Rroxscaffold_5G00377090

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0017166
Physical Location & Seq
Reverse (-)
57645217 .. 57649607
4391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00377090.1

Sequence Viewer

Length: 1116 bp
ATGAAGAGATACTTTGAGCAGTTTGGTGACATCTTGGAGGCTATTAGCCTCCTCCTCGTCGCCGACACCGGCAGCGATCTCGTCTGGCTCCGCTGCTCCGCCTGCAGAAACTGCTCCCATCGGAGCCCCGGCTCCGCTTTCCTAGCCCGCCACTCCACCACATTCTCACCCTACCACTGCTACGACTCCGCCTGCCACCGAGTCCCCCGACCCGACCGGAGTCCGTGTAACCATACCCGGCTCCACAGCCCCTGTCGCTACGAGTATTCCTACTCCGACGGATCCAGAACCGCCGGCTTCTTCTCCAGAGAAACCACCACTCTAAACACCAGCTCCGGGACACCGGCGAAGCTCTCTGACTTGGAGTTCGGGTGCGGGTTTGATGTTTCGGGTCCGAGCTTAACCGGGGCGAGCCTCGGCGGGGCCCACGGCGTCATGGGCCTGGGAAGAGGCCCAATCTCGTTTGCCTCGCAGCTGGGTCGCCGCTTCGGGAACAAATTCTCCTACTGTCTACTGGACTACACCCTATTGCCGCCGCCGACGAGTTACCTCAGGATCGGAGCCTCCAAATCCGACGTCGTTTCGAAACTGAGCTTCACACGCTTGCTGCTCAACCCTCTCTCCCCTACATTTTACTACATTGGTATCAAGTCCGTCTCCGTCAACGGCGTTAAATTACCGGTTCGCCCCTCCGTTTGGTCCCTCGACGAGCTCGGTAACGGCGGCACGGTGATCGACTCGGGGTCGACGTTTACTTTCTTGCCCGAGCCGGCTTACCGTCTAATCCTGGCGGCGTTTAAACGGAGCTTGAATAAGCTGGCTAGCCGAGCCGAGCCGACTCCGGGGTTCGATCTCTGTGTCAACGTGTCGGGTTTAGCGCGGGCGAGACTACCAAAGCTGAGTTTCGGACTCGCGGGTGGCTCGGTTTTCGCGCCGCCGCCGGGGAACTATTTCATTGAGACAATGGATCGGGTCGAGTGCTTGGCAATCCAGCCCGTTGATTCCGGGTCGGGCTTTTCGGTAATAGGGAATCTTATGCAACAAGGATTCTTGTTTGAGTTTGACAAGGACCGCTCGCGGCTCGGTTTTTCACGTCATGGCTGCGCGCTTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

371

Amino Acids

40.28

Weight (kDa)

9.07

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 16 - 187 4e-40 Xylanase inhibitor N-terminal
TAXi_C PF14541 212 - 364 1.2e-34 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017166)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25700 AT3G25700
fragaria_vesca FvH4_4g28140
malus_domestica MD16G1048900.v1.1
prunus_persica Prupe.1G304800_v2.0.a1
pyrus_communis pycom16g04270
rosa_chinensis RchiOBHm_Chr4g0435911
rosa_laevigata RLG00000006550
rosa_roxburghii Rroxscaffold_5G00377090
rosa_rugosa Rorug04G0290700
rosa_samantha Rh4BG353800 Rh4DG347600
rosa_wichuraiana Rw4G030130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 579
AccBSI CCGCTC 1 cut(s) 1074
AccI GTMKAC 2 cut(s) 511, 746
