Rroxscaffold_5G00373330

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0017652
Physical Location & Seq
Forward (+)
54599580 .. 54606943
7364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00373330.1

Sequence Viewer

Length: 1980 bp
ATGGCATCTGGTTTCTATGTGCAACCTTGTGAAGTCTATGGCAATAACAAATGTGATGAGTTTATTGGTCTTGATCTCAATCTCTCATCCATGTCATGCCTTCCCTTCCCTTCTCTTTCGACTCTGGAGAACAATTCTGCTGTCTGGGAGATTCCGTTCATAGATGAAACAAGAAATCATAAGAGGGTAAAACTTGAAGATAGTGCCGATGAATCCATTATAAGTACTAATTATAGTCTTTACAGTGGCAGTGCCAGTGGCAGCATGTATACTAGTGGCTTCAATAGCTTGTCAAGAATTCAATTCCGGGATCACATATCAGCTTACACCCGGAGATACTTGGCAGCAGAGAAAATGGAAGAAGCAGCTTCAACCTTGTTGGGGGGCGAGCCGGAGGAAGAAGGAAGTGGAGATGGAATGAAACTAGTTCAAAAGCTCATTTCGTGCGCTGAGGCTGTGGCTTGTCGTGACAAAACTCATGCTTCAGCATTGCTTTCTGAGCTTAGAACTAATGCCCAGGTCTTTGGGACATCATTCCAGCGAGTAGCTTCCTGCTTTATCCAAGCTCTCTCTGACCGTCTTGCTCTCGTTCAACCACTGGGGGCTGTGGGAGTTACAACAAAGATGATTGCTGTTTCATCAGAGAAGGATGAGGCTTTGCACCTTGTTTATGAGATTTGCCCACATATCCAGTTTAGTCATTTTGTAGCAAACACATCAATATTGGAAGCCTTTGAGGGGGAGAGCGATGTTCATGTCATAGACTTGGGCATGACCCTAGGCCTCCTTCATGGCTACCAATGGCTCAACTTGATGGACAGTCTAGCCAGCCGAACAGGACAACCCTTACGCCGGCTTCGAATAACTGGTGTTGGTGACTCTGGTGAACGCCTTGAAGCGATTGGTAATGAACTAAAGTTGTATGCACAAAGCATGGCGCTGGATTTTGGATTTTTAGCAGTGGAAAGCAACTTGGAAAACCTGAAGGCCGAAGATTTCAATCTCATTGATGGGGAGGTTTTAGTCATCAATAGCATACTCCAGCTGCATTGTCTTGTGAAAGAAAGTAGAGGAGCATTGAACTCGGTTCTACAAACACTATATGACCTATCACCAAAGCTAATGGTTCTAGTTGAGCAGGACTCGAGCCACAATGGGCCTTTCTTTCTTGGGAGGTTCATGGAGGCATTACATAATTACTCTGCCATCTTCGACTCCTTAGATGCAATGCTGCCCAGATATGACACAAGGAGAGCTAAAATGGAGCAGTTTTATTTCGGAGAGGAGATTAAGAACATAGTAAGCTGCGAGGGACCTGCGAGAGTGGAGCGGCACGAAAGAGTTGATCAATGGCGCAGGAGGATGAGGCGCTCTGGGTTCCAACCGGCACCCCTGAAGATGATTACGCAGGCTACAAAATGGCTAGAAATGAACGCTAGTGAGGGTTACACAATTGTGGAAGACAAGGGTTGCTTTGTTCTTGGAGTAGGGTCTGGTATCAAGGCAGACTTGAAAGGGAATGGTGTAGTTAGAGGGAGGACTTGCTTCCCAGAGTCGGTCCGTTGTCGAGCGGCGGTGGGAGCCGTGGAGCAAGATCGTGTTCGGATCCAACGGGCGAAGGATCCGGATCCGGGATCCGGTGGGTGTTGCAATGGATCCGTATCCGGGATCCAGTGGGATTTAGGCTTGGACCGCGCCCATTATCTTTGTTGGGCTATTTGTCATTTGCTTGAATGGCTTGGGGCTCCTCTCGTGTTATTGGTGGCCACATCATATCAGCAGCTTCCCATGTGGGCCCCGGCATCTCCTATCCCATGCATTATGGGATGCCACGTGTATGGCGGCAAAGCAACTGTCCATCGGAATCGAAAACCAGAGTCTGAAGAAGAAGCTGTGGATAAGACCTTAAAGGTTTCACTGGGACATTTCCAGCGAGCTCTTTTTTCTGAAAAACCAAGACTCTCAGCAAAATCGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

