Rroxscaffold_5G00380290

methyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0018029
Physical Location & Seq
Forward (+)
60451891 .. 60452850
960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00380290.1

Sequence Viewer

Length: 960 bp
ATGTGGTACCACGGTAGGTCGTCCGATCCGAACAACAGTTCCGACTCCATCGGCCTCGCGGTTTCGAGTAATGGGATTCATTGGGCGAGAGGAGCCGAACACGTCATGTCTTGTGGTGAGGACGAGGGTTTGGTCATGAGCTGCTCGGACAATTGGTGGGCGTTCGACACAAAAAGCATTAAGCCTTCCGAGATGGTCATCATGTCGAGTCCTATGTACAGCGCAGTGTACTGGCTTTACTACACCGGGTACAGTTCCGAAAAGGTGGACTGTAGTAACTATCCGGTTGGTCAATGTTCAGTGGACTCGTTTAAGTCTCTGCCCGGACTGGCTTGCAGCCAGGACGGGCGAAACTGGGCCAGGATTGAAGGGGATTGTCATAGTGGTGCCTTGCTCGACGTAGGGTCCAAAAATGAGTGGGATTCTTTGTTCATTGCAAAACCTCAAGTGGTTGTGCATGGCAGCGATGACATGAGAATGTATTATCATTCGTTTGATGCAGAAAACGGTCACTTTGGCATTGGGATGGCGAGATCCAGGGACGGAATAAGGTGGGTGAAGTTGGGGAAAATTATGGGGGGAGGGGCAAAAGGGTCATTTGACGAGCTTGGGGTGAAAAATGCTTGCGTGGTTAGGAACAGGAAGGAAGGGAACTACTTAATGGCGTACGAGGGTGTGAGAGCGGATGGGAAGATGAGTATTGGTCTGGCTGTATCCCCCGATGGGCTGAAGGACTGGACCAGAGTCCAAGACTGGTCAGTTCTCAGCTCATCAGAAGAAGATGGATGGGACAACAGAGGAGTGGGATCCCCGAGTCTGGTGCATATGGAAGGGAATGTAGACATGTGGAGATTGTATTATGTGGGTGTTGGAGAAGATGGAAGGACTGGGATTGGAATGGCGATTTCGGAAGGTAGTAACGTCAGAAACTTCAGAAGGTGGGCAGGGTTTCAATCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

319

Amino Acids

35.15

Weight (kDa)

5.4

Isoelectric Point (pI)

