Rroxscaffold_3G00246650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0023205
Physical Location & Seq
Reverse (-)
39833240 .. 39845998
12759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00246650.1

Sequence Viewer

Length: 564 bp
ATGGAGAAGCTGCTTCATCTCCTCAATTCTTGCTCAAGTGGTAGAAAAGGAGGAAGTGAAAAGAGTGACAAAAGACTCGATCACTCATTAGAAATGGTAGTTGATTTTATAAGGCTCGATGATTTCACCACCTCAATGTCAAATGATCTCTTGGAGCTACAATGTGCACTTTCTTGTTTACCGGTGTGTGATCATCGGTCTCTCACCTCTCTCTACGAAGTAACTCTATCTCCTCTCCTCAGCACTCTGCTCTCATTCTCTCAAACCTTATTCAGGACGAGGTACCGACTCATTGCTCGACGAGGATCCTTACGCTTGGATACCACGTTAGCCCAAACAAAGCGCAAACAAGGATCAGATGAATTTTCACAAAAGAATGTGAAAACCCATTGTCTCCAAAACGAAAACAAGGATGTAGATCAAAGAACAGAGAATGGGATAGAGGGGATGAAATACAATAGAGAGATAGATTTTACGGCCAATCGTTTCAAAACTGGTGCGGCTGCTTTCCCAGTCGATTCAAATCTGACATACCCAATTGGAGCCCATCTTCAGGTCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

21.18

Weight (kDa)

