Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0023205

Physical Location & Seq

Genomic Coordinates Forward (+)

12752116 .. 12753138

Gene Structure 1023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0078100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGCTCATTTTGGGTCCAAACAACACTCAAGGCAAGCATGGTCAAAATGTTTCTTTCTCTGAGAAGGTACACAATAAGCTTGACTTTGATTGGCGTTGTGATGTAGTTGTTAAACTTATGGGTAGACCGAATTCTACAAACACCTTTGATTTCATGTTGAAAGGGTTAAGAAGAAAATGGCAAGTCAAAGGGGGCTGGCACCTCATTGACCTTCCCAATGACTTTTTCATTGTTAAGTTTAATCTGGAAGAAGATATGAATAGTGTGTTGTGTGGAGGACCTTGGATTCTAGCTGGTCAGAATTTGATTGTTAGGAAATGGAGGCCTGATTTTGACCCCTTGAATGAATTTATTGGAAAAATGGCTTTATGGGTTAGAATTTGTGGTTTGCCTGTTAAATATTTCAAGGATTACACTGTTGCTAAAATTGGCAAAATTCTTGGAGATGTTGTTAAGGTTGATCAGGTTACTATTGGCCAATCTAGGGGCAAATTTGCTCGAGTTTGTATTGAAGTTGATCTCAGTAAGCCCTTGCACCCTTATGTTGAAGTGGAATATGTTGCCTACCATGTTGTTTATGAAGGAATTTCCGTGATATGCTTTGAATGTTGTTGCTTTGGCCACTCTAAGGATAAATGCCCAACCATACATGCTGTGCCAAATGCTAATCCTCAAGCTAGTGAACCTGATAGCGACACTATTGACCAGGTTATGGTCTCCAAGGGAAATTCGGAATCACAACAGGATATGGACACTTCTCAAGCTCAACCTTCAATTATTAAGGAGGACATGGGACCATGGATGCTGATGAATTACAGGAATAAAAAGAAGACCATTGATGGTGGGGGAGCAAAGAAAAATACTAATAAGGGTTCAAGGTTTACTGTTTCGCAGGATGAGGATGTTATGCCTTCTACTGAACCTAAGACCATTACTGAGAATACCACTAAGCCATCAAATCCTCCAATTGTGAAACTGTGGACTAGTTTCCAAGTGAAAAGACTAGATAGAACAAATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008017 GO:0008092 GO:0015631 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 map04139 map04214 map04217 map04621 map04668

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

340

Amino Acids

38.51

Weight (kDa)

8.6

Isoelectric Point (pI)