659

Amino Acids

72.93

Weight (kDa)

5.79

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 142 - 495 3.2e-102 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017652)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24820
malus_domestica MD13G1108700.v1.1
prunus_persica Prupe.1G237500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0431901
rosa_laevigata RLG00000006877
rosa_roxburghii Rroxscaffold_5G00373330
rosa_rugosa Rorug04G0252900
rosa_samantha Rh4AG310100 Rh4BG317200 Rh4CG332500 Rh4DG312100
rosa_wichuraiana Rw4G026980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 221
Acc36I ACCTGC 1 cut(s) 1324
AccB1I GGYRCC 1 cut(s) 1387
AccBSI CCGCTC 2 cut(s) 1330, 1571
AccI GTMKAC 1 cut(s) 269
AccII CGCG 1 cut(s) 1695
AccIII TCCGGA 1 cut(s) 1624
AciI CCGC 5 cut(s) 1330, 1571, 1574, 1693, 1842
AcoI YGGCCR 1 cut(s) 1764
AcsI RAATTY 1 cut(s) 297
AcuI CTGAAG 4 cut(s) 468, 1004, 1415, 1902
AcvI CACGTG 1 cut(s) 1834
AfaI GTAC 1 cut(s) 226
AfiI CCNNNNNNNGG 7 cut(s) 381, 738, 852, 1555, 1631, 1637, 1665
AflIII ACRYGT 1 cut(s) 1833
AhlI ACTAGT 2 cut(s) 272, 424
AjnI CCWGG 1 cut(s) 516
AleI CACNNNNGTG 1 cut(s) 1454
AloI GAACNNNNNNTCC 2 cut(s) 140, 172
Alw21I GWGCWC 1 cut(s) 1939
AlwNI CAGNNNCTG 1 cut(s) 1880
Ama87I CYCGRG 1 cut(s) 1144
Aor13HI TCCGGA 1 cut(s) 1624
AoxI GGCC 5 cut(s) 781, 987, 1157, 1764, 1794
ApaI GGGCCC 1 cut(s) 1798
ApeKI GCWGC 7 cut(s) 261, 344, 365, 1045, 1231, 1305, 1780
ApoI RAATTY 1 cut(s) 297
ArsI GACNNNNNNTTYG 2 cut(s) 1839, 1871
AspA2I CCTAGG 1 cut(s) 778
AspLEI GCGC 5 cut(s) 449, 940, 1356, 1371, 1697
AspS9I GGNCC 6 cut(s) 1157, 1313, 1558, 1690, 1794, 1795
AsuC2I CCSGG 5 cut(s) 308, 331, 1632, 1666, 1799
AsuHPI GGTGA 3 cut(s) 887, 896, 1104
AsuII TTCGAA 1 cut(s) 859
AvaI CYCGRG 1 cut(s) 1144
AvaII GGWCC 3 cut(s) 1313, 1558, 1690
AvrII CCTAGG 1 cut(s) 778
BaeGI GKGCMC 1 cut(s) 1798
BalI TGGCCA 1 cut(s) 1766
BamHI GGATCC 6 cut(s) 1605, 1621, 1627, 1634, 1655, 1668
BanI GGYRCC 1 cut(s) 1387
BanII GRGCYC 3 cut(s) 1747, 1798, 1939
BauI CACGAG 1 cut(s) 1751
BbrPI CACGTG 1 cut(s) 1834
