Rroxscaffold_5G00374570

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0007325
Physical Location & Seq
Reverse (-)
55586087 .. 55589676
3590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00374570.1

Sequence Viewer

Length: 1899 bp
ATGAAGTTTATGAAACTTGGATCTAGGCCAGATACTTTCTACACTTCTGAGGCTATAAGGTCAGTTTCTTCCGAAGTTTCAAGTGATCTCATAATTCAAGTTAAGGGAAGCAGATATTTGCTCCACAAGTTTCCACTTCTGTCAAAGTGTTTGAGGCTGCAGAGGCTCTGCTCTGAATATGCGGAAACCTCGCAACACCAGATAATCCAACTGCATGATTTTCCAAGTGGAGTTGAGGCATTCGAGCTCTGCGCAAAATTCTGCTATGGAATCACAATCACGCTCAGTGCCCACAACATTGTAGCTGCTCGCTGCGCTGCAGAGTACTTGCAGATGACTGAGGAAGTTGAGAAGGGAAACTTGATATATAAGCTTGAGGTCTTCTTCAACTCTTGCATACTTCATGGCTGGAGGGACTCAATTGCCACTCTGCAAAGCACCAAGGCCTTTCCTCTGTGGTCTGAGGACCTTGGAATCACAGGCAGATGTATAGACACAATTGCCTCCAAAGTCCTAACACACCCTTCAAAGGTTAGCTTGTCACATAGCTACTCCCGGAGGGGAAGAGACGACGTGTCCTGCAATGGTGCCGAGAGTCTGAGGCATGGCAAACCTGGAAACAAGGGGTGGTGGGCTGAGGATATTGCAGAATTGGGAATAGACCTTTTCTGGAGGACCATGATTGGTATTAAATCTGGTGGTGGAAGAATACCCTCTAATCTCATAGGTGATGCATTGAAAATCTACGCAGCAAAATGGCTACCCAACATATCAAAAAATGAGTACAGCAAACAAGCAGCATCGACATCTGATTCGGATTCAGACTCGGGGAATGATTTGACTTCAAAGCATAGGCTGATCTTGGAGACAATTGTGAGCTTAGTTCCGGCTGAGAAAGGTGCTACTTCTAGCAGTTTCTTGCTCAAACTGTTGAAGGCAGCCAATATTCTCAATGCCTCTTCCTCTTCCAAAATGGAATTGGCTAGAAGAGTTGGGCTTCAATTAGAGGAGGCAACAGTTGGTGACTTGTTAATACCATCTGTACCATATGAAGCTAAGGGTACTCGATACGATGTAGACATTGTTATGACCATTTTGGAGCAGTTCAAGTTACAAGGGCAGAGTCCCCCTACTAGTCCTCCAAGGTCCAAGCTTGGTAATTTCCAAAGGAGGAGGTCTAGGTCGGCTGAGAACATCGATTTCGAGTTTCAGGAGAGCCGAAGATCATCTTCAGCATCACATAGCTCAAAGCTGAAAGTGGCAAAGCTTGTGGATGTGTATCTTCAGGAAATTGGCAGGGATGTAAATTTGCCTCTGGCTAAGTTTATTGCGATTGCTGAGGCATTACCAGAATTTGCCAGGGTTGATCATGATGACCTCTACAAAGCAATTGACATTTACCTAAAGGCACATCCAGACCTGAACAAGAGTGAAAGGAAAAGGCTGTGTAGAATCCTAGACTGCAAAAAGCTGTCAATGGAGGCCTGCATGCATGCTGCACAAAATGAGCTACTTCCACTAAGAGTGGTGGTCCAAGTTCTCTTCTTCGAGCAAGCTAGAGCCGCCATGGCGGGAGGCAAAGTGACCGAGTTGCCGAGCAACATAAGGGCTCTGCTAGCCTCACATGACATTGACCCAACACGGCCTCCACCGCCTTTAAGTGCCTCTAGCATCATTCCTGCAGAGGATCAATGGAGTGTCTCGGGCCTTAAGTCACCCAAATCGAAGATGTCAACGCTACGAATGAAGCTAGAGGAAGACGATGATCTTGATGACAATGGGATTGGGAGAAGCTCAAGGCTTAAGGCTCTCTGCTTACTGCCTACAAGACCCAAAAGAATGCTCAGTAAGTTGTGGTCCATCAACAGAAGTAGCACTACTGCAAGTGAAAAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NPH3