AccII CGCG 5 cut(s) 880, 914, 932, 1078, 1106
AclWI GGATC 4 cut(s) 276, 289, 563, 975
AcsI RAATTY 1 cut(s) 497
AcyI GRCGYC 2 cut(s) 432, 576
AfiI CCNNNNNNNGG 5 cut(s) 336, 421, 696, 842, 941
AflIII ACRYGT 1 cut(s) 864
AgeI ACCGGT 1 cut(s) 679
AgsI TTSAA 1 cut(s) 811
AhdI GACNNNNNGTC 1 cut(s) 742
AjiI CACGTC 1 cut(s) 1094
AjnI CCWGG 2 cut(s) 441, 786
AloI GAACNNNNNNTCC 2 cut(s) 485, 517
AluBI AGCT 9 cut(s) 333, 352, 399, 475, 594, 712, 807, 817, 898
AluI AGCT 9 cut(s) 333, 352, 399, 475, 594, 712, 807, 817, 898
Alw21I GWGCWC 1 cut(s) 714
Alw26I GTCTC 3 cut(s) 661, 880, 953
AlwI GGATC 4 cut(s) 276, 289, 563, 975
AlwNI CAGNNNCTG 2 cut(s) 111, 252
Ama87I CYCGRG 2 cut(s) 739, 764
AoxI GGCC 3 cut(s) 423, 439, 451
ApaI GGGCCC 1 cut(s) 427
ApeKI GCWGC 5 cut(s) 72, 93, 472, 607, 1101
ApoI RAATTY 1 cut(s) 497
ArsI GACNNNNNNTTYG 4 cut(s) 350, 382, 561, 593
AsiGI ACCGGT 1 cut(s) 679
Asp700I GAANNNNTTC 2 cut(s) 497, 950
AspLEI GCGC 4 cut(s) 880, 934, 1106, 1108
AspS9I GGNCC 7 cut(s) 392, 423, 424, 439, 452, 699, 1069
AsuC2I CCSGG 7 cut(s) 129, 238, 337, 406, 843, 942, 1006
AsuHPI GGTGA 3 cut(s) 38, 159, 742
AsuII TTCGAA 1 cut(s) 584
AsuNHI GCTAGC 1 cut(s) 821
AvaI CYCGRG 2 cut(s) 739, 764
AvaII GGWCC 3 cut(s) 392, 699, 1069
AxyI CCTNAGG 1 cut(s) 551
BaeGI GKGCMC 1 cut(s) 427
BaeI ACNNNNGTAYC 2 cut(s) 628, 661
BamHI GGATCC 1 cut(s) 281
BanII GRGCYC 3 cut(s) 128, 427, 714
Bbv12I GWGCWC 1 cut(s) 714
BbvI GCAGC 5 cut(s) 80, 84, 484, 594, 1088
BccI CCATC 1 cut(s) 126
BceAI ACGGC 3 cut(s) 445, 682, 736
BcgI CGANNNNNNTGC 6 cut(s) 61, 95, 461, 495, 715, 749
BciT130I CCWGG 2 cut(s) 443, 788
BcnI CCSGG 7 cut(s) 129, 238, 337, 406, 843, 942, 1006
BcoDI GTCTC 3 cut(s) 661, 880, 953
BfaI CTAG 2 cut(s) 143, 822
BfmI CTRYAG 1 cut(s) 103
Bme1390I CCNGG 9 cut(s) 129, 238, 337, 406, 443, 788, 843, 942, 1006
Bme18I GGWCC 3 cut(s) 392, 699, 1069
BmeRI GACNNNNNGTC 1 cut(s) 742
BmeT110I CYCGRG 2 cut(s) 739, 764
BmgBI CACGTC 1 cut(s) 1094
BmgT120I GGNCC 7 cut(s) 392, 423, 424, 439, 452, 699, 1069
BmrFI CCNGG 9 cut(s) 129, 238, 337, 406, 443, 788, 843, 942, 1006
BmtI GCTAGC 1 cut(s) 825
BoxI GACNNNNGTC 1 cut(s) 219
BpmI CTGGAG 1 cut(s) 289
Bpu14I TTCGAA 1 cut(s) 584