BbsI GAAGAC 1 cut(s) 1467
Bbv12I GWGCWC 1 cut(s) 1939
BbvCI CCTCAGC 1 cut(s) 450
BbvI GCAGC 7 cut(s) 273, 356, 377, 1032, 1218, 1292, 1792
BccI CCATC 5 cut(s) 407, 808, 1004, 1214, 1866
BceAI ACGGC 1 cut(s) 1568
BcgI CGANNNNNNTGC 4 cut(s) 1065, 1099, 1298, 1332
BciT130I CCWGG 1 cut(s) 518
BciVI GTATCC 1 cut(s) 1672
BclI TGATCA 1 cut(s) 1345
BcnI CCSGG 5 cut(s) 308, 331, 1632, 1666, 1799
BcuI ACTAGT 2 cut(s) 272, 424
BfaI CTAG 7 cut(s) 273, 425, 779, 824, 1130, 1424, 1437
BfoI RGCGCY 2 cut(s) 941, 1372
BfuAI ACCTGC 1 cut(s) 1324
BfuI GTATCC 1 cut(s) 1672
BlnI CCTAGG 1 cut(s) 778
BmcAI AGTACT 1 cut(s) 226
Bme1390I CCNGG 6 cut(s) 308, 331, 518, 1632, 1666, 1799
Bme18I GGWCC 3 cut(s) 1313, 1558, 1690
BmeT110I CYCGRG 1 cut(s) 1144
BmgT120I GGNCC 6 cut(s) 1157, 1313, 1558, 1690, 1794, 1795
BmrFI CCNGG 6 cut(s) 308, 331, 518, 1632, 1666, 1799
BmrI ACTGGG 2 cut(s) 608, 1928
BmsI GCATC 4 cut(s) 14, 1213, 1811, 1817
BmuI ACTGGG 2 cut(s) 608, 1928
BpiI GAAGAC 1 cut(s) 1467
BplI GAGNNNNNCTC 2 cut(s) 1127, 1159
BpmI CTGGAG 2 cut(s) 146, 1025
Bpu10I CCTNAGC 1 cut(s) 450
Bpu14I TTCGAA 1 cut(s) 859
BpuMI CCSGG 5 cut(s) 308, 331, 1632, 1666, 1799
BsaAI YACGTR 1 cut(s) 1834
BsaBI GATNNNNATC 4 cut(s) 78, 999, 1626, 1660
BsaJI CCNNGG 4 cut(s) 516, 778, 1584, 1797
BsaWI WCCGGW 2 cut(s) 1624, 1637
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 7 cut(s) 381, 738, 852, 1555, 1631, 1637, 1665
Bse118I RCCGGY 2 cut(s) 852, 1384
Bse1I ACTGG 6 cut(s) 255, 603, 691, 871, 1672, 1923
Bse3DI GCAATG 3 cut(s) 488, 1233, 1657
Bse8I GATNNNNATC 4 cut(s) 78, 999, 1626, 1660
BseAI TCCGGA 1 cut(s) 1624
BseBI CCWGG 1 cut(s) 518
BseDI CCNNGG 4 cut(s) 516, 778, 1584, 1797
BseGI GGATG 4 cut(s) 86, 655, 1368, 1832
BseJI GATNNNNATC 4 cut(s) 78, 999, 1626, 1660
BseLI CCNNNNNNNGG 7 cut(s) 381, 738, 852, 1555, 1631, 1637, 1665
BseMI GCAATG 3 cut(s) 488, 1233, 1657
BseMII CTCAG 3 cut(s) 441, 489, 1977
BseNI ACTGG 6 cut(s) 255, 603, 691, 871, 1672, 1923
BseRI GAGGAG 3 cut(s) 1086, 1298, 1737
BseSI GKGCMC 1 cut(s) 1798
BseXI GCAGC 7 cut(s) 273, 356, 377, 1032, 1218, 1292, 1792
Bsh1236I CGCG 1 cut(s) 1695
BshFI GGCC 5 cut(s) 783, 989, 1159, 1766, 1796
