Rroxscaffold_6G00401660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0018169
Physical Location & Seq
Reverse (-)
24056012 .. 24057890
1879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00401660.1

Sequence Viewer

Length: 486 bp
ATGGATCTCTCTGGACATACGATATTGAAATATTCCCTTGCAATGGCTACCAAGGCAAGTTCTACAACTTTGATATTTCGGCCAGAGGCCTCGAGAAAAAGCCTCAATCACTGTGTTTACTCGCCGAGATCATCAAGGGCTGTGAGTGGAAGAATGCTGGGCGTCGACTCATTTAGTTCTAAATTCGGGCTTATATTGGCGGCAACAAGATCATTCAAGGTTAGCAGAGTCGGTTCTCATTTGTCTCAGAGAGTTAGAGAGCTCAAGATTTTCAGAGACGAGGACAAAGTAGTGGAGAAGATCAAGATTCGAGTCATTTCGATTTCACCTGATGAGATCGCTTTTGGTATAAGTATTCTCACTGCCATAAATTATTATAATTGTGCTAAATTGTTTCAACACAAGATTATGAGGCATGATGATCAAGATGTTGGTAGTTTAGTACTACATTTGGTTAAGAAAGCTTTCAAGCTTGGAGAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

18.04

Weight (kDa)

10.01

Isoelectric Point (pI)

