Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005218

Physical Location & Seq

Genomic Coordinates Forward (+)

6196068 .. 6197230

Gene Structure 1163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00337970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGTCCGAATATGCCAACAAAAGAACCCGTGGGGCTTTTATAGCAGCGGTGTTTGCTATGCAAGGGTTTGGGATTTTGGCTGGAGGAATTGTGGCTTTGATTGTCTCAACTGCTTTCGATAAAAGCTTCCCAGCTCCTACATACGCAGAGAATGCGGCTGCTTCTCTAGCCCCTCAAGCCGATTATGTCTGGCGTATAATTCTCATGTTTGGGGCTGTTCCTGCTGGTATGACTTACTACTGGCGTATGAAAATGCCCGAAACTGCCCGTTACACCGCCCTCGTGGCCAAAAATGCAAAGCTAGCTGCAGAAAATATGTCTAAGGTTCTCCAAGTTGAACTTGAAGTTGAAGAAGAGAAGGTACAAAAATATACTGAAGAGAAATCCAATTCCTTTGGTTTGTTCAGTAAGGAGTTTGCTAAAAGGCATGGTTGGCATTTACTTGGAACTACTTCAACTTGGTTCCTATTAGACATTGCCTTCTACAGCCAAAACCTTTTCCAAAAGGATATCTTCTCCGCTATCGGGTGGATCCCTTCAGCGGAAAAAATGAATGCAATTCATGAGGTTTTTAGAATTGCAAGAGCACAGACACTCATAGCAATGTGCAGCACTGTGCCTGGCTACTGGTTCACTGTGGCGTTCATTGATTATATGGGCCGATTTGCAATCCAGCTAATGGGCTTCTTCTTCATGACAGCCTTCATGTTTGCACTTGCAATTCCTTACCATCACTGGACCTTGAAGCCCAACAGAATTGGGTCAACATGTCACGGAATTTCTGCGGCGGCTGGGAAGGCGGGAGCAATCGTGGGAGCTTTCGGATTCTTGTATGCGGCCCAAAGCAAGGACCCGAAGAAAACCGATGCAGGGTACCCGCCCGGCATTGGTGTGAAGAATTCTCTAATTATGCTTGGTGTGATTAACTTTTTGGGGATGGTGTTTACCTTCTTGGTGCCAGAGTCAAAGGGAAAATCACTTGAAGAGTTGACAGGTGAGAATGAAGATGGGGATGAGGCCACAGAGGAGCAGGCCCCTCCTACCAATAGAACTGTCCCACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005315 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007154 GO:0008150 GO:0008509 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0015075 GO:0015103 GO:0015114 GO:0015291 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0016036 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034220 GO:0035435 GO:0042594 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0071496 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:1901683 GO:1901684

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

354

Amino Acids

39.04

Weight (kDa)