Protein Analysis

632

Amino Acids

70.2

Weight (kDa)

8.98

Isoelectric Point (pI)

55.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPH3 PF03000 210 - 496 7.9e-90 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 253
AccB1I GGYRCC 1 cut(s) 587
AccI GTMKAC 1 cut(s) 1077
AciI CCGC 4 cut(s) 182, 1563, 1571, 1652
AclWI GGATC 2 cut(s) 28, 1695
AcsI RAATTY 3 cut(s) 257, 1306, 1352
AcuI CTGAAG 2 cut(s) 1215, 1268
AfaI GTAC 4 cut(s) 326, 785, 1044, 1063
AfiI CCNNNNNNNGG 1 cut(s) 529
AflII CTTAAG 2 cut(s) 1709, 1802
AflIII ACRYGT 1 cut(s) 573
AgsI TTSAA 9 cut(s) 81, 98, 388, 528, 739, 846, 934, 1001, 1108
AhdI GACNNNNNGTC 1 cut(s) 574
AhlI ACTAGT 1 cut(s) 1133
AjiI CACGTC 1 cut(s) 574
AjnI CCWGG 2 cut(s) 613, 1358
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 3 cut(s) 561, 860, 1705
AlwI GGATC 2 cut(s) 28, 1695
Ama87I CYCGRG 2 cut(s) 826, 1702
AoxI GGCC 5 cut(s) 26, 444, 1482, 1643, 1705
ApeKI GCWGC 8 cut(s) 157, 305, 312, 317, 749, 797, 938, 1496
ApoI RAATTY 3 cut(s) 257, 1306, 1352
ArsI GACNNNNNNTTYG 2 cut(s) 796, 828
AspLEI GCGC 2 cut(s) 254, 317
AspS9I GGNCC 6 cut(s) 466, 675, 1146, 1531, 1705, 1857
AsuC2I CCSGG 1 cut(s) 556
AsuHPI GGTGA 3 cut(s) 740, 1034, 1707
AsuNHI GCTAGC 1 cut(s) 1615
AvaI CYCGRG 2 cut(s) 826, 1702
AvaII GGWCC 5 cut(s) 466, 675, 1146, 1531, 1857
BaeGI GKGCMC 1 cut(s) 292
BanI GGYRCC 1 cut(s) 587
BanII GRGCYC 2 cut(s) 249, 1612
BarI GAAGNNNNNNTAC 2 cut(s) 1861, 1893
BbsI GAAGAC 2 cut(s) 373, 1764
Bbv12I GWGCWC 1 cut(s) 249
BbvCI CCTCAGC 2 cut(s) 636, 1338
BbvI GCAGC 8 cut(s) 144, 292, 299, 304, 761, 809, 950, 1483
BccI CCATC 2 cut(s) 1045, 1868
BceAI ACGGC 1 cut(s) 1658
BciT130I CCWGG 2 cut(s) 615, 1360
BclI TGATCA 1 cut(s) 1366
BcnI CCSGG 1 cut(s) 556
BcoDI GTCTC 3 cut(s) 561, 860, 1705
BcuI ACTAGT 1 cut(s) 1133
BfmI CTRYAG 3 cut(s) 158, 318, 1680
BfrI CTTAAG 2 cut(s) 1709, 1802
BglI GCCNNNNNGGC 1 cut(s) 1568
