Rroxscaffold_5G00366420

Dihydrolipoyl dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0010455
Physical Location & Seq
Reverse (-)
48254397 .. 48259290
4894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00366420.1

Sequence Viewer

Length: 1704 bp
ATGCAGGCCTCGCTTTCTCTCCCTACTCTCTCCCCCACCATTCCCAGATCAAACTACGTCGTTCAGTCCACGCTGCCTCTCGCTCCCTCCAAGCCGATCAATCTCCGCTTCTGCTGCGGTCTCCGGCGAGAGGCCTTCGGGTTCTCAAAGCTCGGCCAGTCCGACTCGCACCGTTTCTGGCTCGCGGCGGCTTCGCGGTCCAAGAAGGTTTCGGCGGCCTTGTCTGATAATGGAAGCCCTCCGAAGTCGTTCGACTACGACTTGCTCATCATCGGAGCCGGCGTCGGCGGCCACGGCGCTGCTCTCCACGCCGTCGAGAAGGGTCTGAAAACCGCCATCGTAGAGGGAGATGTGGTGGGTGGAACATGTGTGAACAGAGGATGTGTTCCATCTAAAGCTCTTCTTGCAGTGAGTGGTCGGATGCGGGAGCTTCAAAATGAACATCACCTTAAGGCTTTGGGTTTGCAGGTTTCAGCAGCTGGTTATGACAGACAGGGAGTGGCCGATCATGCAAACAATCTTGCATCAAAAATCCGTTCTAGTTTGACCAATTCAATGAAGTCGCTTGGAGTGGACATACTAACAGGTTTTGGTACAATCCTGGGCCCTCAAAAGGTGAAAGTTGGAGCATTGGACAAAGTAGTAACTGCAAAAAATATAATCATTGCCACTGGTTCTGTTCCTTTTGTTCCTAAGGGCATTGAAGTCGATGGGAAGACCGTGATTACGAGTGACCATGCCCTCAAATTGGAGTCTGTTCCTGATTGGATTGCTATCGTTGGAAGTGGTTACATTGGCCTTGAGTTCAGTGATGTGTATACAGCACTTGGAAGTGAGGTTACTTTTATTGAAGCTTTGGATCAGCTTATGCCTGGTTTTGATCCTGAGATTGGGAAGTTAGCCCAAAGGGTTCTAATAAATCCACGAAGGATTGACTATCAAACTGGAGTATTTGCAAGCAAGATCACCCCAGCAAAGGATGGGAAACCAGTCATCATTGAACTAATTGACGCAAAGACTAAGGAACCGAGAGATACTCTAGAGGTAGATGCAGCATTAATTGCCACCGGAAGAGCCCCATTCACACACGGTCTTGGATTGGAGAATATTGATGTAGCAACACAACGTGGTTTTATTCCTGTTGATGAGCGCATGAGGGTAATAGATGCAAATGGCAAATTGGTTCCTCACCTGTTTTGCATTGGTGATGCCAACGGCAAGATGATGCTCGCTCACGCAGCAAGTGCACAAGGCATTTCAGTGGTTGAACAAGTCACAGGAAGAGACCACGTGCTCAACCATTTGAGCATCCCCGCAGCTTGCTTCACCCATCCTGAAATCAGTATGGTTGGATTGACAGAGCCCCAAGCAAGGGAGATGGCTAAGAAGGAGGGATTTGAAGTAGGTATTGCCAAGACAAGCTTCAAGGCCAACACAAAGGCCCTTGCAGAAAATGAAGGAGAGGGACTTGCTAAGTTGATATACAGACCAGATAACGGAGAGATCCTTGGCGTTCATATCTTTGGATTGCATGCTGCAGACCTCATTCACGAGGCATCCAATGCAATAGCATTGGGAACACGCATTCAAGATCTCAAACTTGCTGTCCATGCACATCCTACCTTGTCTGAAGTGCTTGATGAACTTTTCAAGTCAGCAAAGGTTAAAGAGCATGTTTCTAGCCCTCAAGCAGTCGCAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004148 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006082 GO:0006084 GO:0006085 GO:0006086 GO:0006090 GO:0006139 GO:0006163 GO:0006164 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032787 