8.28

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023205)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_2G00116860 Rroxscaffold_3G00246650
rosa_rugosa Rorug01G0078100
rosa_samantha Rh7CG285400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 110
Acc65I GGTACC 1 cut(s) 282
AccB1I GGYRCC 1 cut(s) 282
AciI CCGC 1 cut(s) 500
AclWI GGATC 3 cut(s) 300, 313, 361
AcoI YGGCCR 1 cut(s) 477
AcsI RAATTY 1 cut(s) 362
AcuI CTGAAG 1 cut(s) 536
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 2 cut(s) 273, 553
AgeI ACCGGT 1 cut(s) 181
AgsI TTSAA 2 cut(s) 490, 522
AluBI AGCT 2 cut(s) 10, 157
AluI AGCT 2 cut(s) 10, 157
Alw21I GWGCWC 1 cut(s) 169
Alw26I GTCTC 2 cut(s) 204, 398
Alw44I GTGCAC 1 cut(s) 165
AlwI GGATC 3 cut(s) 300, 313, 361
AoxI GGCC 1 cut(s) 477
ApaLI GTGCAC 1 cut(s) 165
ApeKI GCWGC 2 cut(s) 10, 503
ApoI RAATTY 1 cut(s) 362
AsiGI ACCGGT 1 cut(s) 181
Asp718I GGTACC 1 cut(s) 282
AspLEI GCGC 1 cut(s) 345
AsuHPI GGTGA 2 cut(s) 118, 196
BaeGI GKGCMC 1 cut(s) 169
BamHI GGATCC 1 cut(s) 305
BanI GGYRCC 1 cut(s) 282
BanII GRGCYC 1 cut(s) 547
Bbv12I GWGCWC 1 cut(s) 169
BbvCI CCTCAGC 1 cut(s) 239
BbvI GCAGC 1 cut(s) 490
BccI CCATC 1 cut(s) 555
BceAI ACGGC 1 cut(s) 492
BciVI GTATCC 1 cut(s) 313
BclI TGATCA 1 cut(s) 190
BcoDI GTCTC 2 cut(s) 204, 398
BfuI GTATCC 1 cut(s) 313
BisI GCNGC 3 cut(s) 11, 501, 504
BlsI GCNGC 3 cut(s) 12, 502, 505
BmiI GGNNCC 3 cut(s) 284, 307, 544
BmrI ACTGGG 1 cut(s) 506
BmuI ACTGGG 1 cut(s) 506
Bpu10I CCTNAGC 1 cut(s) 239
BpuEI CTTGAG 1 cut(s) 19
BsaBI GATNNNNATC 2 cut(s) 417, 522
BsaI GGTCTC 1 cut(s) 204
BsaWI WCCGGW 1 cut(s) 181
BsaXI ACNNNNNCTCC 2 cut(s) 214, 244
Bsc4I CCNNNNNNNGG 2 cut(s) 273, 553
Bse118I RCCGGY 1 cut(s) 181
Bse1I ACTGG 2 cut(s) 499, 512
Bse3DI GCAATG 1 cut(s) 291
Bse8I GATNNNNATC 2 cut(s) 417, 522
BseGI GGATG 2 cut(s) 418, 453
BseJI GATNNNNATC 2 cut(s) 417, 522
BseLI CCNNNNNNNGG 2 cut(s) 273, 553
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 1 cut(s) 253
BseNI ACTGG 2 cut(s) 499, 512
BseRI GAGGAG 3 cut(s) 11, 222, 227
BseSI GKGCMC 1 cut(s) 169
BseXI GCAGC 1 cut(s) 490
BshFI GGCC 1 cut(s) 479
BshNI GGYRCC 1 cut(s) 282
BshTI ACCGGT 1 cut(s) 181
BsiHKAI GWGCWC 1 cut(s) 169
BsiSI CCGG 1 cut(s) 182
BslI CCNNNNNNNGG 2 cut(s) 273, 553
BsmAI GTCTC 2 cut(s) 204, 398
BsnI GGCC 1 cut(s) 479
Bso31I GGTCTC 1 cut(s) 204
Bsp1286I GDGCHC 2 cut(s) 169, 547
Bsp143I GATC 6 cut(s) 79, 145, 190, 305, 353, 418
BspACI CCGC 1 cut(s) 500
BspANI GGCC 1 cut(s) 479
BspCNI CTCAG 1 cut(s) 252
BspLI GGNNCC 3 cut(s) 284, 307, 544
BspPI GGATC 3 cut(s) 300, 313, 361
BspT107I GGYRCC 1 cut(s) 282
BspTNI GGTCTC 1 cut(s) 204
BsrDI GCAATG 1 cut(s) 291
BsrFI RCCGGY 1 cut(s) 181
BsrI ACTGG 2 cut(s) 499, 512
BssAI RCCGGY 1 cut(s) 181
BssMI GATC 6 cut(s) 79, 145, 190, 305, 353, 418
BstDEI CTNAG 1 cut(s) 239
BstENI CCTNNNNNAGG 1 cut(s) 271
BstF5I GGATG 2 cut(s) 418, 453
BstHHI GCGC 1 cut(s) 345
BstKTI GATC 6 cut(s) 82, 148, 193, 308, 356, 421
BstMAI GTCTC 2 cut(s) 204, 398
BstMBI GATC 6 cut(s) 79, 145, 190, 305, 353, 418
BstSLI GKGCMC 1 cut(s) 169
BstV1I GCAGC 1 cut(s) 490
BstX2I RGATCY 1 cut(s) 305
BstYI RGATCY 1 cut(s) 305
BsuI GTATCC 1 cut(s) 313
BsuRI GGCC 1 cut(s) 479