BisI GCNGC 9 cut(s) 158, 306, 313, 318, 750, 798, 939, 1497, 1563
BlsI GCNGC 9 cut(s) 159, 307, 314, 319, 751, 799, 940, 1498, 1564
BmcAI AGTACT 1 cut(s) 326
Bme1390I CCNGG 3 cut(s) 556, 615, 1360
Bme18I GGWCC 5 cut(s) 466, 675, 1146, 1531, 1857
BmeRI GACNNNNNGTC 1 cut(s) 574
BmeT110I CYCGRG 2 cut(s) 826, 1702
BmgBI CACGTC 1 cut(s) 574
BmgT120I GGNCC 6 cut(s) 466, 675, 1146, 1531, 1705, 1857
BmiI GGNNCC 1 cut(s) 589
BmrFI CCNGG 3 cut(s) 556, 615, 1360
BmsI GCATC 4 cut(s) 721, 809, 1244, 1680
BmtI GCTAGC 1 cut(s) 1619
BpiI GAAGAC 2 cut(s) 373, 1764
BpmI CTGGAG 2 cut(s) 430, 691
Bpu10I CCTNAGC 3 cut(s) 636, 1056, 1338
BpuEI CTTGAG 2 cut(s) 395, 1780
BpuMI CCSGG 1 cut(s) 556
Bsa29I ATCGAT 1 cut(s) 1197
BsaBI GATNNNNATC 1 cut(s) 1278
BsaJI CCNNGG 5 cut(s) 441, 469, 1142, 1359, 1566
BsaXI ACNNNNNCTCC 6 cut(s) 1123, 1153, 1566, 1596, 1630, 1660
Bsc4I CCNNNNNNNGG 1 cut(s) 529
Bse3DI GCAATG 1 cut(s) 589
Bse8I GATNNNNATC 1 cut(s) 1278
BseBI CCWGG 2 cut(s) 615, 1360
BseCI ATCGAT 1 cut(s) 1197
BseDI CCNNGG 5 cut(s) 441, 469, 1142, 1359, 1566
BseGI GGATG 3 cut(s) 1279, 1306, 1411
BseJI GATNNNNATC 1 cut(s) 1278
BseLI CCNNNNNNNGG 1 cut(s) 529
BseMI GCAATG 1 cut(s) 589
BseRI GAGGAG 2 cut(s) 1022, 1186
BseSI GKGCMC 1 cut(s) 292
BseXI GCAGC 8 cut(s) 144, 292, 299, 304, 761, 809, 950, 1483
BsgI GTGCAG 1 cut(s) 1482
BshFI GGCC 5 cut(s) 28, 446, 1484, 1645, 1707
BshNI GGYRCC 1 cut(s) 587
BshVI ATCGAT 1 cut(s) 1197
BsiHKAI GWGCWC 1 cut(s) 249
BsiHKCI CYCGRG 2 cut(s) 826, 1702
BsiSI CCGG 2 cut(s) 556, 887
BslFI GGGAC 2 cut(s) 428, 1110
BslI CCNNNNNNNGG 1 cut(s) 529
BsmAI GTCTC 3 cut(s) 561, 860, 1705
BsmBI CGTCTC 1 cut(s) 561
BsmFI GGGAC 2 cut(s) 428, 1110
BsmI GAATGC 2 cut(s) 239, 1845
BsnI GGCC 5 cut(s) 28, 446, 1484, 1645, 1707
BsoBI CYCGRG 2 cut(s) 826, 1702
Bsp1286I GDGCHC 3 cut(s) 249, 292, 1612
Bsp143I GATC 7 cut(s) 20, 85, 858, 1223, 1366, 1687, 1765
Bsp19I CCATGG 1 cut(s) 1566
BspACI CCGC 4 cut(s) 182, 1563, 1571, 1652
BspANI GGCC 5 cut(s) 28, 446, 1484, 1645, 1707
BspDI ATCGAT 1 cut(s) 1197
BspHI TCATGA 1 cut(s) 1369
BspLI GGNNCC 1 cut(s) 589