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046390 GO:0046483 GO:0046685 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0055114 GO:0070013 GO:0071616 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00010 ko00020 ko00260 ko00280 ko00620 ko00630 ko00640 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00260 map00280 map00620 map00630 map00640 map01100 map01110 map01120 map01130 map01200
Pfam Domains
Protein Families
Pyr_redox_2 Pyr_redox_dim

Protein Analysis

567

Amino Acids

60.18

Weight (kDa)

7.32

Isoelectric Point (pI)

27.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_2 PF07992 86 - 418 1.8e-58 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox PF00070 257 - 328 5.4e-14 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_dim PF02852 437 - 548 2e-30 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16950 AT3G16950 AT4G16155
fragaria_vesca FvH4_4g19440 FvH4_4g19440 FvH4_4g19440 FvH4_4g19440 FvH4_4g19440
malus_domestica MD16G1157500.v1.1
prunus_persica Prupe.1G122400_v2.0.a1
pyrus_communis pycom13g13410
rosa_chinensis RchiOBHm_Chr4g0424491
rosa_laevigata RLG00000007470
rosa_multiflora Rmu_sc0002603.1_g000006
rosa_roxburghii Rroxscaffold_5G00366420
rosa_rugosa Rorug04G0198000
rosa_samantha Rh4AG254300 Rh4BG259700 Rh4CG270800 Rh4DG254000
rosa_wichuraiana Rw4G021960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 457
AccI GTMKAC 1 cut(s) 818
AccII CGCG 2 cut(s) 185, 196
AclWI GGATC 3 cut(s) 867, 875, 1498
AcoI YGGCCR 3 cut(s) 154, 289, 501
AcuI CTGAAG 1 cut(s) 1650
AcvI CACGTG 1 cut(s) 1291
AcyI GRCGYC 1 cut(s) 282
AdeI CACNNNGTG 1 cut(s) 1127
AfaI GTAC 1 cut(s) 595
AfiI CCNNNNNNNGG 8 cut(s) 130, 613, 748, 890, 976, 1371, 1372, 1496
AflII CTTAAG 1 cut(s) 449
AflIII ACRYGT 1 cut(s) 365
AjnI CCWGG 2 cut(s) 600, 871
AjuI GAANNNNNNNTTGG 2 cut(s) 1406, 1438
AluBI AGCT 8 cut(s) 151, 398, 430, 479, 854, 865, 1319, 1422
AluI AGCT 8 cut(s) 151, 398, 430, 479, 854, 865, 1319, 1422
Alw21I GWGCWC 2 cut(s) 1249, 1296
Alw26I GTCTC 2 cut(s) 125, 1278
Alw44I GTGCAC 1 cut(s) 1245
AlwI GGATC 3 cut(s) 867, 875, 1498
AlwNI CAGNNNCTG 1 cut(s) 479
ApaI GGGCCC 1 cut(s) 608
ApaLI GTGCAC 1 cut(s) 1245