43.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018029)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g30990
rosa_chinensis RchiOBHm_Chr4g0439361
rosa_laevigata RLG00000006276
rosa_multiflora Rmu_co8431667.1_g000001 Rmu_sc0004012.1_g000003
rosa_roxburghii Rroxscaffold_5G00380290
rosa_samantha Rh4AG368800 Rh4BG380600 Rh4CG395100 Rh4DG375400
rosa_wichuraiana Rw4G031450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 6
AccB1I GGYRCC 2 cut(s) 6, 386
AccBSI CCGCTC 1 cut(s) 683
AccI GTMKAC 1 cut(s) 840
AccII CGCG 1 cut(s) 59
AciI CCGC 2 cut(s) 59, 683
AclWI GGATC 4 cut(s) 20, 528, 801, 814
AcuI CTGAAG 2 cut(s) 749, 916
AfaI GTAC 5 cut(s) 8, 218, 230, 251, 668
AfiI CCNNNNNNNGG 2 cut(s) 723, 817
AflIII ACRYGT 2 cut(s) 100, 843
AgsI TTSAA 2 cut(s) 368, 953
AhdI GACNNNNNGTC 1 cut(s) 403
AjiI CACGTC 1 cut(s) 103
AjnI CCWGG 3 cut(s) 339, 359, 536
AloI GAACNNNNNNTCC 4 cut(s) 23, 55, 413, 445
AluBI AGCT 3 cut(s) 141, 607, 768
AluI AGCT 3 cut(s) 141, 607, 768
Alw26I GTCTC 1 cut(s) 321
AlwI GGATC 4 cut(s) 20, 528, 801, 814
Ama87I CYCGRG 1 cut(s) 811
AoxI GGCC 2 cut(s) 52, 357
ApeKI GCWGC 3 cut(s) 141, 336, 462
Asp718I GGTACC 1 cut(s) 6
AspLEI GCGC 1 cut(s) 224
AspS9I GGNCC 3 cut(s) 357, 405, 738
AsuC2I CCSGG 2 cut(s) 247, 324
AsuHPI GGTGA 3 cut(s) 128, 568, 625
AvaI CYCGRG 1 cut(s) 811
AvaII GGWCC 2 cut(s) 405, 738
BaeI ACNNNNGTAYC 1 cut(s) 31
BamHI GGATCC 1 cut(s) 806
BanI GGYRCC 2 cut(s) 6, 386
BbvI GCAGC 3 cut(s) 128, 348, 474
BccI CCATC 8 cut(s) 56, 187, 520, 680, 716, 776, 780, 872
BcgI CGANNNNNNTGC 2 cut(s) 802, 836
BciT130I CCWGG 3 cut(s) 341, 361, 538
BciVI GTATCC 1 cut(s) 724
BcnI CCSGG 2 cut(s) 247, 324
BcoDI GTCTC 1 cut(s) 321
BfmI CTRYAG 1 cut(s) 271
BfuI GTATCC 1 cut(s) 724
BisI GCNGC 3 cut(s) 142, 337, 463
BlsI GCNGC 3 cut(s) 143, 338, 464
Bme1390I CCNGG 5 cut(s) 247, 324, 341, 361, 538
Bme18I GGWCC 2 cut(s) 405, 738
BmeRI GACNNNNNGTC 1 cut(s) 403
BmeT110I CYCGRG 1 cut(s) 811
BmgBI CACGTC 1 cut(s) 103
BmgT120I GGNCC 3 cut(s) 357, 405, 738
BmiI GGNNCC 5 cut(s) 8, 94, 388, 406, 808
BmrFI CCNGG 5 cut(s) 247, 324, 341, 361, 538
BmrI ACTGGG 2 cut(s) 364, 897
BmsI GCATC 1 cut(s) 487
BmuI ACTGGG 2 cut(s) 364, 897
BoxI GACNNNNGTC 1 cut(s) 743
BpuEI CTTGAG 1 cut(s) 429
BpuMI CCSGG 2 cut(s) 247, 324
BsaBI GATNNNNATC 1 cut(s) 197
BsaJI CCNNGG 2 cut(s) 10, 537
BsaWI WCCGGW 1 cut(s) 283
Bsc4I CCNNNNNNNGG 2 cut(s) 723, 817
Bse1I ACTGG 6 cut(s) 236, 333, 359, 740, 758, 892
Bse3DI GCAATG 1 cut(s) 432
Bse8I GATNNNNATC 1 cut(s) 197
BseBI CCWGG 3 cut(s) 341, 361, 538
BseDI CCNNGG 2 cut(s) 10, 537
BseGI GGATG 3 cut(s) 531, 691, 791
BseJI GATNNNNATC 1 cut(s) 197
BseLI CCNNNNNNNGG 2 cut(s) 723, 817
BseMI GCAATG 1 cut(s) 432
BseMII CTCAG 1 cut(s) 778
BseNI ACTGG 6 cut(s) 236, 333, 359, 740, 758, 892
BseRI GAGGAG 2 cut(s) 105, 813
BseXI GCAGC 3 cut(s) 128, 348, 474
Bsh1236I CGCG 1 cut(s) 59
BshFI GGCC 2 cut(s) 54, 359
BshNI GGYRCC 2 cut(s) 6, 386
BsiHKCI CYCGRG 1 cut(s) 811
BsiSI CCGG 3 cut(s) 246, 284, 324
BsiWI CGTACG 1 cut(s) 666
BslFI GGGAC 2 cut(s) 554, 803
