Rh7CG293100

RINT-1 / TIP-1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0008466
Physical Location & Seq
Reverse (-)
29940394 .. 29944993
4600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG293100.1

Sequence Viewer

Length: 1866 bp
ATGCAGAACTCTGGAACAAAGCAGGAAAAGTTGCTTCAGGCCATAAAAGCTTTGAATGATTTGGAAGTGTTGGTTGGCCTTGTGAAACCTCGACCACAGTGGCATCATCTTCTGAAATCTGTTGATGCTAGGGTGGACAAAACTTTGGCTGTTCTTCGTCCACAAGTCTTTGCAGATCACCGAGCATTTCTCACTTCTCTTGGATGGCCACCAAAACTTTCGACATTAAAAATAGAAAGTGAGCTCTCAGGCCTTTCAAATCCATTAATCTCAATGCAAGGAGAAAAAAGGAGGAGTTATTCAGATAGCTTTTTAGCTCTTTGTGCTTTACAGCATATACAAACAAGGAGGGAAAACCGACAACTCAACCTCTCAGGACAAAAGGAGTGCATAATACAGCTTTGGGCCATTGATGAATTGGTGTCTCCTATTGCATCACGCATGGAATACCATTTCTCAAAGTGGGTTGATCAACCTGAGTTTATATTTGAGCTTGCCTACAAAATCACAAGGGATTTTATTGTAGGCGTGGATGATGTCTTGCAGCCTCTGATTGATAGAGCAAGATTGATAAGCTACAGTGCCAAAGAAGCTTGGGTTTCTTCCATGGTACAACTGCTTTCTGAATTTTTGGCAAAAAGAATTTTCTCTTCTCTTGCCGAAAAATACCAGGAGGAGAAACAGATGAAATCCGAAGTTATATTGTCATGGCTTCATCTCATTGACCTTATTGTTTTATTTGATAAACGGATTCAGTCACTTCTAAGTTCTGAAACCAGTCTGTTTTCAACAGAATTAGAAAGGGTGGAGAGTCTCTCCGGGAACACTTCAGTGTTGATGATATTTGGTAATAGACCAGACTGGCTAAAGATTTGGGCAAAGATAGAGCTCAAGAATGCCTGCAATAAACTTAAAACAGATTTGAAAGATGAAAGAGCTTGGACAGTAGATGGCAAAGAGGGAGCTGAGTTGCCCTTTGATATGCAACATTTTCTTATTTCTACAAGAGAAGACCATAAAGCCCCATTGATTGCAGAGTCTGCCCTTAGAATCACATGGGAGATGGTTGAAAGATGCCAGACTATGCCTGTCATCTTACCACGTTTACAGTTTATTAGATTAACTGCTGTCAGATTCCTGTGGTACTTTTTTAAAGTATTGCTTGTACATTGCAAGAGAACAGAAATTACTCCTGACAATCCAGATGATGAGGCCTTAGTTAGAGTATGTGGATCAATTAATGCTGCCAAATACATTGAATTGAAGCTTCGACAGTGGAGTGATGATGTAAATTTTTTGGAGATGAAACTAGCTGAAAATGATCCTAGCAACCGGAGAAAAGATAAGAATAGTGATTATAATTTTTTCGGGGAAGAAATACAAAGCTTGTCTGAGCTCACTACTAACTGGTTGATGGAGATCATTTCTGTTCTTCTTCGTCAGTTTGAAAGTCTTTCATGGGAATATGTGCAAAAGATGAAACTCTATGAGCAACAGCTAGAAGACTTGGCTCCTGTGGAAATATCAGCAGCTGTGGATTTGAATATATCTGTGGATTTTGTTGAACCACTAGACGCTTTGAGATGTCATCTTATTCTTCTAAGAATGACTCTCAATGCCACAGATTTTTTAGATCTGTGGAGAAGTCTAGCTGAGGGGCTTGACCATTTCATATCTTGCAGTGATATCACATGTGGCATTCAATTTTTCGATGGAGGGATCAATCAGTTTGAAACAGATATGCAAGCATTGTTCTCAGTTTTTCAGCCTTTCTGTGTTCGGCCCGAAGCATTTTTCCCTTCTACTAGAGAGATTATGAAGCTGTTGAAAATGAAGAATAGAAAAAGGCGAAGCATTTGCAGGTAA

Protein Analysis

621

Amino Acids

72.09

Weight (kDa)