ApeKI GCWGC 8 cut(s) 73, 114, 299, 476, 1052, 1238, 1316, 1535
ArsI GACNNNNNNTTYG 2 cut(s) 1590, 1622
AseI ATTAAT 1 cut(s) 1058
Asp700I GAANNNNTTC 1 cut(s) 248
AspLEI GCGC 2 cut(s) 299, 1152
AspS9I GGNCC 4 cut(s) 198, 604, 605, 1441
AsuHPI GGTGA 6 cut(s) 437, 628, 958, 1181, 1217, 1318
AvaII GGWCC 1 cut(s) 198
AxyI CCTNAGG 1 cut(s) 693
BaeGI GKGCMC 2 cut(s) 608, 1249
BanII GRGCYC 3 cut(s) 608, 1078, 1365
BarI GAAGNNNNNNTAC 2 cut(s) 823, 855
BauI CACGAG 1 cut(s) 1550
BbrPI CACGTG 1 cut(s) 1291
BbsI GAAGAC 1 cut(s) 722
Bbv12I GWGCWC 2 cut(s) 1249, 1296
BbvI GCAGC 8 cut(s) 60, 101, 286, 488, 1064, 1250, 1328, 1522
BccI CCATC 6 cut(s) 344, 397, 704, 974, 1338, 1372
BceAI ACGGC 3 cut(s) 296, 310, 1231
BcgI CGANNNNNNTGC 2 cut(s) 688, 722
BciT130I CCWGG 2 cut(s) 602, 873
BcoDI GTCTC 2 cut(s) 125, 1278
BfaI CTAG 3 cut(s) 540, 1040, 1680
BfmI CTRYAG 1 cut(s) 1536
BfoI RGCGCY 1 cut(s) 300
BfrI CTTAAG 1 cut(s) 449
BfuAI ACCTGC 1 cut(s) 457
BglII AGATCT 1 cut(s) 1591
Bme1390I CCNGG 2 cut(s) 602, 873
Bme18I GGWCC 1 cut(s) 198
BmgT120I GGNCC 4 cut(s) 198, 604, 605, 1441
BmiI GGNNCC 4 cut(s) 277, 606, 1026, 1185
BmrFI CCNGG 2 cut(s) 602, 873
BmsI GCATC 8 cut(s) 411, 533, 1039, 1156, 1198, 1215, 1317, 1565
BpiI GAAGAC 1 cut(s) 722
BplI GAGNNNNNCTC 2 cut(s) 1021, 1053
BpmI CTGGAG 1 cut(s) 966
BpuEI CTTGAG 2 cut(s) 821, 1671
BsaAI YACGTR 1 cut(s) 1291
BsaBI GATNNNNATC 1 cut(s) 773
BsaHI GRCGYC 1 cut(s) 282
BsaI GGTCTC 2 cut(s) 125, 1278
BsaJI CCNNGG 3 cut(s) 292, 601, 1507
BsaWI WCCGGW 1 cut(s) 1067
BsaXI ACNNNNNCTCC 4 cut(s) 267, 297, 339, 369
Bsc4I CCNNNNNNNGG 8 cut(s) 130, 613, 748, 890, 976, 1371, 1372, 1496
Bse118I RCCGGY 1 cut(s) 278
Bse1I ACTGG 4 cut(s) 157, 676, 949, 989
Bse21I CCTNAGG 1 cut(s) 693
Bse3DI GCAATG 1 cut(s) 663
Bse8I GATNNNNATC 1 cut(s) 773
BseBI CCWGG 2 cut(s) 602, 873
BseDI CCNNGG 3 cut(s) 292, 601, 1507
BseGI GGATG 7 cut(s) 386, 426, 985, 1308, 1330, 1556, 1615
BseJI GATNNNNATC 1 cut(s) 773
BseLI CCNNNNNNNGG 8 cut(s) 130, 613, 748, 890, 976, 1371, 1372, 1496
BseMI GCAATG 1 cut(s) 663
BseMII CTCAG 1 cut(s) 876
BseNI ACTGG 4 cut(s) 157, 676, 949, 989
BseSI GKGCMC 2 cut(s) 608, 1249
BseXI GCAGC 8 cut(s) 60, 101, 286, 488, 1064, 1250, 1328, 1522
BseYI CCCAGC 1 cut(s) 970