BspMAI CTGCAG 3 cut(s) 162, 322, 1684
BspOI GCTAGC 1 cut(s) 1619
BspPI GGATC 2 cut(s) 28, 1695
BspT107I GGYRCC 1 cut(s) 587
BspTI CTTAAG 2 cut(s) 1709, 1802
BsrDI GCAATG 1 cut(s) 589
BssECI CCNNGG 5 cut(s) 441, 469, 1142, 1359, 1566
BssMI GATC 7 cut(s) 20, 85, 858, 1223, 1366, 1687, 1765
BssT1I CCWWGG 4 cut(s) 441, 469, 1142, 1566
Bst2UI CCWGG 2 cut(s) 615, 1360
Bst4CI ACNGT 2 cut(s) 930, 1018
Bst6I CTCTTC 5 cut(s) 559, 964, 970, 982, 1547
BstAFI CTTAAG 2 cut(s) 1709, 1802
BstC8I GCNNGC 6 cut(s) 310, 1486, 1490, 1494, 1554, 1617
BstDSI CCRYGG 1 cut(s) 1566
BstF5I GGATG 3 cut(s) 1279, 1306, 1411
BstHHI GCGC 2 cut(s) 254, 317
BstKTI GATC 7 cut(s) 23, 88, 861, 1226, 1369, 1690, 1768
BstMAI GTCTC 3 cut(s) 561, 860, 1705
BstMBI GATC 7 cut(s) 20, 85, 858, 1223, 1366, 1687, 1765
BstMWI GCNNNNNNNGC 6 cut(s) 163, 314, 1562, 1568, 1616, 1651
BstNI CCWGG 2 cut(s) 615, 1360
BstNSI RCATGY 2 cut(s) 1492, 1496
BstSCI CCNGG 3 cut(s) 554, 613, 1358
BstSFI CTRYAG 3 cut(s) 158, 318, 1680
BstSLI GKGCMC 1 cut(s) 292
BstV1I GCAGC 8 cut(s) 144, 292, 299, 304, 761, 809, 950, 1483
BstV2I GAAGAC 2 cut(s) 373, 1764
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
Bsu15I ATCGAT 1 cut(s) 1197
BsuRI GGCC 5 cut(s) 28, 446, 1484, 1645, 1707
BsuTUI ATCGAT 1 cut(s) 1197
BtgI CCRYGG 1 cut(s) 1566
BtrI CACGTC 1 cut(s) 574
BtsCI GGATG 3 cut(s) 1279, 1306, 1411
BtsIMutI CAGTG 1 cut(s) 292
Cac8I GCNNGC 6 cut(s) 310, 1486, 1490, 1494, 1554, 1617
CciI TCATGA 1 cut(s) 1369
CfoI GCGC 2 cut(s) 254, 317
Cfr13I GGNCC 6 cut(s) 466, 675, 1146, 1531, 1705, 1857
ClaI ATCGAT 1 cut(s) 1197
Csp6I GTAC 4 cut(s) 325, 784, 1043, 1062
CspCI CAANNNNNGTGG 2 cut(s) 1251, 1286
CviAII CATG 9 cut(s) 215, 404, 605, 679, 1370, 1489, 1493, 1567, 1625
CviQI GTAC 4 cut(s) 325, 784, 1043, 1062
DpnI GATC 7 cut(s) 22, 87, 860, 1225, 1368, 1689, 1767
DpnII GATC 7 cut(s) 20, 85, 858, 1223, 1366, 1687, 1765
DriI GACNNNNNGTC 1 cut(s) 574
Eam1104I CTCTTC 5 cut(s) 559, 964, 970, 982, 1547
Eam1105I GACNNNNNGTC 1 cut(s) 574
EarI CTCTTC 5 cut(s) 559, 964, 970, 982, 1547
Ecl136II GAGCTC 1 cut(s) 247
