Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008466

Physical Location & Seq

Genomic Coordinates Forward (+)

39019361 .. 39023968

Gene Structure 4608 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00245940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCAAAGAGAGCTGAGTTGCCCTTTGATAGGCAACATTTTCTTATTTCTACTAGAGAAGACCATAAAGCGCCATTGATTGCGGAGTCTGCCCTTAGAATCACATGGGAGATGGTTGAAAGATGCCAGACTATGCCTGTCATCTTACCACGTTTACAGTTTATTAGATTAACTGCTGTCAGATTCCTGTGGTACTTTTTTAAAGTATTGCTTGTACAGTGCAAGAGAACAGAAATTACTCCTGCCAATCCAGATGATGAGGCCTTAGTTAGAGTATGTGGATCAATTAATGCTGCCAAATACATTGAATCGAAGCTTCGACAGTGGAGTGATGATGTAAACTTTTTGGAGATGAAACTTGCTGAAAATGATCCTAGCAAGCAGAGAAAAGATAAGAATACTGATTATAATTTTTTTGAGGAAGAAATACAAAGCTTGTCTGAGCTCGCTACTAACTGGTTGATGGAGATCATTTCTGTTCTTCTTCATCAGTTTGAAAATCTTTCATGGGAATATGTGCAAAAGATGAAACTCTATGAGCAACAGCTAGAAGACTTGGCTCCCGTGGAAATTTCAGCAGCTGTGGATTTAAATATATCTGTGGATTTTGTTGAACCACTAGACGCTTTGAGATGTCATCTTATTCTTCTAAGAATGACTCTCAATGCCACAGATTTTTTAGATCTGTGGAGAAGTCTAGCTGAGGGGCTTGACCATTTCATATCTTGCAGTGATATCACATGTGGCATTCAATTTTTCGATGGAGGGATCAATCAGTTTGAAACAGATATGCAAGCATTGTTCTCAGTTTTTCAGCCTTTCTGTGTTCGGCCAGAAGCATTTTTCCCTTCTACTAGAGAGATTATGAAGCTGTTGAAAATGAAGAATAGAAAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005798 GO:0012505 GO:0030133 GO:0030134 GO:0030135 GO:0030137 GO:0030142 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINT1_TIP1

Protein Analysis

299

Amino Acids

35.08

Weight (kDa)