6.0

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RINT1_TIP1 PF04437 135 - 614 2.9e-32 RINT-1/TIP-1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1359
Acc36I ACCTGC 1 cut(s) 1851
AclWI GGATC 3 cut(s) 1240, 1316, 1727
AcoI YGGCCR 1 cut(s) 206
AcsI RAATTY 3 cut(s) 626, 642, 1291
AcuI CTGAAG 2 cut(s) 20, 813
AfaI GTAC 3 cut(s) 612, 1145, 1167
AflIII ACRYGT 1 cut(s) 1691
AjnI CCWGG 1 cut(s) 669
AjuI GAANNNNNNNTTGG 2 cut(s) 57, 89
AleI CACNNNNGTG 1 cut(s) 830
Alw21I GWGCWC 3 cut(s) 246, 891, 1398
Alw26I GTCTC 2 cut(s) 429, 818
AlwI GGATC 3 cut(s) 1240, 1316, 1727
AlwNI CAGNNNCTG 3 cut(s) 550, 1040, 1532
AoxI GGCC 7 cut(s) 39, 76, 206, 250, 405, 1212, 1781
ApeKI GCWGC 3 cut(s) 544, 1244, 1529
ApoI RAATTY 3 cut(s) 626, 642, 1291
AseI ATTAAT 2 cut(s) 266, 1239
AspS9I GGNCC 2 cut(s) 405, 1782
AsuC2I CCSGG 1 cut(s) 820
AsuHPI GGTGA 1 cut(s) 170
BalI TGGCCA 1 cut(s) 208
BanII GRGCYC 3 cut(s) 246, 891, 1398
BbsI GAAGAC 2 cut(s) 1017, 1509
Bbv12I GWGCWC 3 cut(s) 246, 891, 1398
BbvCI CCTCAGC 1 cut(s) 1653
BbvI GCAGC 3 cut(s) 556, 1231, 1541
BccI CCATC 5 cut(s) 198, 944, 1057, 1408, 1706
BcgI CGANNNNNNTGC 1 cut(s) 1839
BciT130I CCWGG 1 cut(s) 671
BclI TGATCA 1 cut(s) 469
BcnI CCSGG 1 cut(s) 820
BcoDI GTCTC 2 cut(s) 429, 818
BfaI CTAG 7 cut(s) 129, 1310, 1326, 1499, 1571, 1649, 1806
BfmI CTRYAG 1 cut(s) 577
BfuAI ACCTGC 1 cut(s) 1851
BglII AGATCT 1 cut(s) 1633
BisI GCNGC 3 cut(s) 545, 1245, 1530
BlsI GCNGC 3 cut(s) 546, 1246, 1531
Bme1390I CCNGG 2 cut(s) 671, 820
BmgT120I GGNCC 2 cut(s) 405, 1782
BmiI GGNNCC 1 cut(s) 1512
BmrFI CCNGG 2 cut(s) 671, 820
BmsI GCATC 4 cut(s) 112, 115, 443, 1064
BpiI GAAGAC 2 cut(s) 1017, 1509
BplI GAGNNNNNCTC 4 cut(s) 174, 206, 800, 832
Bpu10I CCTNAGC 1 cut(s) 1653
BpuEI CTTGAG 1 cut(s) 875
BpuMI CCSGG 1 cut(s) 820
BsaBI GATNNNNATC 1 cut(s) 1418
BsaJI CCNNGG 1 cut(s) 606
BsaWI WCCGGW 1 cut(s) 1332
Bse1I ACTGG 3 cut(s) 777, 866, 1412
Bse3DI GCAATG 1 cut(s) 1168
Bse8I GATNNNNATC 1 cut(s) 1418
BseBI CCWGG 1 cut(s) 671
BseDI CCNNGG 1 cut(s) 606
BseGI GGATG 2 cut(s) 209, 538
BseJI GATNNNNATC 1 cut(s) 1418
BseMI GCAATG 1 cut(s) 1168
BseMII CTCAG 7 cut(s) 261, 387, 468, 957, 1383, 1644, 1770
BseNI ACTGG 3 cut(s) 777, 866, 1412
BseRI GAGGAG 2 cut(s) 307, 689
BseXI GCAGC 3 cut(s) 556, 1231, 1541
BshFI GGCC 7 cut(s) 41, 78, 208, 252, 407, 1214, 1783
BsiHKAI GWGCWC 3 cut(s) 246, 891, 1398