BpuMI CCSGG 7 cut(s) 129, 238, 337, 406, 843, 942, 1006
BsaHI GRCGYC 2 cut(s) 432, 576
BsaJI CCNNGG 7 cut(s) 127, 405, 415, 427, 442, 842, 941
BsaWI WCCGGW 2 cut(s) 216, 679
Bsc4I CCNNNNNNNGG 5 cut(s) 336, 421, 696, 842, 941
Bse118I RCCGGY 5 cut(s) 68, 293, 343, 679, 769
Bse1I ACTGG 1 cut(s) 519
Bse21I CCTNAGG 1 cut(s) 551
BseBI CCWGG 2 cut(s) 443, 788
BseDI CCNNGG 7 cut(s) 127, 405, 415, 427, 442, 842, 941
BseLI CCNNNNNNNGG 5 cut(s) 336, 421, 696, 842, 941
BseMII CTCAG 3 cut(s) 565, 581, 890
BseNI ACTGG 1 cut(s) 519
BsePI GCGCGC 1 cut(s) 1104
BseRI GAGGAG 2 cut(s) 41, 44
BseSI GKGCMC 1 cut(s) 427
BseXI GCAGC 5 cut(s) 80, 84, 484, 594, 1088
BseYI CCCAGC 1 cut(s) 475
Bsh1236I CGCG 5 cut(s) 880, 914, 932, 1078, 1106
Bsh1285I CGRYCG 1 cut(s) 217
BshFI GGCC 3 cut(s) 425, 441, 453
BshTI ACCGGT 1 cut(s) 679
BsiEI CGRYCG 1 cut(s) 217
BsiHKAI GWGCWC 1 cut(s) 714
BsiHKCI CYCGRG 2 cut(s) 739, 764
BslFI GGGAC 3 cut(s) 188, 352, 685
BslI CCNNNNNNNGG 5 cut(s) 336, 421, 696, 842, 941
BsmAI GTCTC 3 cut(s) 661, 880, 953
BsmBI CGTCTC 1 cut(s) 661
BsmFI GGGAC 3 cut(s) 188, 352, 685
BsnI GGCC 3 cut(s) 425, 441, 453
BsoBI CYCGRG 2 cut(s) 739, 764
Bsp119I TTCGAA 1 cut(s) 584
Bsp120I GGGCCC 1 cut(s) 423
Bsp1286I GDGCHC 3 cut(s) 128, 427, 714
Bsp143I GATC 6 cut(s) 76, 281, 555, 732, 850, 967
BspANI GGCC 3 cut(s) 425, 441, 453
BspCNI CTCAG 3 cut(s) 564, 582, 891
BspFNI CGCG 5 cut(s) 880, 914, 932, 1078, 1106
BspMAI CTGCAG 1 cut(s) 107
BspOI GCTAGC 1 cut(s) 825
BspPI GGATC 4 cut(s) 276, 289, 563, 975
BspT104I TTCGAA 1 cut(s) 584
BsrBI CCGCTC 1 cut(s) 1074
BsrFI RCCGGY 5 cut(s) 68, 293, 343, 679, 769
BsrI ACTGG 1 cut(s) 519
BssAI RCCGGY 5 cut(s) 68, 293, 343, 679, 769
BssECI CCNNGG 7 cut(s) 127, 405, 415, 427, 442, 842, 941
BssHII GCGCGC 1 cut(s) 1104
BssMI GATC 6 cut(s) 76, 281, 555, 732, 850, 967
BssNI GRCGYC 2 cut(s) 432, 576
Bst2UI CCWGG 2 cut(s) 443, 788
Bst4CI ACNGT 3 cut(s) 509, 730, 779
Bst6I CTCTTC 1 cut(s) 442
BstACI GRCGYC 2 cut(s) 432, 576
BstAPI GCANNNNNTGC 1 cut(s) 111
BstBI TTCGAA 1 cut(s) 584
BstDEI CTNAG 3 cut(s) 551, 590, 899
BstDSI CCRYGG 1 cut(s) 427
BstFNI CGCG 5 cut(s) 880, 914, 932, 1078, 1106