5.23

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINT1_TIP1	PF04437	88 - 297	9e-25	RINT-1/TIP-1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08400
fragaria_vesca	FvH4_5g23970 FvH4_5g23970 FvH4_5g23970 FvH4_5g23970 FvH4_5g23970 FvH4_5g23970 FvH4_5g23970
malus_domestica	MD06G1015400.v1.1
prunus_persica	Prupe.5G020200_v2.0.a1
pyrus_communis	pycom06g01240
rosa_chinensis	RchiOBHm_Chr7g0213411
rosa_laevigata	RLG00000002807
rosa_multiflora	Rmu_sc0003740.1_g000016 Rmu_ssc0000262.1_g000013
rosa_roxburghii	Rroxscaffold_3G00245940
rosa_rugosa	Rorug07G0142100 Rorug07G0142100
rosa_samantha	Rh7AG274000 Rh7BG269200 Rh7CG293100 Rh7DG281400
rosa_wichuraiana	Rw7G023760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	408
AciI	CCGC	1 cut(s)	83
AclWI	GGATC	3 cut(s)	289, 365, 776
AcoI	YGGCCR	1 cut(s)	830
AcsI	RAATTY	1 cut(s)	570
AfaI	GTAC	2 cut(s)	194, 216
AfiI	CCNNNNNNNGG	1 cut(s)	30
AflIII	ACRYGT	1 cut(s)	740
AgsI	TTSAA	7 cut(s)	119, 308, 497, 614, 752, 782, 877
AluBI	AGCT	8 cut(s)	14, 316, 435, 445, 547, 581, 701, 871
AluI	AGCT	8 cut(s)	14, 316, 435, 445, 547, 581, 701, 871
Alw21I	GWGCWC	1 cut(s)	447
AlwI	GGATC	3 cut(s)	289, 365, 776
AlwNI	CAGNNNCTG	1 cut(s)	581
AoxI	GGCC	2 cut(s)	261, 830
ApeKI	GCWGC	2 cut(s)	293, 578
ApoI	RAATTY	1 cut(s)	570
AseI	ATTAAT	1 cut(s)	288
AspLEI	GCGC	1 cut(s)	73
BanII	GRGCYC	1 cut(s)	447
BbsI	GAAGAC	2 cut(s)	66, 558
Bbv12I	GWGCWC	1 cut(s)	447
BbvCI	CCTCAGC	1 cut(s)	702
BbvI	GCAGC	2 cut(s)	280, 590
BccI	CCATC	3 cut(s)	106, 457, 755
BfaI	CTAG	6 cut(s)	54, 375, 548, 620, 698, 855
BfoI	RGCGCY	1 cut(s)	74
BglII	AGATCT	1 cut(s)	682
BisI	GCNGC	2 cut(s)	294, 579
BlsI	GCNGC	2 cut(s)	295, 580
BmiI	GGNNCC	1 cut(s)	561
BmsI	GCATC	1 cut(s)	113
BpiI	GAAGAC	2 cut(s)	66, 558
Bpu10I	CCTNAGC	1 cut(s)	702
BsaBI	GATNNNNATC	1 cut(s)	467
BsaJI	CCNNGG	1 cut(s)	564
Bsc4I	CCNNNNNNNGG	1 cut(s)	30
Bse1I	ACTGG	1 cut(s)	461
Bse8I	GATNNNNATC	1 cut(s)	467
BseDI	CCNNGG	1 cut(s)	564
BseJI	GATNNNNATC	1 cut(s)	467
BseLI	CCNNNNNNNGG	1 cut(s)	30
BseMII	CTCAG	4 cut(s)	6, 432, 693, 819
BseNI	ACTGG	1 cut(s)	461
BseXI	GCAGC	2 cut(s)	280, 590
BshFI	GGCC	2 cut(s)	263, 832
BsiHKAI	GWGCWC	1 cut(s)	447
BslI	CCNNNNNNNGG	1 cut(s)	30
BsmI	GAATGC	1 cut(s)	747
BsnI	GGCC	2 cut(s)	263, 832
Bsp1286I	GDGCHC	1 cut(s)	447
Bsp1407I	TGTACA	1 cut(s)	214
Bsp143I	GATC	5 cut(s)	281, 370, 468, 682, 768
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	2 cut(s)	263, 832
BspCNI	CTCAG	4 cut(s)	7, 433, 694, 818
BspLI	GGNNCC	1 cut(s)	561
BspPI	GGATC	3 cut(s)	289, 365, 776