Bsh1236I CGCG 2 cut(s) 185, 196
BsiHKAI GWGCWC 2 cut(s) 1249, 1296
BsiSI CCGG 3 cut(s) 124, 279, 1068
BslFI GGGAC 1 cut(s) 1479
BslI CCNNNNNNNGG 8 cut(s) 130, 613, 748, 890, 976, 1371, 1372, 1496
BsmAI GTCTC 2 cut(s) 125, 1278
BsmFI GGGAC 1 cut(s) 1479
BsmI GAATGC 1 cut(s) 1584
Bso31I GGTCTC 2 cut(s) 125, 1278
Bsp120I GGGCCC 1 cut(s) 604
Bsp1286I GDGCHC 5 cut(s) 608, 1078, 1249, 1296, 1365
Bsp143I GATC 8 cut(s) 47, 96, 505, 859, 880, 963, 1503, 1591
BspCNI CTCAG 1 cut(s) 877
BspFNI CGCG 2 cut(s) 185, 196
BspLI GGNNCC 4 cut(s) 277, 606, 1026, 1185
BspMAI CTGCAG 1 cut(s) 1540
BspMI ACCTGC 1 cut(s) 457
BspPI GGATC 3 cut(s) 867, 875, 1498
BspQI GCTCTTC 2 cut(s) 405, 1066
BspTI CTTAAG 1 cut(s) 449
BspTNI GGTCTC 2 cut(s) 125, 1278
BsrDI GCAATG 1 cut(s) 663
BsrFI RCCGGY 1 cut(s) 278
BsrI ACTGG 4 cut(s) 157, 676, 949, 989
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 3 cut(s) 292, 601, 1507
BssMI GATC 8 cut(s) 47, 96, 505, 859, 880, 963, 1503, 1591
BssNAI GTATAC 1 cut(s) 819
BssNI GRCGYC 1 cut(s) 282
BssSI CACGAG 1 cut(s) 1550
BssT1I CCWWGG 1 cut(s) 1507
Bst1107I GTATAC 1 cut(s) 819
Bst2BI CACGAG 1 cut(s) 1550
Bst2UI CCWGG 2 cut(s) 602, 873
Bst4CI ACNGT 3 cut(s) 173, 721, 1091
Bst6I CTCTTC 3 cut(s) 405, 1066, 1276
BstACI GRCGYC 1 cut(s) 282
BstAFI CTTAAG 1 cut(s) 449
BstAPI GCANNNNNTGC 3 cut(s) 1061, 1244, 1562
BstBAI YACGTR 1 cut(s) 1291
BstC8I GCNNGC 7 cut(s) 6, 183, 280, 958, 1230, 1321, 1533
BstDEI CTNAG 5 cut(s) 693, 885, 1020, 1383, 1473
BstDSI CCRYGG 1 cut(s) 292
BstF5I GGATG 7 cut(s) 386, 426, 985, 1308, 1330, 1556, 1615
BstFNI CGCG 2 cut(s) 185, 196
BstH2I RGCGCY 1 cut(s) 300
BstHHI GCGC 2 cut(s) 299, 1152
BstKTI GATC 8 cut(s) 50, 99, 508, 862, 883, 966, 1506, 1594
BstMAI GTCTC 2 cut(s) 125, 1278
BstMBI GATC 8 cut(s) 47, 96, 505, 859, 880, 963, 1503, 1591
BstNI CCWGG 2 cut(s) 602, 873
BstNSI RCATGY 3 cut(s) 369, 1535, 1676
BstSCI CCNGG 2 cut(s) 600, 871
BstSFI CTRYAG 1 cut(s) 1536
BstSLI GKGCMC 2 cut(s) 608, 1249
BstUI CGCG 2 cut(s) 185, 196
BstV1I GCAGC 8 cut(s) 60, 101, 286, 488, 1064, 1250, 1328, 1522
BstV2I GAAGAC 1 cut(s) 722
BstX2I RGATCY 2 cut(s) 1503, 1591
BstYI RGATCY 2 cut(s) 1503, 1591
BstZ17I GTATAC 1 cut(s) 819
Bsu36I CCTNAGG 1 cut(s) 693