34.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	47 - 113	2.5e-13	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0023205)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_2G00116860 Rroxscaffold_3G00246650
rosa_rugosa	Rorug01G0078100
rosa_samantha	Rh7CG285400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	198
AccB7I	CCANNNNNTGG	1 cut(s)	712
AccI	GTMKAC	1 cut(s)	124
AcoI	YGGCCR	2 cut(s)	475, 619
AcsI	RAATTY	8 cut(s)	130, 301, 347, 378, 435, 491, 585, 727
AfaI	GTAC	1 cut(s)	69
AfiI	CCNNNNNNNGG	3 cut(s)	484, 628, 712
AgsI	TTSAA	8 cut(s)	160, 343, 406, 512, 548, 605, 774, 876
AhlI	ACTAGT	1 cut(s)	983
AjnI	CCWGG	1 cut(s)	705
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AluBI	AGCT	4 cut(s)	79, 293, 677, 764
AluI	AGCT	4 cut(s)	79, 293, 677, 764
Alw26I	GTCTC	1 cut(s)	721
Ama87I	CYCGRG	1 cut(s)	498
AoxI	GGCC	3 cut(s)	323, 475, 619
ApoI	RAATTY	8 cut(s)	130, 301, 347, 378, 435, 491, 585, 727
AspS9I	GGNCC	3 cut(s)	14, 278, 794
AvaI	CYCGRG	1 cut(s)	498
AvaII	GGWCC	3 cut(s)	14, 278, 794
BalI	TGGCCA	2 cut(s)	477, 621
BanI	GGYRCC	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	836
BccI	CCATC	2 cut(s)	833, 961
BciT130I	CCWGG	1 cut(s)	707
BclI	TGATCA	1 cut(s)	460
BcoDI	GTCTC	1 cut(s)	721
BcuI	ACTAGT	1 cut(s)	983
BfaI	CTAG	5 cut(s)	290, 483, 678, 984, 1004
Bme1390I	CCNGG	1 cut(s)	707
Bme18I	GGWCC	3 cut(s)	14, 278, 794
BmeT110I	CYCGRG	1 cut(s)	498
BmgT120I	GGNCC	3 cut(s)	14, 278, 794
BmiI	GGNNCC	3 cut(s)	15, 200, 795
BmrFI	CCNGG	1 cut(s)	707
BmsI	GCATC	1 cut(s)	792
BpiI	GAAGAC	1 cut(s)	836
BpuEI	CTTGAG	3 cut(s)	12, 657, 744
BsaI	GGTCTC	1 cut(s)	721
BsaJI	CCNNGG	3 cut(s)	281, 720, 797
BsaXI	ACNNNNNCTCC	2 cut(s)	435, 465
Bsc4I	CCNNNNNNNGG	3 cut(s)	484, 628, 712
BseBI	CCWGG	1 cut(s)	707
BseDI	CCNNGG	3 cut(s)	281, 720, 797
BseGI	GGATG	3 cut(s)	807, 901, 907
BseLI	CCNNNNNNNGG	3 cut(s)	484, 628, 712
BseMII	CTCAG	3 cut(s)	51, 535, 927
BshFI	GGCC	3 cut(s)	325, 477, 621
BshNI	GGYRCC	1 cut(s)	198
BsiHKCI	CYCGRG	1 cut(s)	498
BslFI	GGGAC	1 cut(s)	807
BslI	CCNNNNNNNGG	3 cut(s)	484, 628, 712
BsmAI	GTCTC	1 cut(s)	721
BsmFI	GGGAC	1 cut(s)	807
BsnI	GGCC	3 cut(s)	325, 477, 621
Bso31I	GGTCTC	1 cut(s)	721
BsoBI	CYCGRG	1 cut(s)	498
Bsp143I	GATC	2 cut(s)	460, 517
Bsp19I	CCATGG	1 cut(s)	797
BspANI	GGCC	3 cut(s)	325, 477, 621
BspCNI	CTCAG	3 cut(s)	52, 534, 928
BspLI	GGNNCC	3 cut(s)	15, 200, 795
BspT107I	GGYRCC	1 cut(s)	198
BspTNI	GGTCTC	1 cut(s)	721
BssECI	CCNNGG	3 cut(s)	281, 720, 797
BssMI	GATC	2 cut(s)	460, 517
BssT1I	CCWWGG	3 cut(s)	281, 720, 797
Bst2UI	CCWGG	1 cut(s)	707
Bst4CI	ACNGT	3 cut(s)	418, 886, 978
BstC8I	GCNNGC	2 cut(s)	35, 197
BstDEI	CTNAG	6 cut(s)	60, 521, 627, 924, 936, 948
BstDSI	CCRYGG	1 cut(s)	797
BstF5I	GGATG	3 cut(s)	807, 901, 907
BstKTI	GATC	2 cut(s)	463, 520
BstMAI	GTCTC	1 cut(s)	721
BstMBI	GATC	2 cut(s)	460, 517
BstNI	CCWGG	1 cut(s)	707
BstNSI	RCATGY	1 cut(s)	653
BstSCI	CCNGG	1 cut(s)	705
BstV2I	GAAGAC	1 cut(s)	836
BsuRI	GGCC	3 cut(s)	325, 477, 621
BtgI	CCRYGG	1 cut(s)	797
BtsCI	GGATG	3 cut(s)	807, 901, 907
BtsIMutI	CAGTG	1 cut(s)	414
Cac8I	GCNNGC	2 cut(s)	35, 197
Cfr13I	GGNCC	3 cut(s)	14, 278, 794
CsiI	ACCWGGT	1 cut(s)	705
Csp6I	GTAC	1 cut(s)	68
CviAII	CATG	6 cut(s)	38, 154, 569, 650, 790, 798
CviQI	GTAC	1 cut(s)	68
DdeI	CTNAG	6 cut(s)	60, 521, 627, 924, 936, 948
DpnI	GATC	2 cut(s)	462, 519
DpnII	GATC	2 cut(s)	460, 517
EaeI	YGGCCR	2 cut(s)	475, 619
Eco130I	CCWWGG	3 cut(s)	281, 720, 797
Eco147I	AGGCCT	1 cut(s)	325
Eco31I	GGTCTC	1 cut(s)	721
Eco47I	GGWCC	3 cut(s)	14, 278, 794
Eco88I	CYCGRG	1 cut(s)	498