BshNI GGYRCC 1 cut(s) 1387
BsiHKAI GWGCWC 1 cut(s) 1939
BsiHKCI CYCGRG 1 cut(s) 1144
BslFI GGGAC 3 cut(s) 541, 1326, 1935
BslI CCNNNNNNNGG 7 cut(s) 381, 738, 852, 1555, 1631, 1637, 1665
BsmFI GGGAC 3 cut(s) 541, 1326, 1935
BsnI GGCC 5 cut(s) 783, 989, 1159, 1766, 1796
BsoBI CYCGRG 1 cut(s) 1144
Bsp119I TTCGAA 1 cut(s) 859
Bsp120I GGGCCC 1 cut(s) 1794
Bsp1286I GDGCHC 3 cut(s) 1747, 1798, 1939
Bsp13I TCCGGA 1 cut(s) 1624
BspACI CCGC 5 cut(s) 1330, 1571, 1574, 1693, 1842
BspANI GGCC 5 cut(s) 783, 989, 1159, 1766, 1796
BspCNI CTCAG 3 cut(s) 442, 490, 1976
BspEI TCCGGA 1 cut(s) 1624
BspFNI CGCG 1 cut(s) 1695
BspMI ACCTGC 1 cut(s) 1324
BspT104I TTCGAA 1 cut(s) 859
BspT107I GGYRCC 1 cut(s) 1387
BsrBI CCGCTC 2 cut(s) 1330, 1571
BsrDI GCAATG 3 cut(s) 488, 1233, 1657
BsrFI RCCGGY 2 cut(s) 852, 1384
BsrI ACTGG 6 cut(s) 255, 603, 691, 871, 1672, 1923
BssAI RCCGGY 2 cut(s) 852, 1384
BssECI CCNNGG 4 cut(s) 516, 778, 1584, 1797
BssNAI GTATAC 1 cut(s) 270
BssSI CACGAG 1 cut(s) 1751
BssT1I CCWWGG 1 cut(s) 778
Bst1107I GTATAC 1 cut(s) 270
Bst2BI CACGAG 1 cut(s) 1751
Bst2UI CCWGG 1 cut(s) 518
Bst4CI ACNGT 4 cut(s) 245, 578, 821, 1855
BstBAI YACGTR 1 cut(s) 1834
BstBI TTCGAA 1 cut(s) 859
BstC8I GCNNGC 5 cut(s) 389, 829, 854, 1410, 1935
BstDEI CTNAG 5 cut(s) 450, 498, 503, 1219, 1963
BstDSI CCRYGG 1 cut(s) 1584
BstF5I GGATG 4 cut(s) 86, 655, 1368, 1832
BstFNI CGCG 1 cut(s) 1695
BstH2I RGCGCY 2 cut(s) 941, 1372
BstHHI GCGC 5 cut(s) 449, 940, 1356, 1371, 1697
BstMWI GCNNNNNNNGC 5 cut(s) 285, 499, 1580, 1692, 1735
BstNI CCWGG 1 cut(s) 518
BstNSI RCATGY 1 cut(s) 268
BstSCI CCNGG 6 cut(s) 306, 329, 516, 1630, 1664, 1797
BstSLI GKGCMC 1 cut(s) 1798
BstUI CGCG 1 cut(s) 1695
BstV1I GCAGC 7 cut(s) 273, 356, 377, 1032, 1218, 1292, 1792
BstV2I GAAGAC 1 cut(s) 1467
BstX2I RGATCY 6 cut(s) 1605, 1621, 1627, 1634, 1655, 1668
BstXI CCANNNNNNTGG 2 cut(s) 524, 1838
BstYI RGATCY 6 cut(s) 1605, 1621, 1627, 1634, 1655, 1668
BstZ17I GTATAC 1 cut(s) 270
BsuI GTATCC 1 cut(s) 1672
BsuRI GGCC 5 cut(s) 783, 989, 1159, 1766, 1796
BtgI CCRYGG 1 cut(s) 1584
BtgZI GCGATG 1 cut(s) 762
BtsCI GGATG 4 cut(s) 86, 655, 1368, 1832
BtsI GCAGTG 2 cut(s) 256, 966