7.72

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	2 - 274	3.6e-14	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32830
fragaria_vesca	FvH4_4g03540 FvH4_4g03540
malus_domestica	MD07G1046300.v1.1 MD13G1213400.v1.1
prunus_persica	Prupe.1G038600_v2.0.a1 Prupe.1G038600_v2.0.a1 Prupe.1G038600_v2.0.a1 Prupe.2G042500_v2.0.a1
pyrus_communis	pycom07g03340 pycom13g18610
rosa_chinensis	RchiOBHm_Chr4g0392861 RchiOBHm_Chr4g0392881
rosa_laevigata	RLG00000009784 RLG00000009786
rosa_multiflora	Rmu_sc0000498.1_g000061 Rmu_sc0000498.1_g000071
rosa_roxburghii	Rroxscaffold_5G00337930 Rroxscaffold_5G00337970
rosa_rugosa	Rorug03G0340800 Rorug03G0340900
rosa_samantha	Rh4AG044500 Rh4BG040100 Rh4BG040200 Rh4CG047600 Rh4CG047700 Rh4DG041900
rosa_wichuraiana	Rw4G003440 Rw4G003480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	873
AccB1I	GGYRCC	2 cut(s)	873, 955
AccB7I	CCANNNNNTGG	1 cut(s)	679
AclWI	GGATC	2 cut(s)	526, 539
AcoI	YGGCCR	1 cut(s)	285
AcsI	RAATTY	2 cut(s)	777, 898
AcuI	CTGAAG	2 cut(s)	396, 522
AfaI	GTAC	2 cut(s)	363, 875
AfiI	CCNNNNNNNGG	6 cut(s)	525, 541, 679, 847, 870, 887
AflIII	ACRYGT	1 cut(s)	767
AgsI	TTSAA	6 cut(s)	338, 344, 350, 456, 745, 983
AjnI	CCWGG	1 cut(s)	619
AluBI	AGCT	6 cut(s)	126, 134, 301, 305, 676, 818
AluI	AGCT	6 cut(s)	126, 134, 301, 305, 676, 818
Alw21I	GWGCWC	1 cut(s)	589
Alw26I	GTCTC	1 cut(s)	109
AlwI	GGATC	2 cut(s)	526, 539
AoxI	GGCC	5 cut(s)	285, 658, 837, 1017, 1032
ApeKI	GCWGC	4 cut(s)	44, 158, 305, 609
ApoI	RAATTY	2 cut(s)	777, 898
Asp700I	GAANNNNTTC	1 cut(s)	451
Asp718I	GGTACC	1 cut(s)	873
AspS9I	GGNCC	5 cut(s)	658, 738, 838, 850, 1033
AsuC2I	CCSGG	1 cut(s)	882
AsuHPI	GGTGA	1 cut(s)	1007
AsuNHI	GCTAGC	1 cut(s)	301
AvaII	GGWCC	2 cut(s)	738, 850
BalI	TGGCCA	1 cut(s)	287
BamHI	GGATCC	1 cut(s)	531
BanI	GGYRCC	2 cut(s)	873, 955
BarI	GAAGNNNNNNTAC	2 cut(s)	345, 377
BauI	CACGAG	1 cut(s)	281
Bbv12I	GWGCWC	1 cut(s)	589
BbvI	GCAGC	4 cut(s)	56, 145, 292, 621
BccI	CCATC	3 cut(s)	738, 931, 1001
BciT130I	CCWGG	1 cut(s)	621
BcnI	CCSGG	1 cut(s)	882
BcoDI	GTCTC	1 cut(s)	109
BfaI	CTAG	2 cut(s)	167, 302
BfmI	CTRYAG	2 cut(s)	306, 484
BglI	GCCNNNNNGGC	1 cut(s)	284
BisI	GCNGC	8 cut(s)	45, 156, 159, 306, 610, 786, 789, 837
BlsI	GCNGC	8 cut(s)	46, 157, 160, 307, 611, 787, 790, 838
Bme1390I	CCNGG	2 cut(s)	621, 882
Bme18I	GGWCC	2 cut(s)	738, 850
