Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0017900

Physical Location & Seq

Genomic Coordinates Forward (+)

30713062 .. 30730109

Gene Structure 17048 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG270100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGGGTTGTATTCCAAAACATTAAGTGAGGGGGAGGCAAGAAAGCTTTTTCAGCAATTGATAGATGCAGTGGACTACTGTCACAATAAAGGTGTATATCATAGAGAACTAAAGGGTTTCAATTCGGGTTCTTTTGGATTGGGATCCACAAGAAGGTCGATGCTGGCTCTGAAATCTGACCCGCTAAAGCCTCAACTCGAGAACGCCAAGTTGGTCAGGAAACCGTCCCGAATTATCTTTCACCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009705 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0031090 GO:0033554 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0098588 GO:0098805 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

82

Amino Acids

9.34

Weight (kDa)

10.08

Isoelectric Point (pI)

32.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	5 - 41	4.1e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57565 AT5G57565 AT5G57565 AT5G57565 AT5G57565 AT5G57565
rosa_roxburghii	Rroxscaffold_1G00016000 Rroxscaffold_2G00113020 Rroxscaffold_3G00227160
rosa_rugosa	Rorug06G0073300
rosa_samantha	Rh3AG270100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	182
AclWI	GGATC	2 cut(s)	138, 151
AfiI	CCNNNNNNNGG	1 cut(s)	153
AgsI	TTSAA	1 cut(s)	121
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
AlwI	GGATC	2 cut(s)	138, 151
Ama87I	CYCGRG	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	233
AvaI	CYCGRG	1 cut(s)	197
BamHI	GGATCC	1 cut(s)	143
BmeT110I	CYCGRG	1 cut(s)	197
BmiI	GGNNCC	1 cut(s)	145
BmsI	GCATC	2 cut(s)	55, 150
BoxI	GACNNNNGTC	1 cut(s)	78
BsaBI	GATNNNNATC	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse8I	GATNNNNATC	1 cut(s)	142
BseJI	GATNNNNATC	1 cut(s)	142
BseLI	CCNNNNNNNGG	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	197
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	211
BsoBI	CYCGRG	1 cut(s)	197
Bsp143I	GATC	1 cut(s)	143
BspACI	CCGC	1 cut(s)	182
BspLI	GGNNCC	1 cut(s)	145
BspPI	GGATC	2 cut(s)	138, 151
BssMI	GATC	1 cut(s)	143
Bst4CI	ACNGT	2 cut(s)	80, 225
BstC8I	GCNNGC	1 cut(s)	165
BstKTI	GATC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	143
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstPAI	GACNNNNGTC	1 cut(s)	78
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	165
CviJI	RGCY	3 cut(s)	46, 167, 190
CviKI_1	RGCY	3 cut(s)	46, 167, 190
DpnI	GATC	1 cut(s)	145
DpnII	GATC	1 cut(s)	143
Eco88I	CYCGRG	1 cut(s)	197
FaiI	YATR	2 cut(s)	97, 102
FaqI	GGGAC	1 cut(s)	211
FauI	CCCGC	1 cut(s)	189
HindIII	AAGCTT	1 cut(s)	44
HphI	GGTGA	1 cut(s)	233
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	2 cut(s)	171, 178
Hpy188III	TCNNGA	3 cut(s)	199, 217, 228
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	147
HpyCH4III	ACNGT	2 cut(s)	80, 225
HpyCH4V	TGCA	1 cut(s)	68
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
Kzo9I	GATC	1 cut(s)	143
LpnPI	CCDG	2 cut(s)	149, 202
LweI	GCATC	2 cut(s)	55, 150
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	1 cut(s)	145
MboI	GATC	1 cut(s)	143
MfeI	CAATTG	1 cut(s)	56
MflI	RGATCY	1 cut(s)	143
MluCI	AATT	3 cut(s)	56, 121, 231
MnlI	CCTC	3 cut(s)	22, 28, 201
MseI	TTAA	1 cut(s)	23
MunI	CAATTG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	52
NdeII	GATC	1 cut(s)	143
NlaIV	GGNNCC	1 cut(s)	145
NmuCI	GTSAC	1 cut(s)	80
PaeR7I	CTCGAG	1 cut(s)	197
PshAI	GACNNNNGTC	1 cut(s)	78
PspN4I	GGNNCC	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	23
Sau3AI	GATC	1 cut(s)	143
SetI	ASST	3 cut(s)	48, 94, 158
SfaNI	GCATC	2 cut(s)	55, 150
Sfr274I	CTCGAG	1 cut(s)	197
SlaI	CTCGAG	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	3 cut(s)	56, 121, 231
SsiI	CCGC	1 cut(s)	182
TaaI	ACNGT	2 cut(s)	80, 225
TaqI	TCGA	2 cut(s)	158, 198
TasI	AATT	3 cut(s)	56, 121, 231
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TscAI	CASTG	1 cut(s)	75
TseFI	GTSAC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	80
TspRI	CASTG	1 cut(s)	75
XhoI	CTCGAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.