BtgI CCRYGG 1 cut(s) 292
BtsCI GGATG 7 cut(s) 386, 426, 985, 1308, 1330, 1556, 1615
BtsI GCAGTG 1 cut(s) 414
BtsIMutI CAGTG 4 cut(s) 414, 669, 814, 1266
BveI ACCTGC 1 cut(s) 457
Cac8I GCNNGC 7 cut(s) 6, 183, 280, 958, 1230, 1321, 1533
CaiI CAGNNNCTG 1 cut(s) 479
CfoI GCGC 2 cut(s) 299, 1152
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 4 cut(s) 198, 604, 605, 1441
CseI GACGC 2 cut(s) 271, 1019
Csp6I GTAC 1 cut(s) 594
CviAII CATG 7 cut(s) 366, 509, 737, 1153, 1532, 1610, 1673
CviQI GTAC 1 cut(s) 594
DdeI CTNAG 5 cut(s) 693, 885, 1020, 1383, 1473
DpnI GATC 8 cut(s) 49, 98, 507, 861, 882, 965, 1505, 1593
DpnII GATC 8 cut(s) 47, 96, 505, 859, 880, 963, 1503, 1591
DraIII CACNNNGTG 1 cut(s) 1127
EaeI YGGCCR 3 cut(s) 154, 289, 501
Eam1104I CTCTTC 3 cut(s) 405, 1066, 1276
EarI CTCTTC 3 cut(s) 405, 1066, 1276
Eco130I CCWWGG 1 cut(s) 1507
Eco147I AGGCCT 2 cut(s) 8, 134
Eco24I GRGCYC 3 cut(s) 608, 1078, 1365
Eco31I GGTCTC 2 cut(s) 125, 1278
Eco47I GGWCC 1 cut(s) 198
Eco57I CTGAAG 1 cut(s) 1650
Eco72I CACGTG 1 cut(s) 1291
Eco81I CCTNAGG 1 cut(s) 693
EcoO109I RGGNCCY 2 cut(s) 605, 1441
EcoRII CCWGG 2 cut(s) 600, 871
EcoT14I CCWWGG 1 cut(s) 1507
EcoT38I GRGCYC 3 cut(s) 608, 1078, 1365
ErhI CCWWGG 1 cut(s) 1507
FaeI CATG 7 cut(s) 369, 512, 740, 1156, 1535, 1613, 1676
FalI AAGNNNNNCTT 4 cut(s) 387, 419, 1406, 1438
FaqI GGGAC 1 cut(s) 1479
FatI CATG 7 cut(s) 365, 508, 736, 1152, 1531, 1609, 1672
FauI CCCGC 2 cut(s) 417, 1321
FblI GTMKAC 1 cut(s) 818
FokI GGATG 7 cut(s) 393, 433, 992, 1295, 1317, 1543, 1602
FriOI GRGCYC 3 cut(s) 608, 1078, 1365
FspBI CTAG 3 cut(s) 540, 1040, 1680
GlaI GCGC 2 cut(s) 298, 1151
GsaI CCCAGC 1 cut(s) 974
GsuI CTGGAG 1 cut(s) 966
HaeII RGCGCY 1 cut(s) 300
HapII CCGG 3 cut(s) 124, 279, 1068
HgaI GACGC 2 cut(s) 271, 1019
HhaI GCGC 2 cut(s) 299, 1152
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 7 cut(s) 369, 512, 740, 1156, 1535, 1613, 1676
Hin6I GCGC 2 cut(s) 297, 1150
HinP1I GCGC 2 cut(s) 297, 1150
HindIII AAGCTT 2 cut(s) 852, 1420
HinfI GANTC 2 cut(s) 164, 752
HpaII CCGG 3 cut(s) 124, 279, 1068
HphI GGTGA 6 cut(s) 437, 628, 958, 1181, 1217, 1318
Hpy166II GTNNAC 5 cut(s) 69, 373, 574, 819, 1247
Hpy188I TCNGA 7 cut(s) 163, 226, 243, 275, 327, 420, 1630