BtsCI GGATG 2 cut(s) 418, 453
CfoI GCGC 1 cut(s) 345
Cfr10I RCCGGY 1 cut(s) 181
Csp6I GTAC 1 cut(s) 283
CspAI ACCGGT 1 cut(s) 181
CviJI RGCY 7 cut(s) 10, 115, 157, 332, 479, 503, 545
CviKI_1 RGCY 7 cut(s) 10, 115, 157, 332, 479, 503, 545
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 1 cut(s) 239
DpnI GATC 6 cut(s) 81, 147, 192, 307, 355, 420
DpnII GATC 6 cut(s) 79, 145, 190, 305, 353, 418
EaeI YGGCCR 1 cut(s) 477
Eco24I GRGCYC 1 cut(s) 547
Eco31I GGTCTC 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 536
EcoNI CCTNNNNNAGG 1 cut(s) 271
EcoT38I GRGCYC 1 cut(s) 547
FaiI YATR 2 cut(s) 110, 532
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 3 cut(s) 11, 501, 504
FokI GGATG 2 cut(s) 425, 460
FriOI GRGCYC 1 cut(s) 547
Fsp4HI GCNGC 3 cut(s) 11, 501, 504
GlaI GCGC 1 cut(s) 344
GluI GCNGC 3 cut(s) 11, 501, 504
HaeIII GGCC 1 cut(s) 479
HapII CCGG 1 cut(s) 182
HhaI GCGC 1 cut(s) 345
Hin6I GCGC 1 cut(s) 343
HinP1I GCGC 1 cut(s) 343
HinfI GANTC 3 cut(s) 75, 288, 518
HpaII CCGG 1 cut(s) 182
HphI GGTGA 2 cut(s) 118, 196
Hpy166II GTNNAC 2 cut(s) 167, 179
Hpy188I TCNGA 2 cut(s) 358, 528
Hpy188III TCNNGA 1 cut(s) 274
Hpy8I GTNNAC 2 cut(s) 167, 179
Hpy99I CGWCG 1 cut(s) 303
HpyCH4IV ACGT 1 cut(s) 326
HpyCH4V TGCA 1 cut(s) 167
HpyF3I CTNAG 1 cut(s) 239
HpySE526I ACGT 1 cut(s) 326
HspAI GCGC 1 cut(s) 343
KpnI GGTACC 1 cut(s) 286
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 6 cut(s) 79, 145, 190, 305, 353, 418
LmnI GCTCC 2 cut(s) 154, 542
LpnPI CCDG 5 cut(s) 195, 259, 480, 525, 539
Lsp1109I GCAGC 1 cut(s) 490
MaeII ACGT 1 cut(s) 326
MaeIII GTNAC 2 cut(s) 65, 220
MalI GATC 6 cut(s) 81, 147, 192, 307, 355, 420
MboI GATC 6 cut(s) 79, 145, 190, 305, 353, 418
MboII GAAGA 1 cut(s) 542
MfeI CAATTG 1 cut(s) 537
MflI RGATCY 1 cut(s) 305
MhlI GDGCHC 2 cut(s) 169, 547
MluCI AATT 3 cut(s) 25, 362, 537
MlyI GAGTC 2 cut(s) 69, 282
MnlI CCTC 9 cut(s) 32, 44, 142, 217, 243, 248, 273, 296, 436
MslI CAYNNNNRTG 1 cut(s) 134
MspI CCGG 1 cut(s) 182
MunI CAATTG 1 cut(s) 537
NdeII GATC 6 cut(s) 79, 145, 190, 305, 353, 418
NlaIV GGNNCC 3 cut(s) 284, 307, 544
NmuCI GTSAC 1 cut(s) 65
PfeI GAWTC 1 cut(s) 518
PinAI ACCGGT 1 cut(s) 181
PkrI GCNGC 3 cut(s) 12, 502, 505
PleI GAGTC 2 cut(s) 69, 282
PpsI GAGTC 2 cut(s) 69, 282
PsiI TTATAA 1 cut(s) 110
PspN4I GGNNCC 3 cut(s) 284, 307, 544
PsuI RGATCY 1 cut(s) 305
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
RseI CAYNNNNRTG 1 cut(s) 134
SatI GCNGC 3 cut(s) 11, 501, 504
Sau3AI GATC 6 cut(s) 79, 145, 190, 305, 353, 418
SchI GAGTC 2 cut(s) 69, 282
SduI GDGCHC 2 cut(s) 169, 547
SetI ASST 8 cut(s) 12, 134, 159, 209, 269, 284, 329, 558
SmiMI CAYNNNNRTG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
Sse9I AATT 3 cut(s) 25, 362, 537
SsiI CCGC 1 cut(s) 500
TaiI ACGT 1 cut(s) 329
TaqI TCGA 4 cut(s) 78, 117, 298, 516
TaqII GACCGA 1 cut(s) 186
TasI AATT 3 cut(s) 25, 362, 537
TauI GCSGC 1 cut(s) 503
TfiI GAWTC 1 cut(s) 518
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 2 cut(s) 10, 503
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 3 cut(s) 5, 375, 464
VneI GTGCAC 1 cut(s) 165
XagI CCTNNNNNAGG 1 cut(s) 271
XapI RAATTY 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.