BsiSI CCGG 2 cut(s) 819, 1333
BsmAI GTCTC 2 cut(s) 429, 818
BsmI GAATGC 2 cut(s) 901, 1698
BsnI GGCC 7 cut(s) 41, 78, 208, 252, 407, 1214, 1783
Bsp1286I GDGCHC 3 cut(s) 246, 891, 1398
Bsp1407I TGTACA 1 cut(s) 1165
Bsp143I GATC 7 cut(s) 175, 469, 1232, 1321, 1419, 1633, 1719
Bsp19I CCATGG 1 cut(s) 606
BspANI GGCC 7 cut(s) 41, 78, 208, 252, 407, 1214, 1783
BspCNI CTCAG 7 cut(s) 260, 386, 469, 958, 1384, 1645, 1769
BspLI GGNNCC 1 cut(s) 1512
BspMI ACCTGC 1 cut(s) 1851
BspPI GGATC 3 cut(s) 1240, 1316, 1727
BsrDI GCAATG 1 cut(s) 1168
BsrGI TGTACA 1 cut(s) 1165
BsrI ACTGG 3 cut(s) 777, 866, 1412
BssECI CCNNGG 1 cut(s) 606
BssMI GATC 7 cut(s) 175, 469, 1232, 1321, 1419, 1633, 1719
BssT1I CCWWGG 1 cut(s) 606
Bst2UI CCWGG 1 cut(s) 671
Bst4CI ACNGT 5 cut(s) 99, 581, 946, 1110, 1275
Bst6I CTCTTC 1 cut(s) 655
BstAPI GCANNNNNTGC 1 cut(s) 1040
BstAUI TGTACA 1 cut(s) 1165
BstC8I GCNNGC 3 cut(s) 495, 901, 1746
BstDSI CCRYGG 1 cut(s) 606
BstF5I GGATG 2 cut(s) 209, 538
BstKTI GATC 7 cut(s) 178, 472, 1235, 1324, 1422, 1636, 1722
BstMAI GTCTC 2 cut(s) 429, 818
BstMBI GATC 7 cut(s) 175, 469, 1232, 1321, 1419, 1633, 1719
BstMWI GCNNNNNNNGC 4 cut(s) 47, 323, 590, 1040
BstNI CCWGG 1 cut(s) 671
BstNSI RCATGY 1 cut(s) 1695
BstSCI CCNGG 2 cut(s) 669, 818
BstSFI CTRYAG 1 cut(s) 577
BstV1I GCAGC 3 cut(s) 556, 1231, 1541
BstV2I GAAGAC 2 cut(s) 1017, 1509
BstX2I RGATCY 1 cut(s) 1633
BstYI RGATCY 1 cut(s) 1633
BsuRI GGCC 7 cut(s) 41, 78, 208, 252, 407, 1214, 1783
BtgI CCRYGG 1 cut(s) 606
BtsCI GGATG 2 cut(s) 209, 538
BtsI GCAGTG 1 cut(s) 1687
BtsIMutI CAGTG 5 cut(s) 104, 586, 837, 1280, 1687
BveI ACCTGC 1 cut(s) 1851
Cac8I GCNNGC 3 cut(s) 495, 901, 1746
CaiI CAGNNNCTG 3 cut(s) 550, 1040, 1532
Cfr13I GGNCC 2 cut(s) 405, 1782
CseI GACGC 1 cut(s) 1583
Csp6I GTAC 3 cut(s) 611, 1144, 1166
CviAII CATG 6 cut(s) 442, 607, 708, 1056, 1458, 1692
CviQI GTAC 3 cut(s) 611, 1144, 1166
DpnI GATC 7 cut(s) 177, 471, 1234, 1323, 1421, 1635, 1721
DpnII GATC 7 cut(s) 175, 469, 1232, 1321, 1419, 1633, 1719
DraI TTTAAA 1 cut(s) 1153
EaeI YGGCCR 1 cut(s) 206
Eam1104I CTCTTC 1 cut(s) 655
EarI CTCTTC 1 cut(s) 655
Ecl136II GAGCTC 3 cut(s) 244, 889, 1396
Eco130I CCWWGG 1 cut(s) 606
Eco147I AGGCCT 2 cut(s) 252, 1214
Eco24I GRGCYC 3 cut(s) 246, 891, 1398
Eco32I GATATC 1 cut(s) 1687
Eco53kI GAGCTC 3 cut(s) 244, 889, 1396
Eco57I CTGAAG 2 cut(s) 20, 813