BmgT120I	GGNCC	5 cut(s)	658, 738, 838, 850, 1033
BmiI	GGNNCC	6 cut(s)	464, 533, 852, 875, 957, 1035
BmrFI	CCNGG	2 cut(s)	621, 882
BmsI	GCATC	1 cut(s)	856
BmtI	GCTAGC	1 cut(s)	305
BpmI	CTGGAG	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	159
BpuMI	CCSGG	1 cut(s)	882
BsaJI	CCNNGG	1 cut(s)	28
BsaXI	ACNNNNNCTCC	4 cut(s)	75, 105, 795, 825
Bsc4I	CCNNNNNNNGG	6 cut(s)	525, 541, 679, 847, 870, 887
Bse1I	ACTGG	3 cut(s)	245, 632, 740
Bse3DI	GCAATG	2 cut(s)	474, 609
BseBI	CCWGG	1 cut(s)	621
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	2 cut(s)	942, 1018
BseLI	CCNNNNNNNGG	6 cut(s)	525, 541, 679, 847, 870, 887
BseMI	GCAATG	2 cut(s)	474, 609
BseNI	ACTGG	3 cut(s)	245, 632, 740
BseRI	GAGGAG	1 cut(s)	1040
BseXI	GCAGC	4 cut(s)	56, 145, 292, 621
BseYI	CCCAGC	2 cut(s)	130, 791
BsgI	GTGCAG	1 cut(s)	628
BshFI	GGCC	5 cut(s)	287, 660, 839, 1019, 1034
BshNI	GGYRCC	2 cut(s)	873, 955
BsiHKAI	GWGCWC	1 cut(s)	589
BsiSI	CCGG	1 cut(s)	882
BslFI	GGGAC	1 cut(s)	1040
BslI	CCNNNNNNNGG	6 cut(s)	525, 541, 679, 847, 870, 887
BsmAI	GTCTC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	1040
BsmI	GAATGC	2 cut(s)	157, 559
BsnI	GGCC	5 cut(s)	287, 660, 839, 1019, 1034
Bsp1286I	GDGCHC	1 cut(s)	589
Bsp143I	GATC	1 cut(s)	531
BspANI	GGCC	5 cut(s)	287, 660, 839, 1019, 1034
BspHI	TCATGA	2 cut(s)	562, 693
BspLI	GGNNCC	6 cut(s)	464, 533, 852, 875, 957, 1035
BspMAI	CTGCAG	1 cut(s)	310
BspOI	GCTAGC	1 cut(s)	305
BspPI	GGATC	2 cut(s)	526, 539
BspT107I	GGYRCC	2 cut(s)	873, 955
BsrDI	GCAATG	2 cut(s)	474, 609
BsrI	ACTGG	3 cut(s)	245, 632, 740
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	1 cut(s)	531
BssSI	CACGAG	1 cut(s)	281
Bst2BI	CACGAG	1 cut(s)	281
Bst2UI	CCWGG	1 cut(s)	621
Bst4CI	ACNGT	4 cut(s)	616, 637, 1054, 1062
Bst6I	CTCTTC	3 cut(s)	348, 372, 978
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstC8I	GCNNGC	2 cut(s)	303, 1032
BstDEI	CTNAG	1 cut(s)	321
BstDSI	CCRYGG	1 cut(s)	28
BstF5I	GGATG	2 cut(s)	942, 1018
BstKTI	GATC	1 cut(s)	534
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	531
BstNI	CCWGG	1 cut(s)	621
BstNSI	RCATGY	1 cut(s)	771
BstSCI	CCNGG	2 cut(s)	619, 880
BstSFI	CTRYAG	2 cut(s)	306, 484
BstV1I	GCAGC	4 cut(s)	56, 145, 292, 621
BstX2I	RGATCY	1 cut(s)	531
BstYI	RGATCY	1 cut(s)	531
BsuRI	GGCC	5 cut(s)	287, 660, 839, 1019, 1034
BtgI	CCRYGG	1 cut(s)	28
BtsCI	GGATG	2 cut(s)	942, 1018