Hpy188III TCNNGA 7 cut(s) 316, 761, 884, 1040, 1334, 1550, 1589
Hpy8I GTNNAC 5 cut(s) 69, 373, 574, 819, 1247
Hpy99I CGWCG 3 cut(s) 62, 287, 317
HpyAV CCTTC 6 cut(s) 145, 199, 313, 921, 1381, 1451
HpyCH4III ACNGT 3 cut(s) 173, 721, 1091
HpyCH4IV ACGT 3 cut(s) 57, 1126, 1290
HpyF3I CTNAG 5 cut(s) 693, 885, 1020, 1383, 1473
HpySE526I ACGT 3 cut(s) 57, 1126, 1290
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 7 cut(s) 369, 512, 740, 1156, 1535, 1613, 1676
HspAI GCGC 2 cut(s) 297, 1150
KroI GCCGGC 1 cut(s) 278
KroNI GCCGGC 1 cut(s) 280
Kzo9I GATC 8 cut(s) 47, 96, 505, 859, 880, 963, 1503, 1591
LguI GCTCTTC 2 cut(s) 405, 1066
LmnI GCTCC 4 cut(s) 88, 275, 427, 626
Lsp1109I GCAGC 8 cut(s) 60, 101, 286, 488, 1064, 1250, 1328, 1522
LweI GCATC 8 cut(s) 411, 533, 1039, 1156, 1198, 1215, 1317, 1565
MaeI CTAG 3 cut(s) 540, 1040, 1680
MaeII ACGT 3 cut(s) 57, 1126, 1290
MaeIII GTNAC 5 cut(s) 643, 731, 788, 838, 1273
MalI GATC 8 cut(s) 49, 98, 507, 861, 882, 965, 1505, 1593
MboI GATC 8 cut(s) 47, 96, 505, 859, 880, 963, 1503, 1591
MboII GAAGA 4 cut(s) 392, 727, 1083, 1293
MflI RGATCY 2 cut(s) 1503, 1591
MhlI GDGCHC 5 cut(s) 608, 1078, 1249, 1296, 1365
MluCI AATT 5 cut(s) 550, 746, 1005, 1059, 1178
MlyI GAGTC 2 cut(s) 158, 761
MmeI TCCRAC 5 cut(s) 186, 398, 604, 760, 1330
MroNI GCCGGC 1 cut(s) 278
MroXI GAANNNNTTC 1 cut(s) 248
MseI TTAA 3 cut(s) 450, 1058, 1665
MslI CAYNNNNRTG 1 cut(s) 1259
MspA1I CMGCKG 1 cut(s) 479
MspCI CTTAAG 1 cut(s) 449
MspI CCGG 3 cut(s) 124, 279, 1068
MspR9I CCNGG 2 cut(s) 602, 873
Mva1269I GAATGC 1 cut(s) 1584
MvaI CCWGG 2 cut(s) 602, 873
MvnI CGCG 2 cut(s) 185, 196
NaeI GCCGGC 1 cut(s) 280
NdeII GATC 8 cut(s) 47, 96, 505, 859, 880, 963, 1503, 1591
NgoMIV GCCGGC 1 cut(s) 278
NlaIII CATG 7 cut(s) 369, 512, 740, 1156, 1535, 1613, 1676
NlaIV GGNNCC 4 cut(s) 277, 606, 1026, 1185
NmeAIII GCCGAG 1 cut(s) 132
NmuCI GTSAC 2 cut(s) 731, 1273
NspI RCATGY 3 cut(s) 369, 1535, 1676
PaeI GCATGC 1 cut(s) 1535
PceI AGGCCT 2 cut(s) 8, 134
PciI ACATGT 1 cut(s) 365
PciSI GCTCTTC 2 cut(s) 405, 1066
PcsI WCGNNNNNNNCGW 2 cut(s) 159, 279
PctI GAATGC 1 cut(s) 1584
PdiI GCCGGC 1 cut(s) 280
PdmI GAANNNNTTC 1 cut(s) 248
PleI GAGTC 2 cut(s) 158, 760