EcoICRI GAGCTC 3 cut(s) 244, 889, 1396
EcoRII CCWGG 1 cut(s) 669
EcoRV GATATC 1 cut(s) 1687
EcoT14I CCWWGG 1 cut(s) 606
EcoT38I GRGCYC 3 cut(s) 246, 891, 1398
ErhI CCWWGG 1 cut(s) 606
FaeI CATG 6 cut(s) 445, 610, 711, 1059, 1461, 1695
FalI AAGNNNNNCTT 2 cut(s) 1146, 1178
FatI CATG 6 cut(s) 441, 606, 707, 1055, 1457, 1691
FbaI TGATCA 1 cut(s) 469
Fnu4HI GCNGC 3 cut(s) 545, 1245, 1530
FokI GGATG 2 cut(s) 216, 545
FriOI GRGCYC 3 cut(s) 246, 891, 1398
Fsp4HI GCNGC 3 cut(s) 545, 1245, 1530
FspBI CTAG 7 cut(s) 129, 1310, 1326, 1499, 1571, 1649, 1806
GluI GCNGC 3 cut(s) 545, 1245, 1530
HaeIII GGCC 7 cut(s) 41, 78, 208, 252, 407, 1214, 1783
HapII CCGG 2 cut(s) 819, 1333
HgaI GACGC 1 cut(s) 1583
Hin1II CATG 6 cut(s) 445, 610, 711, 1059, 1461, 1695
HindIII AAGCTT 4 cut(s) 48, 591, 1265, 1384
HinfI GANTC 6 cut(s) 751, 811, 1037, 1050, 1134, 1609
HpaII CCGG 2 cut(s) 819, 1333
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 3 cut(s) 136, 161, 1106
Hpy188I TCNGA 8 cut(s) 114, 304, 552, 625, 694, 772, 1133, 1393
Hpy188III TCNNGA 5 cut(s) 12, 375, 892, 1193, 1202
Hpy8I GTNNAC 3 cut(s) 136, 161, 1106
HpyAV CCTTC 1 cut(s) 1809
HpyCH4III ACNGT 5 cut(s) 99, 581, 946, 1110, 1275
HpyCH4IV ACGT 1 cut(s) 1102
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 323, 590, 1040
HpySE526I ACGT 1 cut(s) 1102
Hsp92II CATG 6 cut(s) 445, 610, 711, 1059, 1461, 1695
Ksp22I TGATCA 1 cut(s) 469
Kzo9I GATC 7 cut(s) 175, 469, 1232, 1321, 1419, 1633, 1719
LmnI GCTCC 2 cut(s) 962, 1516
Lsp1109I GCAGC 3 cut(s) 556, 1231, 1541
LweI GCATC 4 cut(s) 112, 115, 443, 1064
MaeI CTAG 7 cut(s) 129, 1310, 1326, 1499, 1571, 1649, 1806
MaeII ACGT 1 cut(s) 1102
MaeIII GTNAC 1 cut(s) 756
MalI GATC 7 cut(s) 177, 471, 1234, 1323, 1421, 1635, 1721
MboI GATC 7 cut(s) 175, 469, 1232, 1321, 1419, 1633, 1719
MflI RGATCY 1 cut(s) 1633
MhlI GDGCHC 3 cut(s) 246, 891, 1398
MlsI TGGCCA 1 cut(s) 208
MluNI TGGCCA 1 cut(s) 208
MlyI GAGTC 3 cut(s) 820, 1046, 1603
Mox20I TGGCCA 1 cut(s) 208
MscI TGGCCA 1 cut(s) 208
MseI TTAA 6 cut(s) 227, 266, 912, 1121, 1152, 1239
MslI CAYNNNNRTG 1 cut(s) 830
Msp20I TGGCCA 1 cut(s) 208
MspA1I CMGCKG 1 cut(s) 1532
MspI CCGG 2 cut(s) 819, 1333
MspR9I CCNGG 2 cut(s) 671, 820
Mva1269I GAATGC 2 cut(s) 901, 1698
MvaI CCWGG 1 cut(s) 671
MwoI GCNNNNNNNGC 4 cut(s) 47, 323, 590, 1040
NciI CCSGG 1 cut(s) 820
NcoI CCATGG 1 cut(s) 606