BtsIMutI CAGTG 7 cut(s) 250, 256, 262, 596, 966, 1679, 1916
BveI ACCTGC 1 cut(s) 1324
Cac8I GCNNGC 5 cut(s) 389, 829, 854, 1410, 1935
CaiI CAGNNNCTG 1 cut(s) 1880
CfoI GCGC 5 cut(s) 449, 940, 1356, 1371, 1697
Cfr10I RCCGGY 2 cut(s) 852, 1384
Cfr13I GGNCC 6 cut(s) 1157, 1313, 1558, 1690, 1794, 1795
CpoI CGGWCCG 1 cut(s) 1558
Csp6I GTAC 1 cut(s) 225
CspI CGGWCCG 1 cut(s) 1558
CviQI GTAC 1 cut(s) 225
DdeI CTNAG 5 cut(s) 450, 498, 503, 1219, 1963
EaeI YGGCCR 1 cut(s) 1764
Ecl136II GAGCTC 1 cut(s) 1937
Eco130I CCWWGG 1 cut(s) 778
Eco147I AGGCCT 1 cut(s) 783
Eco24I GRGCYC 3 cut(s) 1747, 1798, 1939
Eco47I GGWCC 3 cut(s) 1313, 1558, 1690
Eco53kI GAGCTC 1 cut(s) 1937
Eco57I CTGAAG 4 cut(s) 468, 1004, 1415, 1902
Eco72I CACGTG 1 cut(s) 1834
Eco88I CYCGRG 1 cut(s) 1144
EcoICRI GAGCTC 1 cut(s) 1937
EcoO109I RGGNCCY 2 cut(s) 1313, 1795
EcoRI GAATTC 1 cut(s) 297
EcoRII CCWGG 1 cut(s) 516
EcoT14I CCWWGG 1 cut(s) 778
EcoT22I ATGCAT 1 cut(s) 1820
EcoT38I GRGCYC 3 cut(s) 1747, 1798, 1939
ErhI CCWWGG 1 cut(s) 778
FalI AAGNNNNNCTT 4 cut(s) 1457, 1489, 1493, 1525
FaqI GGGAC 3 cut(s) 541, 1326, 1935
FbaI TGATCA 1 cut(s) 1345
FblI GTMKAC 1 cut(s) 269
FokI GGATG 4 cut(s) 73, 662, 1375, 1839
FriOI GRGCYC 3 cut(s) 1747, 1798, 1939
FspBI CTAG 7 cut(s) 273, 425, 779, 824, 1130, 1424, 1437
GlaI GCGC 5 cut(s) 448, 939, 1355, 1370, 1696
GsuI CTGGAG 2 cut(s) 146, 1025
HaeII RGCGCY 2 cut(s) 941, 1372
HaeIII GGCC 5 cut(s) 783, 989, 1159, 1766, 1796
HhaI GCGC 5 cut(s) 449, 940, 1356, 1371, 1697
Hin6I GCGC 5 cut(s) 447, 938, 1354, 1369, 1695
HinP1I GCGC 5 cut(s) 447, 938, 1354, 1369, 1695
HphI GGTGA 3 cut(s) 887, 896, 1104
Hpy166II GTNNAC 2 cut(s) 270, 887
Hpy188I TCNGA 8 cut(s) 499, 574, 643, 1280, 1605, 1863, 1882, 1948
Hpy188III TCNNGA 5 cut(s) 71, 125, 294, 467, 1625
Hpy8I GTNNAC 2 cut(s) 270, 887
HpyAV CCTTC 8 cut(s) 110, 115, 120, 395, 640, 797, 979, 1612
HpyCH4III ACNGT 4 cut(s) 245, 578, 821, 1855
HpyCH4IV ACGT 1 cut(s) 1833
HpyCH4V TGCA 7 cut(s) 22, 661, 926, 1048, 1226, 1650, 1818
HpyF10VI GCNNNNNNNGC 5 cut(s) 285, 499, 1580, 1692, 1735
HpyF3I CTNAG 5 cut(s) 450, 498, 503, 1219, 1963
HpySE526I ACGT 1 cut(s) 1833
HspAI GCGC 5 cut(s) 447, 938, 1354, 1369, 1695