BstHHI GCGC 4 cut(s) 880, 934, 1106, 1108
BstKTI GATC 6 cut(s) 79, 284, 558, 735, 853, 970
BstMAI GTCTC 3 cut(s) 661, 880, 953
BstMBI GATC 6 cut(s) 76, 281, 555, 732, 850, 967
BstMCI CGRYCG 1 cut(s) 217
BstMWI GCNNNNNNNGC 7 cut(s) 102, 111, 143, 255, 438, 600, 827
BstNI CCWGG 2 cut(s) 443, 788
BstPAI GACNNNNGTC 1 cut(s) 219
BstSCI CCNGG 9 cut(s) 127, 236, 335, 404, 441, 786, 841, 940, 1004
BstSFI CTRYAG 1 cut(s) 103
BstSLI GKGCMC 1 cut(s) 427
BstUI CGCG 5 cut(s) 880, 914, 932, 1078, 1106
BstV1I GCAGC 5 cut(s) 80, 84, 484, 594, 1088
BstX2I RGATCY 1 cut(s) 281
BstYI RGATCY 1 cut(s) 281
Bsu36I CCTNAGG 1 cut(s) 551
BsuRI GGCC 3 cut(s) 425, 441, 453
BtgI CCRYGG 1 cut(s) 427
BtrI CACGTC 1 cut(s) 1094
BtsI GCAGTG 1 cut(s) 175
BtsIMutI CAGTG 2 cut(s) 175, 1111
CaiI CAGNNNCTG 2 cut(s) 111, 252
CfoI GCGC 4 cut(s) 880, 934, 1106, 1108
Cfr10I RCCGGY 5 cut(s) 68, 293, 343, 679, 769
Cfr13I GGNCC 7 cut(s) 392, 423, 424, 439, 452, 699, 1069
CseI GACGC 1 cut(s) 421
CspAI ACCGGT 1 cut(s) 679
CviAII CATG 2 cut(s) 436, 1097
DdeI CTNAG 3 cut(s) 551, 590, 899
DpnI GATC 6 cut(s) 78, 283, 557, 734, 852, 969
DpnII GATC 6 cut(s) 76, 281, 555, 732, 850, 967
DraI TTTAAA 1 cut(s) 799
DriI GACNNNNNGTC 1 cut(s) 742
Eam1104I CTCTTC 1 cut(s) 442
Eam1105I GACNNNNNGTC 1 cut(s) 742
EarI CTCTTC 1 cut(s) 442
EciI GGCGGA 2 cut(s) 88, 178
Ecl136II GAGCTC 1 cut(s) 712
Eco24I GRGCYC 3 cut(s) 128, 427, 714
Eco47I GGWCC 3 cut(s) 392, 699, 1069
Eco53kI GAGCTC 1 cut(s) 712
Eco81I CCTNAGG 1 cut(s) 551
Eco88I CYCGRG 2 cut(s) 739, 764
EcoICRI GAGCTC 1 cut(s) 712
EcoO109I RGGNCCY 1 cut(s) 423
EcoRII CCWGG 2 cut(s) 441, 786
EcoT38I GRGCYC 3 cut(s) 128, 427, 714
Esp3I CGTCTC 1 cut(s) 661
FaeI CATG 2 cut(s) 439, 1100
FaiI YATR 4 cut(s) 234, 437, 1037, 1098
FalI AAGNNNNNCTT 1 cut(s) 28
FaqI GGGAC 3 cut(s) 188, 352, 685
FatI CATG 2 cut(s) 435, 1096
FauI CCCGC 5 cut(s) 155, 368, 413, 873, 907
FblI GTMKAC 2 cut(s) 511, 746
FriOI GRGCYC 3 cut(s) 128, 427, 714
FspBI CTAG 2 cut(s) 143, 822
GlaI GCGC 4 cut(s) 879, 933, 1105, 1107
GsaI CCCAGC 1 cut(s) 479
GsuI CTGGAG 1 cut(s) 289
HaeIII GGCC 3 cut(s) 425, 441, 453
HgaI GACGC 1 cut(s) 421
HhaI GCGC 4 cut(s) 880, 934, 1106, 1108
Hin1I GRCGYC 2 cut(s) 432, 576