EcoO109I	RGGNCCY	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	705
EcoT14I	CCWWGG	3 cut(s)	281, 720, 797
ErhI	CCWWGG	3 cut(s)	281, 720, 797
FaeI	CATG	6 cut(s)	41, 157, 572, 653, 793, 801
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FaqI	GGGAC	1 cut(s)	807
FatI	CATG	6 cut(s)	37, 153, 568, 649, 789, 797
FbaI	TGATCA	1 cut(s)	460
FblI	GTMKAC	1 cut(s)	124
FokI	GGATG	3 cut(s)	814, 908, 914
FspBI	CTAG	5 cut(s)	290, 483, 678, 984, 1004
HaeIII	GGCC	3 cut(s)	325, 477, 621
Hin1II	CATG	6 cut(s)	41, 157, 572, 653, 793, 801
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	2 cut(s)	286, 734
Hpy166II	GTNNAC	5 cut(s)	70, 125, 683, 882, 981
Hpy188I	TCNGA	3 cut(s)	61, 300, 733
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	5 cut(s)	70, 125, 683, 882, 981
HpyAV	CCTTC	5 cut(s)	58, 221, 575, 780, 921
HpyCH4III	ACNGT	3 cut(s)	418, 886, 978
HpyCH4V	TGCA	1 cut(s)	535
HpyF3I	CTNAG	6 cut(s)	60, 521, 627, 924, 936, 948
Hsp92II	CATG	6 cut(s)	41, 157, 572, 653, 793, 801
Ksp22I	TGATCA	1 cut(s)	460
Kzo9I	GATC	2 cut(s)	460, 517
LmnI	GCTCC	1 cut(s)	848
LweI	GCATC	1 cut(s)	792
MabI	ACCWGGT	1 cut(s)	705
MaeI	CTAG	5 cut(s)	290, 483, 678, 984, 1004
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	2 cut(s)	462, 519
MboI	GATC	2 cut(s)	460, 517
MboII	GAAGA	4 cut(s)	183, 260, 263, 841
MfeI	CAATTG	1 cut(s)	966
MlsI	TGGCCA	2 cut(s)	477, 621
MluNI	TGGCCA	2 cut(s)	477, 621
MnlI	CCTC	7 cut(s)	212, 269, 315, 681, 778, 892, 972
Mox20I	TGGCCA	2 cut(s)	477, 621
MscI	TGGCCA	2 cut(s)	477, 621
MseI	TTAA	7 cut(s)	111, 167, 234, 240, 396, 453, 780
MslI	CAYNNNNRTG	1 cut(s)	540
Msp20I	TGGCCA	2 cut(s)	477, 621
MspR9I	CCNGG	1 cut(s)	707
MunI	CAATTG	1 cut(s)	966
MvaI	CCWGG	1 cut(s)	707
NcoI	CCATGG	1 cut(s)	797
NdeII	GATC	2 cut(s)	460, 517
NlaIII	CATG	6 cut(s)	41, 157, 572, 653, 793, 801
NlaIV	GGNNCC	3 cut(s)	15, 200, 795
NspI	RCATGY	1 cut(s)	653
PaeR7I	CTCGAG	1 cut(s)	498
PceI	AGGCCT	1 cut(s)	325
PfeI	GAWTC	2 cut(s)	286, 734
PflMI	CCANNNNNTGG	1 cut(s)	712
PpuMI	RGGWCCY	1 cut(s)	278
Psp5II	RGGWCCY	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	705
PspGI	CCWGG	1 cut(s)	705
PspN4I	GGNNCC	3 cut(s)	15, 200, 795
PspPI	GGNCC	3 cut(s)	14, 278, 794
PspPPI	RGGWCCY	1 cut(s)	278
PspXI	VCTCGAGB	1 cut(s)	498
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
RseI	CAYNNNNRTG	1 cut(s)	540
SaqAI	TTAA	7 cut(s)	111, 167, 234, 240, 396, 453, 780
Sau3AI	GATC	2 cut(s)	460, 517
Sau96I	GGNCC	3 cut(s)	14, 278, 794
ScrFI	CCNGG	1 cut(s)	707
SexAI	ACCWGGT	1 cut(s)	705
SfaNI	GCATC	1 cut(s)	792
Sfr274I	CTCGAG	1 cut(s)	498
SinI	GGWCC	3 cut(s)	14, 278, 794
SlaI	CTCGAG	1 cut(s)	498
SmiMI	CAYNNNNRTG	1 cut(s)	540
SmlI	CTYRAG	4 cut(s)	27, 498, 672, 759
SmoI	CTYRAG	4 cut(s)	27, 498, 672, 759
SpeI	ACTAGT	1 cut(s)	983
SseBI	AGGCCT	1 cut(s)	325
SspI	AATATT	1 cut(s)	401
SspMI	CTAG	5 cut(s)	290, 483, 678, 984, 1004
StuI	AGGCCT	1 cut(s)	325
StyD4I	CCNGG	1 cut(s)	705
StyI	CCWWGG	3 cut(s)	281, 720, 797
TaaI	ACNGT	3 cut(s)	418, 886, 978
TaqI	TCGA	1 cut(s)	499
TaqII	GACCGA	1 cut(s)	142
TfiI	GAWTC	2 cut(s)	286, 734
Tru1I	TTAA	7 cut(s)	111, 167, 234, 240, 396, 453, 780
Tru9I	TTAA	7 cut(s)	111, 167, 234, 240, 396, 453, 780
TscAI	CASTG	1 cut(s)	421
TspDTI	ATGAA	6 cut(s)	142, 217, 272, 360, 594, 824
TspGWI	ACGGA	1 cut(s)	580
TspRI	CASTG	1 cut(s)	421
Van91I	CCANNNNNTGG	1 cut(s)	712
VpaK11BI	GGWCC	3 cut(s)	14, 278, 794
XapI	RAATTY	8 cut(s)	130, 301, 347, 378, 435, 491, 585, 727
XceI	RCATGY	1 cut(s)	653
XhoI	CTCGAG	1 cut(s)	498
XmiI	GTMKAC	1 cut(s)	124
XspI	CTAG	5 cut(s)	290, 483, 678, 984, 1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.