Kpn2I TCCGGA 1 cut(s) 1624
KroI GCCGGC 1 cut(s) 852
KroNI GCCGGC 1 cut(s) 854
Ksp22I TGATCA 1 cut(s) 1345
LmnI GCTCC 6 cut(s) 1073, 1264, 1327, 1580, 1588, 1750
Lsp1109I GCAGC 7 cut(s) 273, 356, 377, 1032, 1218, 1292, 1792
LweI GCATC 4 cut(s) 14, 1213, 1811, 1817
MaeI CTAG 7 cut(s) 273, 425, 779, 824, 1130, 1424, 1437
MaeII ACGT 1 cut(s) 1833
MaeIII GTNAC 4 cut(s) 467, 613, 875, 1445
MbiI CCGCTC 2 cut(s) 1330, 1571
MboII GAAGA 9 cut(s) 209, 371, 410, 1004, 1201, 1408, 1472, 1895, 1898
MfeI CAATTG 1 cut(s) 1452
MflI RGATCY 6 cut(s) 1605, 1621, 1627, 1634, 1655, 1668
MhlI GDGCHC 3 cut(s) 1747, 1798, 1939
MlsI TGGCCA 1 cut(s) 1766
MluCI AATT 6 cut(s) 133, 229, 297, 302, 1195, 1452
MluNI TGGCCA 1 cut(s) 1766
MlyI GAGTC 7 cut(s) 115, 872, 1136, 1208, 1562, 1886, 1953
MmeI TCCRAC 2 cut(s) 1405, 1633
Mox20I TGGCCA 1 cut(s) 1766
Mph1103I ATGCAT 1 cut(s) 1820
MroI TCCGGA 1 cut(s) 1624
MroNI GCCGGC 1 cut(s) 852
MscI TGGCCA 1 cut(s) 1766
MseI TTAA 2 cut(s) 1290, 1907
MslI CAYNNNNRTG 2 cut(s) 1454, 1836
Msp20I TGGCCA 1 cut(s) 1766
MspA1I CMGCKG 1 cut(s) 1045
MspR9I CCNGG 6 cut(s) 308, 331, 518, 1632, 1666, 1799
MunI CAATTG 1 cut(s) 1452
MvaI CCWGG 1 cut(s) 518
MvnI CGCG 1 cut(s) 1695
MwoI GCNNNNNNNGC 5 cut(s) 285, 499, 1580, 1692, 1735
NaeI GCCGGC 1 cut(s) 854
NciI CCSGG 5 cut(s) 308, 331, 1632, 1666, 1799
NgoMIV GCCGGC 1 cut(s) 852
NmuCI GTSAC 2 cut(s) 467, 875
NsiI ATGCAT 1 cut(s) 1820
NspI RCATGY 1 cut(s) 268
NspV TTCGAA 1 cut(s) 859
OliI CACNNNNGTG 1 cut(s) 1454
PaeR7I CTCGAG 1 cut(s) 1144
PceI AGGCCT 1 cut(s) 783
PcsI WCGNNNNNNNCGW 1 cut(s) 856
PdiI GCCGGC 1 cut(s) 854
PfeI GAWTC 3 cut(s) 151, 212, 1864
PfoI TCCNGGA 3 cut(s) 306, 1630, 1664
PleI GAGTC 7 cut(s) 115, 872, 1136, 1208, 1561, 1885, 1953
PmaCI CACGTG 1 cut(s) 1834
PmlI CACGTG 1 cut(s) 1834
PpsI GAGTC 7 cut(s) 115, 872, 1136, 1208, 1561, 1885, 1953
Ppu21I YACGTR 1 cut(s) 1834
PpuMI RGGWCCY 1 cut(s) 1313
PsiI TTATAA 1 cut(s) 221
Psp124BI GAGCTC 1 cut(s) 1939
Psp5II RGGWCCY 1 cut(s) 1313
Psp6I CCWGG 1 cut(s) 516
PspCI CACGTG 1 cut(s) 1834
PspGI CCWGG 1 cut(s) 516
PspOMI GGGCCC 1 cut(s) 1794
PspPI GGNCC 6 cut(s) 1157, 1313, 1558, 1690, 1794, 1795
PspPPI RGGWCCY 1 cut(s) 1313