Eco130I CCWWGG 4 cut(s) 441, 469, 1142, 1566
Eco147I AGGCCT 2 cut(s) 446, 1484
Eco24I GRGCYC 2 cut(s) 249, 1612
Eco47I GGWCC 5 cut(s) 466, 675, 1146, 1531, 1857
Eco53kI GAGCTC 1 cut(s) 247
Eco57I CTGAAG 2 cut(s) 1215, 1268
Eco88I CYCGRG 2 cut(s) 826, 1702
EcoICRI GAGCTC 1 cut(s) 247
EcoO109I RGGNCCY 1 cut(s) 466
EcoRII CCWGG 2 cut(s) 613, 1358
EcoT14I CCWWGG 4 cut(s) 441, 469, 1142, 1566
EcoT22I ATGCAT 2 cut(s) 736, 1494
EcoT38I GRGCYC 2 cut(s) 249, 1612
ErhI CCWWGG 4 cut(s) 441, 469, 1142, 1566
Esp3I CGTCTC 1 cut(s) 561
FaeI CATG 9 cut(s) 218, 407, 608, 682, 1373, 1492, 1496, 1570, 1628
FalI AAGNNNNNCTT 6 cut(s) 344, 376, 521, 553, 1213, 1245
FaqI GGGAC 2 cut(s) 428, 1110
FatI CATG 9 cut(s) 214, 403, 604, 678, 1369, 1488, 1492, 1566, 1624
FauI CCCGC 1 cut(s) 1564
FauNDI CATATG 1 cut(s) 1048
FbaI TGATCA 1 cut(s) 1366
FblI GTMKAC 1 cut(s) 1077
Fnu4HI GCNGC 9 cut(s) 158, 306, 313, 318, 750, 798, 939, 1497, 1563
FokI GGATG 3 cut(s) 1286, 1313, 1398
FriOI GRGCYC 2 cut(s) 249, 1612
Fsp4HI GCNGC 9 cut(s) 158, 306, 313, 318, 750, 798, 939, 1497, 1563
FspI TGCGCA 1 cut(s) 253
GlaI GCGC 2 cut(s) 253, 316
GluI GCNGC 9 cut(s) 158, 306, 313, 318, 750, 798, 939, 1497, 1563
GsuI CTGGAG 2 cut(s) 430, 691
HaeIII GGCC 5 cut(s) 28, 446, 1484, 1645, 1707
HapII CCGG 2 cut(s) 556, 887
HhaI GCGC 2 cut(s) 254, 317
Hin1II CATG 9 cut(s) 218, 407, 608, 682, 1373, 1492, 1496, 1570, 1628
Hin6I GCGC 2 cut(s) 252, 315
HinP1I GCGC 2 cut(s) 252, 315
HincII GTYRAC 1 cut(s) 1734
HindII GTYRAC 1 cut(s) 1734
HindIII AAGCTT 3 cut(s) 371, 1151, 1265
HinfI GANTC 9 cut(s) 270, 416, 474, 595, 812, 818, 824, 1123, 1452
HpaII CCGG 2 cut(s) 556, 887
HphI GGTGA 3 cut(s) 740, 1034, 1707
Hpy166II GTNNAC 2 cut(s) 1078, 1734
Hpy188I TCNGA 8 cut(s) 49, 73, 175, 463, 600, 811, 817, 823
Hpy188III TCNNGA 6 cut(s) 670, 1211, 1286, 1370, 1415, 1769
Hpy8I GTNNAC 2 cut(s) 1078, 1734
Hpy99I CGWCG 1 cut(s) 575
HpyAV CCTTC 3 cut(s) 346, 534, 928
HpyCH4III ACNGT 2 cut(s) 930, 1018
HpyCH4IV ACGT 1 cut(s) 573
HpyF10VI GCNNNNNNNGC 6 cut(s) 163, 314, 1562, 1568, 1616, 1651