BslI CCNNNNNNNGG 2 cut(s) 723, 817
BsmAI GTCTC 1 cut(s) 321
BsmFI GGGAC 2 cut(s) 554, 803
BsnI GGCC 2 cut(s) 54, 359
BsoBI CYCGRG 1 cut(s) 811
Bsp1407I TGTACA 1 cut(s) 216
Bsp143I GATC 3 cut(s) 25, 533, 806
BspACI CCGC 2 cut(s) 59, 683
BspANI GGCC 2 cut(s) 54, 359
BspCNI CTCAG 1 cut(s) 777
BspFNI CGCG 1 cut(s) 59
BspHI TCATGA 1 cut(s) 135
BspLI GGNNCC 5 cut(s) 8, 94, 388, 406, 808
BspPI GGATC 4 cut(s) 20, 528, 801, 814
BspT107I GGYRCC 2 cut(s) 6, 386
BsrBI CCGCTC 1 cut(s) 683
BsrDI GCAATG 1 cut(s) 432
BsrGI TGTACA 1 cut(s) 216
BsrI ACTGG 6 cut(s) 236, 333, 359, 740, 758, 892
BssECI CCNNGG 2 cut(s) 10, 537
BssMI GATC 3 cut(s) 25, 533, 806
Bst2UI CCWGG 3 cut(s) 341, 361, 538
Bst4CI ACNGT 5 cut(s) 14, 38, 254, 272, 509
BstAUI TGTACA 1 cut(s) 216
BstC8I GCNNGC 2 cut(s) 334, 625
BstDEI CTNAG 1 cut(s) 764
BstDSI CCRYGG 1 cut(s) 10
BstF5I GGATG 3 cut(s) 531, 691, 791
BstFNI CGCG 1 cut(s) 59
BstHHI GCGC 1 cut(s) 224
BstKTI GATC 3 cut(s) 28, 536, 809
BstMAI GTCTC 1 cut(s) 321
BstMBI GATC 3 cut(s) 25, 533, 806
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 3 cut(s) 341, 361, 538
BstNSI RCATGY 1 cut(s) 847
BstPAI GACNNNNGTC 1 cut(s) 743
BstSCI CCNGG 5 cut(s) 245, 322, 339, 359, 536
BstSFI CTRYAG 1 cut(s) 271
BstUI CGCG 1 cut(s) 59
BstV1I GCAGC 3 cut(s) 128, 348, 474
BstX2I RGATCY 2 cut(s) 533, 806
BstYI RGATCY 2 cut(s) 533, 806
BsuI GTATCC 1 cut(s) 724
BsuRI GGCC 2 cut(s) 54, 359
BtgI CCRYGG 1 cut(s) 10
BtgZI GCGATG 1 cut(s) 480
BtrI CACGTC 1 cut(s) 103
BtsCI GGATG 3 cut(s) 531, 691, 791
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 2 cut(s) 231, 306
Cac8I GCNNGC 2 cut(s) 334, 625
CciI TCATGA 1 cut(s) 135
CfoI GCGC 1 cut(s) 224
Cfr13I GGNCC 3 cut(s) 357, 405, 738
Csp6I GTAC 5 cut(s) 7, 217, 229, 250, 667
CviAII CATG 6 cut(s) 106, 136, 202, 458, 472, 844
CviQI GTAC 5 cut(s) 7, 217, 229, 250, 667
DdeI CTNAG 1 cut(s) 764
DpnI GATC 3 cut(s) 27, 535, 808
DpnII GATC 3 cut(s) 25, 533, 806
DriI GACNNNNNGTC 1 cut(s) 403
Eam1105I GACNNNNNGTC 1 cut(s) 403
Eco47I GGWCC 2 cut(s) 405, 738
Eco57I CTGAAG 2 cut(s) 749, 916
Eco88I CYCGRG 1 cut(s) 811
EcoRII CCWGG 3 cut(s) 339, 359, 536
FaeI CATG 6 cut(s) 109, 139, 205, 461, 475, 847
FaqI GGGAC 2 cut(s) 554, 803
FatI CATG 6 cut(s) 105, 135, 201, 457, 471, 843
FauNDI CATATG 1 cut(s) 825
FblI GTMKAC 1 cut(s) 840
Fnu4HI GCNGC 3 cut(s) 142, 337, 463
FokI GGATG 3 cut(s) 538, 698, 798
Fsp4HI GCNGC 3 cut(s) 142, 337, 463
GlaI GCGC 1 cut(s) 223
GluI GCNGC 3 cut(s) 142, 337, 463
HaeIII GGCC 2 cut(s) 54, 359
HapII CCGG 3 cut(s) 246, 284, 324
HhaI GCGC 1 cut(s) 224
Hin1II CATG 6 cut(s) 109, 139, 205, 461, 475, 847
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HinfI GANTC 7 cut(s) 44, 76, 208, 305, 422, 744, 814
HpaII CCGG 3 cut(s) 246, 284, 324
HphI GGTGA 3 cut(s) 128, 568, 625
Hpy166II GTNNAC 4 cut(s) 229, 268, 304, 841
Hpy188III TCNNGA 1 cut(s) 136
Hpy8I GTNNAC 4 cut(s) 229, 268, 304, 841
Hpy99I CGWCG 1 cut(s) 401
HpyAV CCTTC 9 cut(s) 195, 362, 637, 641, 724, 824, 876, 905, 930
HpyCH4III ACNGT 5 cut(s) 14, 38, 254, 272, 509
HpyCH4IV ACGT 3 cut(s) 102, 399, 921
