMI CTAG 3 cut(s) 29, 188, 616
SstI GAGCTC 1 cut(s) 351
StyD4I CCNGG 2 cut(s) 421, 566
TaaI ACNGT 2 cut(s) 238, 561
TaqI TCGA 3 cut(s) 351, 508, 526
TaqII GACCGA 1 cut(s) 586
TasI AATT 3 cut(s) 103, 360, 401
TatI WGTACW 1 cut(s) 18
TfiI GAWTC 4 cut(s) 64, 461, 510, 528
Tru1I TTAA 1 cut(s) 455
Tru9I TTAA 1 cut(s) 455
TscAI CASTG 1 cut(s) 243
TspDTI ATGAA 2 cut(s) 82, 209
TspGWI ACGGA 1 cut(s) 543
TspRI CASTG 1 cut(s) 243
Van91I CCANNNNNTGG 1 cut(s) 289
VpaK11BI GGWCC 2 cut(s) 47, 538
XapI RAATTY 1 cut(s) 401
XbaI TCTAGA 1 cut(s) 187
XhoI CTCGAG 1 cut(s) 350
XspI CTAG 3 cut(s) 29, 188, 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.