Hin1II CATG 2 cut(s) 439, 1100
Hin6I GCGC 4 cut(s) 878, 932, 1104, 1106
HinP1I GCGC 4 cut(s) 878, 932, 1104, 1106
HincII GTYRAC 3 cut(s) 664, 747, 862
HindII GTYRAC 3 cut(s) 664, 747, 862
HinfI GANTC 9 cut(s) 185, 201, 220, 737, 838, 909, 1001, 1030, 1047
HphI GGTGA 3 cut(s) 38, 159, 742
Hpy166II GTNNAC 5 cut(s) 512, 664, 747, 753, 862
Hpy188I TCNGA 7 cut(s) 123, 277, 358, 396, 560, 574, 908
Hpy188III TCNNGA 4 cut(s) 285, 306, 490, 553
Hpy8I GTNNAC 5 cut(s) 512, 664, 747, 753, 862
Hpy99I CGWCG 7 cut(s) 62, 281, 544, 578, 581, 710, 751
HpyCH4III ACNGT 3 cut(s) 509, 730, 779
HpyCH4IV ACGT 4 cut(s) 576, 749, 864, 1093
HpyCH4V TGCA 2 cut(s) 105, 1039
HpyF10VI GCNNNNNNNGC 7 cut(s) 102, 111, 143, 255, 438, 600, 827
HpyF3I CTNAG 3 cut(s) 551, 590, 899
HpySE526I ACGT 4 cut(s) 576, 749, 864, 1093
Hsp92I GRCGYC 2 cut(s) 432, 576
Hsp92II CATG 2 cut(s) 439, 1100
HspAI GCGC 4 cut(s) 878, 932, 1104, 1106
KroI GCCGGC 2 cut(s) 293, 769
KroNI GCCGGC 2 cut(s) 295, 771
Kzo9I GATC 6 cut(s) 76, 281, 555, 732, 850, 967
LmnI GCTCC 9 cut(s) 93, 101, 119, 123, 137, 246, 338, 560, 804
Lsp1109I GCAGC 5 cut(s) 80, 84, 484, 594, 1088
MaeI CTAG 2 cut(s) 143, 822
MaeII ACGT 4 cut(s) 576, 749, 864, 1093
MaeIII GTNAC 4 cut(s) 26, 227, 545, 716
MalI GATC 6 cut(s) 78, 283, 557, 734, 852, 969
MbiI CCGCTC 1 cut(s) 1074
MboI GATC 6 cut(s) 76, 281, 555, 732, 850, 967
MboII GAAGA 3 cut(s) 16, 292, 459
MflI RGATCY 1 cut(s) 281
MhlI GDGCHC 3 cut(s) 128, 427, 714
MluCI AATT 2 cut(s) 497, 674
MlyI GAGTC 6 cut(s) 179, 210, 229, 731, 832, 903
MmeI TCCRAC 2 cut(s) 300, 597
MroNI GCCGGC 2 cut(s) 293, 769
MroXI GAANNNNTTC 2 cut(s) 497, 950
MseI TTAA 3 cut(s) 401, 672, 798
MspA1I CMGCKG 2 cut(s) 93, 475
MspR9I CCNGG 9 cut(s) 129, 238, 337, 406, 443, 788, 843, 942, 1006
MssI GTTTAAAC 1 cut(s) 799
MvaI CCWGG 2 cut(s) 443, 788
MvnI CGCG 5 cut(s) 880, 914, 932, 1078, 1106
MwoI GCNNNNNNNGC 7 cut(s) 102, 111, 143, 255, 438, 600, 827
NaeI GCCGGC 2 cut(s) 295, 771
NciI CCSGG 7 cut(s) 129, 238, 337, 406, 843, 942, 1006
NdeII GATC 6 cut(s) 76, 281, 555, 732, 850, 967
NgoMIV GCCGGC 2 cut(s) 293, 769
NheI GCTAGC 1 cut(s) 821
NlaIII CATG 2 cut(s) 439, 1100