BsrGI	TGTACA	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	461
BssECI	CCNNGG	1 cut(s)	564
BssMI	GATC	5 cut(s)	281, 370, 468, 682, 768
Bst4CI	ACNGT	3 cut(s)	159, 219, 324
BstAUI	TGTACA	1 cut(s)	214
BstC8I	GCNNGC	3 cut(s)	380, 447, 795
BstDEI	CTNAG	7 cut(s)	15, 95, 265, 441, 650, 702, 805
BstDSI	CCRYGG	1 cut(s)	564
BstENI	CCTNNNNNAGG	1 cut(s)	28
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	5 cut(s)	284, 373, 471, 685, 771
BstMBI	GATC	5 cut(s)	281, 370, 468, 682, 768
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 89
BstNSI	RCATGY	1 cut(s)	744
BstV1I	GCAGC	2 cut(s)	280, 590
BstV2I	GAAGAC	2 cut(s)	66, 558
BstX2I	RGATCY	1 cut(s)	682
BstYI	RGATCY	1 cut(s)	682
BsuRI	GGCC	2 cut(s)	263, 832
BtgI	CCRYGG	1 cut(s)	564
BtsI	GCAGTG	1 cut(s)	736
BtsIMutI	CAGTG	3 cut(s)	224, 329, 736
Cac8I	GCNNGC	3 cut(s)	380, 447, 795
CaiI	CAGNNNCTG	1 cut(s)	581
CfoI	GCGC	1 cut(s)	73
CseI	GACGC	1 cut(s)	632
Csp6I	GTAC	2 cut(s)	193, 215
CviAII	CATG	3 cut(s)	105, 507, 741
CviQI	GTAC	2 cut(s)	193, 215
DdeI	CTNAG	7 cut(s)	15, 95, 265, 441, 650, 702, 805
DpnI	GATC	5 cut(s)	283, 372, 470, 684, 770
DpnII	GATC	5 cut(s)	281, 370, 468, 682, 768
DraI	TTTAAA	2 cut(s)	202, 591
EaeI	YGGCCR	1 cut(s)	830
Ecl136II	GAGCTC	1 cut(s)	445
Eco147I	AGGCCT	1 cut(s)	263
Eco24I	GRGCYC	1 cut(s)	447
Eco32I	GATATC	1 cut(s)	736
Eco53kI	GAGCTC	1 cut(s)	445
EcoICRI	GAGCTC	1 cut(s)	445
EcoNI	CCTNNNNNAGG	1 cut(s)	28
EcoRV	GATATC	1 cut(s)	736
EcoT38I	GRGCYC	1 cut(s)	447
FaeI	CATG	3 cut(s)	108, 510, 744
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FatI	CATG	3 cut(s)	104, 506, 740
Fnu4HI	GCNGC	2 cut(s)	294, 579
FriOI	GRGCYC	1 cut(s)	447
Fsp4HI	GCNGC	2 cut(s)	294, 579
FspBI	CTAG	6 cut(s)	54, 375, 548, 620, 698, 855
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	2 cut(s)	294, 579
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	2 cut(s)	263, 832
HgaI	GACGC	1 cut(s)	632
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	3 cut(s)	108, 510, 744
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HindIII	AAGCTT	2 cut(s)	314, 433
HinfI	GANTC	5 cut(s)	86, 99, 183, 308, 658
Hpy166II	GTNNAC	2 cut(s)	155, 340
Hpy188I	TCNGA	2 cut(s)	182, 442
Hpy188III	TCNNGA	1 cut(s)	251
Hpy8I	GTNNAC	2 cut(s)	155, 340
HpyAV	CCTTC	1 cut(s)	858
HpyCH4III	ACNGT	3 cut(s)	159, 219, 324
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	4 cut(s)	222, 520, 729, 793
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 89
HpyF3I	CTNAG	7 cut(s)	15, 95, 265, 441, 650, 702, 805