HpySE526I ACGT 1 cut(s) 573
Hsp92II CATG 9 cut(s) 218, 407, 608, 682, 1373, 1492, 1496, 1570, 1628
HspAI GCGC 2 cut(s) 252, 315
Ksp22I TGATCA 1 cut(s) 1366
Kzo9I GATC 7 cut(s) 20, 85, 858, 1223, 1366, 1687, 1765
LmnI GCTCC 2 cut(s) 126, 1099
Lsp1109I GCAGC 8 cut(s) 144, 292, 299, 304, 761, 809, 950, 1483
LweI GCATC 4 cut(s) 721, 809, 1244, 1680
MaeII ACGT 1 cut(s) 573
MaeIII GTNAC 5 cut(s) 540, 1022, 1110, 1582, 1713
MalI GATC 7 cut(s) 22, 87, 860, 1225, 1368, 1689, 1767
MboI GATC 7 cut(s) 20, 85, 858, 1223, 1366, 1687, 1765
MfeI CAATTG 4 cut(s) 420, 498, 870, 1389
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 3 cut(s) 249, 292, 1612
MlyI GAGTC 4 cut(s) 410, 604, 818, 1132
MmeI TCCRAC 1 cut(s) 232
Mph1103I ATGCAT 2 cut(s) 736, 1494
MseI TTAA 6 cut(s) 102, 690, 1031, 1658, 1710, 1803
MslI CAYNNNNRTG 1 cut(s) 1085
MspCI CTTAAG 2 cut(s) 1709, 1802
MspI CCGG 2 cut(s) 556, 887
MspR9I CCNGG 3 cut(s) 556, 615, 1360
MunI CAATTG 4 cut(s) 420, 498, 870, 1389
Mva1269I GAATGC 2 cut(s) 239, 1845
MvaI CCWGG 2 cut(s) 615, 1360
MwoI GCNNNNNNNGC 6 cut(s) 163, 314, 1562, 1568, 1616, 1651
NciI CCSGG 1 cut(s) 556
NcoI CCATGG 1 cut(s) 1566
NdeI CATATG 1 cut(s) 1048
NdeII GATC 7 cut(s) 20, 85, 858, 1223, 1366, 1687, 1765
NheI GCTAGC 1 cut(s) 1615
NlaIII CATG 9 cut(s) 218, 407, 608, 682, 1373, 1492, 1496, 1570, 1628
NlaIV GGNNCC 1 cut(s) 589
NmeAIII GCCGAG 2 cut(s) 616, 1620
NmuCI GTSAC 4 cut(s) 540, 1022, 1582, 1713
NsbI TGCGCA 1 cut(s) 253
NsiI ATGCAT 2 cut(s) 736, 1494
NspI RCATGY 2 cut(s) 1492, 1496
PaeI GCATGC 2 cut(s) 1492, 1496
PagI TCATGA 1 cut(s) 1369
PceI AGGCCT 2 cut(s) 446, 1484
PctI GAATGC 2 cut(s) 239, 1845
PfeI GAWTC 5 cut(s) 270, 474, 812, 818, 1452
PfoI TCCNGGA 1 cut(s) 554
PkrI GCNGC 9 cut(s) 159, 307, 314, 319, 751, 799, 940, 1498, 1564
PleI GAGTC 4 cut(s) 410, 603, 818, 1131
PpsI GAGTC 4 cut(s) 410, 603, 818, 1131
PpuMI RGGWCCY 1 cut(s) 466
Psp124BI GAGCTC 1 cut(s) 249
Psp5II RGGWCCY 1 cut(s) 466
Psp6I CCWGG 2 cut(s) 613, 1358
PspGI CCWGG 2 cut(s) 613, 1358
PspN4I GGNNCC 1 cut(s) 589
PspPI GGNCC 6 cut(s) 466, 675, 1146, 1531, 1705, 1857