PmaCI CACGTG 1 cut(s) 1291
PmlI CACGTG 1 cut(s) 1291
PpsI GAGTC 2 cut(s) 158, 760
Ppu21I YACGTR 1 cut(s) 1291
PscI ACATGT 1 cut(s) 365
PshBI ATTAAT 1 cut(s) 1058
Psp6I CCWGG 2 cut(s) 600, 871
PspCI CACGTG 1 cut(s) 1291
PspFI CCCAGC 1 cut(s) 970
PspGI CCWGG 2 cut(s) 600, 871
PspN4I GGNNCC 4 cut(s) 277, 606, 1026, 1185
PspOMI GGGCCC 1 cut(s) 604
PspPI GGNCC 4 cut(s) 198, 604, 605, 1441
PstI CTGCAG 1 cut(s) 1540
PstNI CAGNNNCTG 1 cut(s) 479
PsuI RGATCY 2 cut(s) 1503, 1591
PvuII CAGCTG 1 cut(s) 479
RsaI GTAC 1 cut(s) 595
RsaNI GTAC 1 cut(s) 594
RseI CAYNNNNRTG 1 cut(s) 1259
SapI GCTCTTC 2 cut(s) 405, 1066
SaqAI TTAA 3 cut(s) 450, 1058, 1665
Sau3AI GATC 8 cut(s) 47, 96, 505, 859, 880, 963, 1503, 1591
Sau96I GGNCC 4 cut(s) 198, 604, 605, 1441
SchI GAGTC 2 cut(s) 158, 761
ScrFI CCNGG 2 cut(s) 602, 873
SduI GDGCHC 5 cut(s) 608, 1078, 1249, 1296, 1365
SfaNI GCATC 8 cut(s) 411, 533, 1039, 1156, 1198, 1215, 1317, 1565
SfcI CTRYAG 1 cut(s) 1536
SinI GGWCC 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 1259
SmlI CTYRAG 3 cut(s) 449, 800, 1686
SmoI CTYRAG 3 cut(s) 449, 800, 1686
SphI GCATGC 1 cut(s) 1535
Sse9I AATT 5 cut(s) 550, 746, 1005, 1059, 1178
SseBI AGGCCT 2 cut(s) 8, 134
SspI AATATT 1 cut(s) 1108
SspMI CTAG 3 cut(s) 540, 1040, 1680
StuI AGGCCT 2 cut(s) 8, 134
StyD4I CCNGG 2 cut(s) 600, 871
StyI CCWWGG 1 cut(s) 1507
TaaI ACNGT 3 cut(s) 173, 721, 1091
TaiI ACGT 3 cut(s) 60, 1129, 1293
TaqI TCGA 3 cut(s) 252, 315, 708
TasI AATT 5 cut(s) 550, 746, 1005, 1059, 1178
TauI GCSGC 4 cut(s) 188, 191, 218, 291
Tru1I TTAA 3 cut(s) 450, 1058, 1665
Tru9I TTAA 3 cut(s) 450, 1058, 1665
TscAI CASTG 4 cut(s) 414, 676, 814, 1266
TseFI GTSAC 2 cut(s) 731, 1273
TseI GCWGC 8 cut(s) 73, 114, 299, 476, 1052, 1238, 1316, 1535
Tsp45I GTSAC 2 cut(s) 731, 1273
TspDTI ATGAA 5 cut(s) 453, 572, 1470, 1505, 1656
TspGWI ACGGA 2 cut(s) 524, 1512
TspRI CASTG 4 cut(s) 414, 676, 814, 1266
Vha464I CTTAAG 1 cut(s) 449
VneI GTGCAC 1 cut(s) 1245
VpaK11BI GGWCC 1 cut(s) 198
VspI ATTAAT 1 cut(s) 1058
XbaI TCTAGA 1 cut(s) 1039
XceI RCATGY 3 cut(s) 369, 1535, 1676
XmiI GTMKAC 1 cut(s) 818
XmnI GAANNNNTTC 1 cut(s) 248
XspI CTAG 3 cut(s) 540, 1040, 1680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.