HpyCH4V TGCA 5 cut(s) 336, 437, 457, 500, 823
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 1 cut(s) 764
HpySE526I ACGT 3 cut(s) 102, 399, 921
Hsp92II CATG 6 cut(s) 109, 139, 205, 461, 475, 847
HspAI GCGC 1 cut(s) 222
KpnI GGTACC 1 cut(s) 10
Kzo9I GATC 3 cut(s) 25, 533, 806
LmnI GCTCC 1 cut(s) 92
Lsp1109I GCAGC 3 cut(s) 128, 348, 474
LweI GCATC 1 cut(s) 487
MaeII ACGT 3 cut(s) 102, 399, 921
MaeIII GTNAC 3 cut(s) 275, 509, 917
MalI GATC 3 cut(s) 27, 535, 808
MbiI CCGCTC 1 cut(s) 683
MboI GATC 3 cut(s) 25, 533, 806
MboII GAAGA 4 cut(s) 703, 788, 791, 887
MfeI CAATTG 1 cut(s) 151
MflI RGATCY 2 cut(s) 533, 806
MluCI AATT 2 cut(s) 151, 570
MlyI GAGTC 5 cut(s) 38, 217, 299, 753, 823
MmeI TCCRAC 2 cut(s) 66, 850
MnlI CCTC 8 cut(s) 65, 83, 112, 118, 453, 575, 664, 791
MseI TTAA 3 cut(s) 180, 312, 659
MslI CAYNNNNRTG 3 cut(s) 384, 476, 524
MspI CCGG 3 cut(s) 246, 284, 324
MspR9I CCNGG 5 cut(s) 247, 324, 341, 361, 538
MunI CAATTG 1 cut(s) 151
MvaI CCWGG 3 cut(s) 341, 361, 538
MvnI CGCG 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 92
NciI CCSGG 2 cut(s) 247, 324
NdeI CATATG 1 cut(s) 825
NdeII GATC 3 cut(s) 25, 533, 806
NlaIII CATG 6 cut(s) 109, 139, 205, 461, 475, 847
NlaIV GGNNCC 5 cut(s) 8, 94, 388, 406, 808
NmuCI GTSAC 1 cut(s) 509
NspI RCATGY 1 cut(s) 847
PagI TCATGA 1 cut(s) 135
PciI ACATGT 1 cut(s) 843
PcsI WCGNNNNNNNCGW 1 cut(s) 26
PfeI GAWTC 2 cut(s) 76, 422
Pfl23II CGTACG 1 cut(s) 666
PkrI GCNGC 3 cut(s) 143, 338, 464
PleI GAGTC 5 cut(s) 38, 216, 299, 752, 822
PpsI GAGTC 5 cut(s) 38, 216, 299, 752, 822
PscI ACATGT 1 cut(s) 843
PshAI GACNNNNGTC 1 cut(s) 743
Psp6I CCWGG 3 cut(s) 339, 359, 536
PspGI CCWGG 3 cut(s) 339, 359, 536
PspLI CGTACG 1 cut(s) 666
PspN4I GGNNCC 5 cut(s) 8, 94, 388, 406, 808
PspPI GGNCC 3 cut(s) 357, 405, 738
PsuI RGATCY 2 cut(s) 533, 806
RsaI GTAC 5 cut(s) 8, 218, 230, 251, 668
RsaNI GTAC 5 cut(s) 7, 217, 229, 250, 667
RseI CAYNNNNRTG 3 cut(s) 384, 476, 524
SaqAI TTAA 3 cut(s) 180, 312, 659
SatI GCNGC 3 cut(s) 142, 337, 463
Sau3AI GATC 3 cut(s) 25, 533, 806
Sau96I GGNCC 3 cut(s) 357, 405, 738
SchI GAGTC 5 cut(s) 38, 217, 299, 753, 823
ScrFI CCNGG 5 cut(s) 247, 324, 341, 361, 538
SfaNI GCATC 1 cut(s) 487
SfcI CTRYAG 1 cut(s) 271
SinI GGWCC 2 cut(s) 405, 738
SmiMI CAYNNNNRTG 3 cut(s) 384, 476, 524
SmlI CTYRAG 1 cut(s) 444
SmoI CTYRAG 1 cut(s) 444
Sse9I AATT 2 cut(s) 151, 570
SsiI CCGC 2 cut(s) 59, 683
StyD4I CCNGG 5 cut(s) 245, 322, 339, 359, 536
TaaI ACNGT 5 cut(s) 14, 38, 254, 272, 509
TaiI ACGT 3 cut(s) 105, 402, 924
TaqI TCGA 4 cut(s) 65, 165, 206, 396
TasI AATT 2 cut(s) 151, 570
TatI WGTACW 2 cut(s) 216, 228
TfiI GAWTC 2 cut(s) 76, 422
Tru1I TTAA 3 cut(s) 180, 312, 659
Tru9I TTAA 3 cut(s) 180, 312, 659
TscAI CASTG 2 cut(s) 231, 306
TseFI GTSAC 1 cut(s) 509
TseI GCWGC 3 cut(s) 141, 336, 462
Tsp45I GTSAC 1 cut(s) 509
TspDTI ATGAA 2 cut(s) 68, 421
TspGWI ACGGA 1 cut(s) 558
TspRI CASTG 2 cut(s) 231, 306
VpaK11BI GGWCC 2 cut(s) 405, 738
XceI RCATGY 1 cut(s) 847
XmiI GTMKAC 1 cut(s) 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.