PspPPI RGGWCCY 1 cut(s) 466
PstI CTGCAG 3 cut(s) 162, 322, 1684
PsuI RGATCY 1 cut(s) 20
RsaI GTAC 4 cut(s) 326, 785, 1044, 1063
RsaNI GTAC 4 cut(s) 325, 784, 1043, 1062
RseI CAYNNNNRTG 1 cut(s) 1085
SacI GAGCTC 1 cut(s) 249
SaqAI TTAA 6 cut(s) 102, 690, 1031, 1658, 1710, 1803
SatI GCNGC 9 cut(s) 158, 306, 313, 318, 750, 798, 939, 1497, 1563
Sau3AI GATC 7 cut(s) 20, 85, 858, 1223, 1366, 1687, 1765
Sau96I GGNCC 6 cut(s) 466, 675, 1146, 1531, 1705, 1857
ScaI AGTACT 1 cut(s) 326
SchI GAGTC 4 cut(s) 410, 604, 818, 1132
ScrFI CCNGG 3 cut(s) 556, 615, 1360
SduI GDGCHC 3 cut(s) 249, 292, 1612
SfaNI GCATC 4 cut(s) 721, 809, 1244, 1680
SfcI CTRYAG 3 cut(s) 158, 318, 1680
SinI GGWCC 5 cut(s) 466, 675, 1146, 1531, 1857
SmiMI CAYNNNNRTG 1 cut(s) 1085
SmlI CTYRAG 4 cut(s) 374, 1709, 1795, 1802
SmoI CTYRAG 4 cut(s) 374, 1709, 1795, 1802
SpeI ACTAGT 1 cut(s) 1133
SphI GCATGC 2 cut(s) 1492, 1496
SseBI AGGCCT 2 cut(s) 446, 1484
SsiI CCGC 4 cut(s) 182, 1563, 1571, 1652
SspI AATATT 1 cut(s) 946
SstI GAGCTC 1 cut(s) 249
StuI AGGCCT 2 cut(s) 446, 1484
StyD4I CCNGG 3 cut(s) 554, 613, 1358
StyI CCWWGG 4 cut(s) 441, 469, 1142, 1566
TaaI ACNGT 2 cut(s) 930, 1018
TaiI ACGT 1 cut(s) 576
TaqI TCGA 7 cut(s) 243, 803, 1066, 1197, 1203, 1548, 1724
TaqII GACCGA 1 cut(s) 1601
TatI WGTACW 2 cut(s) 324, 783
TauI GCSGC 1 cut(s) 1565
TfiI GAWTC 5 cut(s) 270, 474, 812, 818, 1452
Tru1I TTAA 6 cut(s) 102, 690, 1031, 1658, 1710, 1803
Tru9I TTAA 6 cut(s) 102, 690, 1031, 1658, 1710, 1803
TscAI CASTG 1 cut(s) 292
TseFI GTSAC 4 cut(s) 540, 1022, 1582, 1713
TseI GCWGC 8 cut(s) 157, 305, 312, 317, 749, 797, 938, 1496
Tsp45I GTSAC 4 cut(s) 540, 1022, 1582, 1713
TspDTI ATGAA 5 cut(s) 17, 26, 392, 1065, 1760
TspRI CASTG 1 cut(s) 292
Vha464I CTTAAG 2 cut(s) 1709, 1802
VpaK11BI GGWCC 5 cut(s) 466, 675, 1146, 1531, 1857
XapI RAATTY 3 cut(s) 257, 1306, 1352
XceI RCATGY 2 cut(s) 1492, 1496
XcmI CCANNNNNNNNNTGG 1 cut(s) 976
XmiI GTMKAC 1 cut(s) 1077
ZrmI AGTACT 1 cut(s) 326
Zsp2I ATGCAT 2 cut(s) 736, 1494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.