BtsIMutI	CAGTG	4 cut(s)	612, 633, 733, 1058
Cac8I	GCNNGC	2 cut(s)	303, 1032
CciI	TCATGA	2 cut(s)	562, 693
Cfr13I	GGNCC	5 cut(s)	658, 738, 838, 850, 1033
Csp6I	GTAC	2 cut(s)	362, 874
CviAII	CATG	6 cut(s)	205, 428, 563, 694, 706, 768
CviQI	GTAC	2 cut(s)	362, 874
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	1 cut(s)	533
DpnII	GATC	1 cut(s)	531
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	3 cut(s)	348, 372, 978
EarI	CTCTTC	3 cut(s)	348, 372, 978
Eco32I	GATATC	1 cut(s)	511
Eco47I	GGWCC	2 cut(s)	738, 850
Eco57I	CTGAAG	2 cut(s)	396, 522
EcoO109I	RGGNCCY	2 cut(s)	850, 1033
EcoRI	GAATTC	1 cut(s)	898
EcoRII	CCWGG	1 cut(s)	619
EcoRV	GATATC	1 cut(s)	511
FaeI	CATG	6 cut(s)	208, 431, 566, 697, 709, 771
FalI	AAGNNNNNCTT	4 cut(s)	324, 356, 497, 529
FaqI	GGGAC	1 cut(s)	1040
FatI	CATG	6 cut(s)	204, 427, 562, 693, 705, 767
FauI	CCCGC	2 cut(s)	793, 885
Fnu4HI	GCNGC	8 cut(s)	45, 156, 159, 306, 610, 786, 789, 837
FokI	GGATG	2 cut(s)	949, 1025
Fsp4HI	GCNGC	8 cut(s)	45, 156, 159, 306, 610, 786, 789, 837
FspBI	CTAG	2 cut(s)	167, 302
GluI	GCNGC	8 cut(s)	45, 156, 159, 306, 610, 786, 789, 837
GsaI	CCCAGC	2 cut(s)	134, 795
GsuI	CTGGAG	1 cut(s)	102
HaeIII	GGCC	5 cut(s)	287, 660, 839, 1019, 1034
HapII	CCGG	1 cut(s)	882
Hin1II	CATG	6 cut(s)	208, 431, 566, 697, 709, 771
HincII	GTYRAC	2 cut(s)	765, 990
HindII	GTYRAC	2 cut(s)	765, 990
HindIII	AAGCTT	1 cut(s)	124
HinfI	GANTC	2 cut(s)	825, 962
HpaII	CCGG	1 cut(s)	882
HphI	GGTGA	1 cut(s)	1007
Hpy166II	GTNNAC	4 cut(s)	633, 765, 945, 990
Hpy188I	TCNGA	2 cut(s)	7, 824
Hpy188III	TCNNGA	2 cut(s)	563, 694
Hpy8I	GTNNAC	4 cut(s)	633, 765, 945, 990
HpyAV	CCTTC	6 cut(s)	352, 490, 546, 712, 790, 958
HpyCH4III	ACNGT	4 cut(s)	616, 637, 1054, 1062
HpyF3I	CTNAG	1 cut(s)	321
Hsp92II	CATG	6 cut(s)	208, 431, 566, 697, 709, 771
KpnI	GGTACC	1 cut(s)	877
Kzo9I	GATC	1 cut(s)	531
LmnI	GCTCC	4 cut(s)	139, 803, 815, 1027
Lsp1109I	GCAGC	4 cut(s)	56, 145, 292, 621
LweI	GCATC	1 cut(s)	856
MaeI	CTAG	2 cut(s)	167, 302
MaeIII	GTNAC	2 cut(s)	269, 770
MalI	GATC	1 cut(s)	533
MboI	GATC	1 cut(s)	531
MflI	RGATCY	1 cut(s)	531
MhlI	GDGCHC	1 cut(s)	589
MlsI	TGGCCA	1 cut(s)	287
MluNI	TGGCCA	1 cut(s)	287
MlyI	GAGTC	1 cut(s)	971
MnlI	CCTC	7 cut(s)	77, 183, 290, 559, 1009, 1018, 1047
Mox20I	TGGCCA	1 cut(s)	287
MroXI	GAANNNNTTC	1 cut(s)	451