PspXI VCTCGAGB 1 cut(s) 1144
PstNI CAGNNNCTG 1 cut(s) 1880
PsuI RGATCY 6 cut(s) 1605, 1621, 1627, 1634, 1655, 1668
PvuII CAGCTG 1 cut(s) 1045
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
RseI CAYNNNNRTG 2 cut(s) 1454, 1836
Rsr2I CGGWCCG 1 cut(s) 1558
RsrII CGGWCCG 1 cut(s) 1558
SacI GAGCTC 1 cut(s) 1939
SaqAI TTAA 2 cut(s) 1290, 1907
Sau96I GGNCC 6 cut(s) 1157, 1313, 1558, 1690, 1794, 1795
ScaI AGTACT 1 cut(s) 226
SchI GAGTC 7 cut(s) 115, 872, 1136, 1208, 1562, 1886, 1953
ScrFI CCNGG 6 cut(s) 308, 331, 518, 1632, 1666, 1799
SduI GDGCHC 3 cut(s) 1747, 1798, 1939
SfaNI GCATC 4 cut(s) 14, 1213, 1811, 1817
Sfr274I CTCGAG 1 cut(s) 1144
SfuI TTCGAA 1 cut(s) 859
SinI GGWCC 3 cut(s) 1313, 1558, 1690
SlaI CTCGAG 1 cut(s) 1144
SmiMI CAYNNNNRTG 2 cut(s) 1454, 1836
SmlI CTYRAG 1 cut(s) 1144
SmoI CTYRAG 1 cut(s) 1144
SpeI ACTAGT 2 cut(s) 272, 424
Sse9I AATT 6 cut(s) 133, 229, 297, 302, 1195, 1452
SseBI AGGCCT 1 cut(s) 783
SsiI CCGC 5 cut(s) 1330, 1571, 1574, 1693, 1842
SspI AATATT 1 cut(s) 723
SspMI CTAG 7 cut(s) 273, 425, 779, 824, 1130, 1424, 1437
SstI GAGCTC 1 cut(s) 1939
StuI AGGCCT 1 cut(s) 783
StyD4I CCNGG 6 cut(s) 306, 329, 516, 1630, 1664, 1797
StyI CCWWGG 1 cut(s) 778
TaaI ACNGT 4 cut(s) 245, 578, 821, 1855
TaiI ACGT 1 cut(s) 1836
TaqI TCGA 7 cut(s) 119, 859, 1145, 1212, 1567, 1867, 1973
TaqII GACCGA 1 cut(s) 1546
TasI AATT 6 cut(s) 133, 229, 297, 302, 1195, 1452
TatI WGTACW 1 cut(s) 224
TauI GCSGC 3 cut(s) 1333, 1574, 1845
TfiI GAWTC 3 cut(s) 151, 212, 1864
Tru1I TTAA 2 cut(s) 1290, 1907
Tru9I TTAA 2 cut(s) 1290, 1907
TscAI CASTG 7 cut(s) 250, 256, 262, 603, 966, 1679, 1923
TseFI GTSAC 2 cut(s) 467, 875
TseI GCWGC 7 cut(s) 261, 344, 365, 1045, 1231, 1305, 1780
Tsp45I GTSAC 2 cut(s) 467, 875
TspGWI ACGGA 3 cut(s) 144, 1550, 1648
TspRI CASTG 7 cut(s) 250, 256, 262, 603, 966, 1679, 1923
VpaK11BI GGWCC 3 cut(s) 1313, 1558, 1690
XapI RAATTY 1 cut(s) 297
XceI RCATGY 1 cut(s) 268
XhoI CTCGAG 1 cut(s) 1144
XmaJI CCTAGG 1 cut(s) 778
XmiI GTMKAC 1 cut(s) 269
XspI CTAG 7 cut(s) 273, 425, 779, 824, 1130, 1424, 1437
ZrmI AGTACT 1 cut(s) 226
Zsp2I ATGCAT 1 cut(s) 1820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.