29.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018169)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0480271
rosa_laevigata RLG00000023503 RLG00000023504 RLG00000023506
rosa_roxburghii Rroxscaffold_6G00401650 Rroxscaffold_6G00401660
rosa_samantha Rh3AG233300 Rh3CG263500 Rh3DG259100 Rh3DG259200
rosa_wichuraiana Rw3G020990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 378
AccI GTMKAC 1 cut(s) 165
AciI CCGC 1 cut(s) 200
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 80
AcsI RAATTY 1 cut(s) 182
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 1 cut(s) 444
AfiI CCNNNNNNNGG 1 cut(s) 43
AgsI TTSAA 4 cut(s) 28, 217, 398, 469
AluBI AGCT 4 cut(s) 262, 464, 472, 481
AluI AGCT 4 cut(s) 262, 464, 472, 481
Alw21I GWGCWC 1 cut(s) 264
Alw26I GTCTC 2 cut(s) 249, 270
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 91
AoxI GGCC 2 cut(s) 80, 87
ApoI RAATTY 1 cut(s) 182
Asp700I GAANNNNTTC 1 cut(s) 464
AsuHPI GGTGA 1 cut(s) 318
AvaI CYCGRG 1 cut(s) 91
BanII GRGCYC 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 264
BclI TGATCA 1 cut(s) 421
BcoDI GTCTC 2 cut(s) 249, 270
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
BmcAI AGTACT 1 cut(s) 444
BmeT110I CYCGRG 1 cut(s) 91
BpuEI CTTGAG 1 cut(s) 248
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 51
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse3DI GCAATG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 260
BseYI CCCAGC 1 cut(s) 157
BshFI GGCC 2 cut(s) 82, 89
BsiHKAI GWGCWC 1 cut(s) 264
BsiHKCI CYCGRG 1 cut(s) 91
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 2 cut(s) 249, 270
BsmBI CGTCTC 1 cut(s) 270
BsmI GAATGC 1 cut(s) 159
BsnI GGCC 2 cut(s) 82, 89
BsoBI CYCGRG 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 6 cut(s) 4, 128, 209, 300, 336, 421
BspACI CCGC 1 cut(s) 200
BspANI GGCC 2 cut(s) 82, 89
BspCNI CTCAG 1 cut(s) 259
BspPI GGATC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 6 cut(s) 4, 128, 209, 300, 336, 421
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 113
BstACI GRCGYC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 246
BstKTI GATC 6 cut(s) 7, 131, 212, 303, 339, 424
BstMAI GTCTC 2 cut(s) 249, 270
BstMBI GATC 6 cut(s) 4, 128, 209, 300, 336, 421
BstMWI GCNNNNNNNGC 2 cut(s) 53, 478
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 2 cut(s) 82, 89
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 2 cut(s) 109, 360
CseI GACGC 1 cut(s) 151
Csp6I GTAC 1 cut(s) 443
CviAII CATG 1 cut(s) 416
CviQI GTAC 1 cut(s) 443
DdeI CTNAG 1 cut(s) 246
DpnI GATC 6 cut(s) 6, 130, 211, 302, 338, 423
DpnII GATC 6 cut(s) 4, 128, 209, 300, 336, 421
EaeI YGGCCR 1 cut(s) 80
Ecl136II GAGCTC 1 cut(s) 262
Eco130I CCWWGG 1 cut(s) 51
Eco147I AGGCCT 1 cut(s) 89
Eco24I GRGCYC 1 cut(s) 264
Eco53kI GAGCTC 1 cut(s) 262
Eco88I CYCGRG 1 cut(s) 91
EcoICRI GAGCTC 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 51
EcoT38I GRGCYC 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 51
Esp3I CGTCTC 1 cut(s) 270
FaeI CATG 1 cut(s) 419
FaiI YATR 7 cut(s) 18, 194, 350, 368, 378, 410, 417
FatI CATG 1 cut(s) 415
FbaI TGATCA 1 cut(s) 421
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 201
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 201
GsaI CCCAGC 1 cut(s) 161
HaeIII GGCC 2 cut(s) 82, 89
HgaI GACGC 1 cut(s) 151
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 1 cut(s) 419
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HindIII AAGCTT 2 cut(s) 462, 470
HinfI GANTC 4 cut(s) 167, 228, 307, 312
HphI GGTGA 1 cut(s) 318
Hpy166II GTNNAC 2 cut(s) 118, 166
Hpy188I TCNGA 2 cut(s) 249, 275
Hpy188III TCNNGA 5 cut(s) 12, 93, 265, 304, 425
Hpy8I GTNNAC 2 cut(s) 118, 166
Hpy99I CGWCG 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4V TGCA 1 cut(s) 41
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 478
HpyF3I CTNAG 1 cut(s) 246
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 1 cut(s) 419
Ksp22I TGATCA 1 cut(s) 421
Kzo9I GATC 6 cut(s) 4, 128, 209, 300, 336, 421
LpnPI CCDG 3 cut(s) 96, 143, 342
MalI GATC 6 cut(s) 6, 130, 211, 302, 338, 423
MboI GATC 6 cut(s) 4, 128, 209, 300, 336, 421
MboII GAAGA 2 cut(s) 162, 310
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 4 cut(s) 182, 370, 379, 389
MlyI GAGTC 3 cut(s) 161, 237, 321
MnlI CCTC 5 cut(s) 79, 100, 113, 274, 405
MroXI GAANNNNTTC 1 cut(s) 464
MseI TTAA 1 cut(s) 456
Mva1269I GAATGC 1 cut(s) 159
MwoI GCNNNNNNNGC 2 cut(s) 53, 478
NdeII GATC 6 cut(s) 4, 128, 209, 300, 336, 421
NlaIII CATG 1 cut(s) 419
NmeAIII GCCGAG 1 cut(s) 150
PaeR7I CTCGAG 1 cut(s) 91
PceI AGGCCT 1 cut(s) 89
PctI GAATGC 1 cut(s) 159
PdmI GAANNNNTTC 1 cut(s) 464
PfeI GAWTC 1 cut(s) 307
PkrI GCNGC 1 cut(s) 202
PleI GAGTC 3 cut(s) 161, 236, 320
PpsI GAGTC 3 cut(s) 161, 236, 320
PsiI TTATAA 1 cut(s) 378
Psp124BI GAGCTC 1 cut(s) 264
PspFI CCCAGC 1 cut(s) 157
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 444
RsaNI GTAC 1 cut(s) 443
SacI GAGCTC 1 cut(s) 264
SalI GTCGAC 1 cut(s) 164
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 6 cut(s) 4, 128, 209, 300, 336, 421
ScaI AGTACT 1 cut(s) 444
SchI GAGTC 3 cut(s) 161, 237, 321
SduI GDGCHC 1 cut(s) 264
SetI ASST 6 cut(s) 222, 264, 331, 466, 474, 483
Sfr274I CTCGAG 1 cut(s) 91
SlaI CTCGAG 1 cut(s) 91
SmlI CTYRAG 2 cut(s) 91, 263
SmoI CTYRAG 2 cut(s) 91, 263
Sse9I AATT 4 cut(s) 182, 370, 379, 389
SseBI AGGCCT 1 cut(s) 89
SsiI CCGC 1 cut(s) 200
SspI AATATT 1 cut(s) 32
SstI GAGCTC 1 cut(s) 264
StuI AGGCCT 1 cut(s) 89
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 113
TaqI TCGA 4 cut(s) 92, 165, 310, 320
TasI AATT 4 cut(s) 182, 370, 379, 389
TatI WGTACW 1 cut(s) 442
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 1 cut(s) 307
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TscAI CASTG 2 cut(s) 116, 367
TspRI CASTG 2 cut(s) 116, 367
XapI RAATTY 1 cut(s) 182
XhoI CTCGAG 1 cut(s) 91
XmiI GTMKAC 1 cut(s) 165
XmnI GAANNNNTTC 1 cut(s) 464
ZrmI AGTACT 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.