NmeAIII GCCGAG 3 cut(s) 396, 851, 856
NmuCI GTSAC 1 cut(s) 26
NspV TTCGAA 1 cut(s) 584
PauI GCGCGC 1 cut(s) 1104
PcsI WCGNNNNNNNCGW 1 cut(s) 746
PdiI GCCGGC 2 cut(s) 295, 771
PdmI GAANNNNTTC 2 cut(s) 497, 950
PfeI GAWTC 3 cut(s) 1001, 1030, 1047
PfoI TCCNGGA 1 cut(s) 335
PinAI ACCGGT 1 cut(s) 679
PleI GAGTC 6 cut(s) 179, 209, 228, 731, 832, 903
PmeI GTTTAAAC 1 cut(s) 799
PpsI GAGTC 6 cut(s) 179, 209, 228, 731, 832, 903
PshAI GACNNNNGTC 1 cut(s) 219
Psp124BI GAGCTC 1 cut(s) 714
Psp6I CCWGG 2 cut(s) 441, 786
PspFI CCCAGC 1 cut(s) 475
PspGI CCWGG 2 cut(s) 441, 786
PspOMI GGGCCC 1 cut(s) 423
PspPI GGNCC 7 cut(s) 392, 423, 424, 439, 452, 699, 1069
PstI CTGCAG 1 cut(s) 107
PstNI CAGNNNCTG 2 cut(s) 111, 252
PsuI RGATCY 1 cut(s) 281
PteI GCGCGC 1 cut(s) 1104
PvuII CAGCTG 1 cut(s) 475
SacI GAGCTC 1 cut(s) 714
SalI GTCGAC 1 cut(s) 745
SaqAI TTAA 3 cut(s) 401, 672, 798
Sau3AI GATC 6 cut(s) 76, 281, 555, 732, 850, 967
Sau96I GGNCC 7 cut(s) 392, 423, 424, 439, 452, 699, 1069
SchI GAGTC 6 cut(s) 179, 210, 229, 731, 832, 903
ScrFI CCNGG 9 cut(s) 129, 238, 337, 406, 443, 788, 843, 942, 1006
SduI GDGCHC 3 cut(s) 128, 427, 714
SfcI CTRYAG 1 cut(s) 103
SfuI TTCGAA 1 cut(s) 584
SgrAI CRCCGGYG 1 cut(s) 343
SinI GGWCC 3 cut(s) 392, 699, 1069
Sse9I AATT 2 cut(s) 497, 674
SspMI CTAG 2 cut(s) 143, 822
SstI GAGCTC 1 cut(s) 714
StyD4I CCNGG 9 cut(s) 127, 236, 335, 404, 441, 786, 841, 940, 1004
TaaI ACNGT 3 cut(s) 509, 730, 779
TaiI ACGT 4 cut(s) 579, 752, 867, 1096
TaqI TCGA 6 cut(s) 584, 705, 735, 746, 849, 975
TasI AATT 2 cut(s) 497, 674
TauI GCSGC 8 cut(s) 486, 535, 538, 726, 794, 937, 940, 1081
TfiI GAWTC 3 cut(s) 1001, 1030, 1047
Tru1I TTAA 3 cut(s) 401, 672, 798
Tru9I TTAA 3 cut(s) 401, 672, 798
TscAI CASTG 1 cut(s) 182
TseFI GTSAC 1 cut(s) 26
TseI GCWGC 5 cut(s) 72, 93, 472, 607, 1101
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 2 cut(s) 17, 943
TspGWI ACGGA 6 cut(s) 213, 294, 643, 649, 682, 817
TspRI CASTG 1 cut(s) 182
VpaK11BI GGWCC 3 cut(s) 392, 699, 1069
XapI RAATTY 1 cut(s) 497
XmiI GTMKAC 2 cut(s) 511, 746
XmnI GAANNNNTTC 2 cut(s) 497, 950
XspI CTAG 2 cut(s) 143, 822
ZraI GACGTC 1 cut(s) 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.