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	1 cut(s)	924
MslI	CAYNNNNRTG	2 cut(s)	602, 890
Msp20I	TGGCCA	1 cut(s)	287
MspA1I	CMGCKG	2 cut(s)	47, 542
MspI	CCGG	1 cut(s)	882
MspR9I	CCNGG	2 cut(s)	621, 882
Mva1269I	GAATGC	2 cut(s)	157, 559
MvaI	CCWGG	1 cut(s)	621
NciI	CCSGG	1 cut(s)	882
NdeII	GATC	1 cut(s)	531
NheI	GCTAGC	1 cut(s)	301
NlaIII	CATG	6 cut(s)	208, 431, 566, 697, 709, 771
NlaIV	GGNNCC	6 cut(s)	464, 533, 852, 875, 957, 1035
NmuCI	GTSAC	1 cut(s)	770
NspI	RCATGY	1 cut(s)	771
PagI	TCATGA	2 cut(s)	562, 693
PciI	ACATGT	1 cut(s)	767
PctI	GAATGC	2 cut(s)	157, 559
PdmI	GAANNNNTTC	1 cut(s)	451
PfeI	GAWTC	1 cut(s)	825
PflMI	CCANNNNNTGG	1 cut(s)	679
PkrI	GCNGC	8 cut(s)	46, 157, 160, 307, 611, 787, 790, 838
PleI	GAGTC	1 cut(s)	970
PpsI	GAGTC	1 cut(s)	970
PpuMI	RGGWCCY	1 cut(s)	850
PscI	ACATGT	1 cut(s)	767
Psp5II	RGGWCCY	1 cut(s)	850
Psp6I	CCWGG	1 cut(s)	619
PspFI	CCCAGC	2 cut(s)	130, 791
PspGI	CCWGG	1 cut(s)	619
PspN4I	GGNNCC	6 cut(s)	464, 533, 852, 875, 957, 1035
PspPI	GGNCC	5 cut(s)	658, 738, 838, 850, 1033
PspPPI	RGGWCCY	1 cut(s)	850
PstI	CTGCAG	1 cut(s)	310
PsuI	RGATCY	1 cut(s)	531
RsaI	GTAC	2 cut(s)	363, 875
RsaNI	GTAC	2 cut(s)	362, 874
RseI	CAYNNNNRTG	2 cut(s)	602, 890
SaqAI	TTAA	1 cut(s)	924
SatI	GCNGC	8 cut(s)	45, 156, 159, 306, 610, 786, 789, 837
Sau3AI	GATC	1 cut(s)	531
Sau96I	GGNCC	5 cut(s)	658, 738, 838, 850, 1033
SchI	GAGTC	1 cut(s)	971
ScrFI	CCNGG	2 cut(s)	621, 882
SduI	GDGCHC	1 cut(s)	589
SfaNI	GCATC	1 cut(s)	856
SfcI	CTRYAG	2 cut(s)	306, 484
SinI	GGWCC	2 cut(s)	738, 850
SmiMI	CAYNNNNRTG	2 cut(s)	602, 890
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
SspMI	CTAG	2 cut(s)	167, 302
StyD4I	CCNGG	2 cut(s)	619, 880
TaaI	ACNGT	4 cut(s)	616, 637, 1054, 1062
TaqI	TCGA	1 cut(s)	117
TauI	GCSGC	4 cut(s)	158, 788, 791, 839
TfiI	GAWTC	1 cut(s)	825
Tru1I	TTAA	1 cut(s)	924
Tru9I	TTAA	1 cut(s)	924
TscAI	CASTG	4 cut(s)	619, 640, 740, 1065
TseFI	GTSAC	1 cut(s)	770
TseI	GCWGC	4 cut(s)	44, 158, 305, 609
Tsp45I	GTSAC	1 cut(s)	770
TspDTI	ATGAA	7 cut(s)	263, 551, 566, 634, 682, 694, 1017
TspGWI	ACGGA	1 cut(s)	789
TspRI	CASTG	4 cut(s)	619, 640, 740, 1065
Van91I	CCANNNNNTGG	1 cut(s)	679
VpaK11BI	GGWCC	2 cut(s)	738, 850
XapI	RAATTY	2 cut(s)	777, 898
XceI	RCATGY	1 cut(s)	771
XmnI	GAANNNNTTC	1 cut(s)	451
XspI	CTAG	2 cut(s)	167, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.