NdeII GATC 7 cut(s) 175, 469, 1232, 1321, 1419, 1633, 1719
NlaIII CATG 6 cut(s) 445, 610, 711, 1059, 1461, 1695
NlaIV GGNNCC 1 cut(s) 1512
NmuCI GTSAC 1 cut(s) 756
NspI RCATGY 1 cut(s) 1695
OliI CACNNNNGTG 1 cut(s) 830
PceI AGGCCT 2 cut(s) 252, 1214
PciI ACATGT 1 cut(s) 1691
PctI GAATGC 2 cut(s) 901, 1698
PfeI GAWTC 3 cut(s) 751, 1050, 1134
PfoI TCCNGGA 1 cut(s) 818
PkrI GCNGC 3 cut(s) 546, 1246, 1531
PleI GAGTC 3 cut(s) 819, 1045, 1603
PpsI GAGTC 3 cut(s) 819, 1045, 1603
PscI ACATGT 1 cut(s) 1691
PshBI ATTAAT 2 cut(s) 266, 1239
PsiI TTATAA 1 cut(s) 1359
Psp124BI GAGCTC 3 cut(s) 246, 891, 1398
Psp6I CCWGG 1 cut(s) 669
PspGI CCWGG 1 cut(s) 669
PspN4I GGNNCC 1 cut(s) 1512
PspPI GGNCC 2 cut(s) 405, 1782
PsrI GAACNNNNNNTAC 2 cut(s) 1171, 1203
PstNI CAGNNNCTG 3 cut(s) 550, 1040, 1532
PsuI RGATCY 1 cut(s) 1633
PvuII CAGCTG 1 cut(s) 1532
RsaI GTAC 3 cut(s) 612, 1145, 1167
RsaNI GTAC 3 cut(s) 611, 1144, 1166
RseI CAYNNNNRTG 1 cut(s) 830
SacI GAGCTC 3 cut(s) 246, 891, 1398
SaqAI TTAA 6 cut(s) 227, 266, 912, 1121, 1152, 1239
SatI GCNGC 3 cut(s) 545, 1245, 1530
Sau3AI GATC 7 cut(s) 175, 469, 1232, 1321, 1419, 1633, 1719
Sau96I GGNCC 2 cut(s) 405, 1782
SchI GAGTC 3 cut(s) 820, 1046, 1603
ScrFI CCNGG 2 cut(s) 671, 820
SduI GDGCHC 3 cut(s) 246, 891, 1398
SfaNI GCATC 4 cut(s) 112, 115, 443, 1064
SfcI CTRYAG 1 cut(s) 577
SmiMI CAYNNNNRTG 1 cut(s) 830
SmlI CTYRAG 1 cut(s) 890
SmoI CTYRAG 1 cut(s) 890
SseBI AGGCCT 2 cut(s) 252, 1214
SspMI CTAG 7 cut(s) 129, 1310, 1326, 1499, 1571, 1649, 1806
SstI GAGCTC 3 cut(s) 246, 891, 1398
StuI AGGCCT 2 cut(s) 252, 1214
StyD4I CCNGG 2 cut(s) 669, 818
StyI CCWWGG 1 cut(s) 606
TaaI ACNGT 5 cut(s) 99, 581, 946, 1110, 1275
TaiI ACGT 1 cut(s) 1105
TaqI TCGA 4 cut(s) 91, 221, 1270, 1710
TatI WGTACW 1 cut(s) 1165
TfiI GAWTC 3 cut(s) 751, 1050, 1134
Tru1I TTAA 6 cut(s) 227, 266, 912, 1121, 1152, 1239
Tru9I TTAA 6 cut(s) 227, 266, 912, 1121, 1152, 1239
TscAI CASTG 5 cut(s) 104, 586, 837, 1280, 1687
TseFI GTSAC 1 cut(s) 756
TseI GCWGC 3 cut(s) 544, 1244, 1529
Tsp45I GTSAC 1 cut(s) 756
TspGWI ACGGA 1 cut(s) 763
TspRI CASTG 5 cut(s) 104, 586, 837, 1280, 1687
VspI ATTAAT 2 cut(s) 266, 1239
XapI RAATTY 3 cut(s) 626, 642, 1291
XceI RCATGY 1 cut(s) 1695
XcmI CCANNNNNNNNNTGG 1 cut(s) 415
XspI CTAG 7 cut(s) 129, 1310, 1326, 1499, 1571, 1649, 1806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.