HpySE526I	ACGT	1 cut(s)	151
Hsp92II	CATG	3 cut(s)	108, 510, 744
HspAI	GCGC	1 cut(s)	71
Kzo9I	GATC	5 cut(s)	281, 370, 468, 682, 768
LmnI	GCTCC	1 cut(s)	565
LpnPI	CCDG	7 cut(s)	140, 150, 200, 255, 264, 442, 846
Lsp1109I	GCAGC	2 cut(s)	280, 590
LweI	GCATC	1 cut(s)	113
MaeI	CTAG	6 cut(s)	54, 375, 548, 620, 698, 855
MaeII	ACGT	1 cut(s)	151
MalI	GATC	5 cut(s)	283, 372, 470, 684, 770
MboI	GATC	5 cut(s)	281, 370, 468, 682, 768
MboII	GAAGA	7 cut(s)	71, 434, 473, 476, 563, 638, 895
MflI	RGATCY	1 cut(s)	682
MhlI	GDGCHC	1 cut(s)	447
MluCI	AATT	5 cut(s)	234, 285, 409, 570, 752
MlyI	GAGTC	2 cut(s)	95, 652
MnlI	CCTC	4 cut(s)	253, 412, 697, 758
MseI	TTAA	4 cut(s)	170, 201, 288, 590
MspA1I	CMGCKG	1 cut(s)	581
Mva1269I	GAATGC	1 cut(s)	747
MwoI	GCNNNNNNNGC	2 cut(s)	11, 89
NdeII	GATC	5 cut(s)	281, 370, 468, 682, 768
NlaIII	CATG	3 cut(s)	108, 510, 744
NlaIV	GGNNCC	1 cut(s)	561
NspI	RCATGY	1 cut(s)	744
PceI	AGGCCT	1 cut(s)	263
PciI	ACATGT	1 cut(s)	740
PctI	GAATGC	1 cut(s)	747
PfeI	GAWTC	3 cut(s)	99, 183, 308
PkrI	GCNGC	2 cut(s)	295, 580
PleI	GAGTC	2 cut(s)	94, 652
PpsI	GAGTC	2 cut(s)	94, 652
PscI	ACATGT	1 cut(s)	740
PshBI	ATTAAT	1 cut(s)	288
PsiI	TTATAA	1 cut(s)	408
Psp124BI	GAGCTC	1 cut(s)	447
PspN4I	GGNNCC	1 cut(s)	561
PsrI	GAACNNNNNNTAC	2 cut(s)	220, 252
PstNI	CAGNNNCTG	1 cut(s)	581
PsuI	RGATCY	1 cut(s)	682
PvuII	CAGCTG	1 cut(s)	581
RsaI	GTAC	2 cut(s)	194, 216
RsaNI	GTAC	2 cut(s)	193, 215
SacI	GAGCTC	1 cut(s)	447
SaqAI	TTAA	4 cut(s)	170, 201, 288, 590
SatI	GCNGC	2 cut(s)	294, 579
Sau3AI	GATC	5 cut(s)	281, 370, 468, 682, 768
SchI	GAGTC	2 cut(s)	95, 652
SduI	GDGCHC	1 cut(s)	447
SfaNI	GCATC	1 cut(s)	113
SmiI	ATTTAAAT	1 cut(s)	591
Sse9I	AATT	5 cut(s)	234, 285, 409, 570, 752
SseBI	AGGCCT	1 cut(s)	263
SsiI	CCGC	1 cut(s)	83
SspMI	CTAG	6 cut(s)	54, 375, 548, 620, 698, 855
SstI	GAGCTC	1 cut(s)	447
StuI	AGGCCT	1 cut(s)	263
SwaI	ATTTAAAT	1 cut(s)	591
TaaI	ACNGT	3 cut(s)	159, 219, 324
TaiI	ACGT	1 cut(s)	154
TaqI	TCGA	3 cut(s)	311, 319, 759
TasI	AATT	5 cut(s)	234, 285, 409, 570, 752
TatI	WGTACW	1 cut(s)	214
TfiI	GAWTC	3 cut(s)	99, 183, 308
Tru1I	TTAA	4 cut(s)	170, 201, 288, 590
Tru9I	TTAA	4 cut(s)	170, 201, 288, 590
TscAI	CASTG	3 cut(s)	224, 329, 736
TseI	GCWGC	2 cut(s)	293, 578
TspDTI	ATGAA	7 cut(s)	368, 476, 495, 542, 709, 881, 896
TspRI	CASTG	3 cut(s)	224, 329, 736
VspI	ATTAAT	1 cut(s)	288
XagI	CCTNNNNNAGG	1 cut(s)	28
XapI	RAATTY	1 cut(s)	570
XceI	RCATGY	1 cut(s)	744
XspI	CTAG	6 cut(s)	54, 375, 548, 620, 698, 855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.