Rh3DG259100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0018169
Physical Location & Seq
Forward (+)
25636837 .. 25639400
2564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG259100.1

Sequence Viewer

Length: 657 bp
ATGGCTACCAAGGCAAGTTCACAAAGCCCTACAACTTTGATATTTCGGCCAGAGGCCTCAAGAAAAAGCCTCAATCACTGTGTTTACTCGCCGAGATCATCAAGGGCTGCAATTGGTCAGTTCATCATGAATTTTTCTGAAGAAAAGTTGATGGAGTTTATCAGTGCGGAGTATCCTTATGAATCTGATGTGCATGACAATAAACTCTGTCTTGGGGAAATTTCTATCGACCTGAGGCTTTGTGGTCTTTCTCTCACATGTTTGAGTGTTACCATGCCATACCAGCGTGATGTGATTGCCTCCTCTGTTGGTCATATTGACGTCTATAATGCAGATGTAGACAAAAAAGGCGACGCACCTATATTCTCGTGTCCTGTTGTTGGAGATTCTTTAGTCGTTGACATTCAAAAGCCAATCAACCATCCTTTCCATGTGTACTTGGATCTTTCTGAAACTATGAAGAACCTCACTATATCTTATGATCTTGAAGATGTGGAAATGCCTGCTGTGAATGGAAAAACTGTCTACAAGGCTGCTGATTTTAGTACTTGTGACGATAAAATTAGAATCTTTGATCGTACCTGCTTGGAAGAAATAATCATATGTGATGCTTCTGTTATGGATTACGATTTTGATGGCTTCATATATAGGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

24.47

Weight (kDa)

4.7

Isoelectric Point (pI)

44.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018169)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0480271
rosa_laevigata RLG00000023503 RLG00000023504 RLG00000023506
rosa_roxburghii Rroxscaffold_6G00401650 Rroxscaffold_6G00401660
rosa_samantha Rh3AG233300 Rh3CG263500 Rh3DG259100 Rh3DG259200
rosa_wichuraiana Rw3G020990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 324
Acc36I ACCTGC 1 cut(s) 590
AccI GTMKAC 2 cut(s) 339, 525
AciI CCGC 1 cut(s) 167
AclWI GGATC 1 cut(s) 450
AcoI YGGCCR 1 cut(s) 47
AcsI RAATTY 2 cut(s) 130, 219
AcuI CTGAAG 1 cut(s) 159
AcyI GRCGYC 1 cut(s) 321
AfaI GTAC 3 cut(s) 437, 547, 580
AfiI CCNNNNNNNGG 1 cut(s) 380
AflIII ACRYGT 1 cut(s) 257
AgsI TTSAA 2 cut(s) 407, 488
AlwI GGATC 1 cut(s) 450
AoxI GGCC 2 cut(s) 47, 54
ApeKI GCWGC 2 cut(s) 107, 533
ApoI RAATTY 2 cut(s) 130, 219
AxyI CCTNAGG 1 cut(s) 233
BauI CACGAG 1 cut(s) 367
BbvI GCAGC 2 cut(s) 94, 520
BccI CCATC 3 cut(s) 145, 429, 629
BciVI GTATCC 1 cut(s) 183
BfmI CTRYAG 1 cut(s) 653
BfuAI ACCTGC 1 cut(s) 590
BfuI GTATCC 1 cut(s) 183
BisI GCNGC 2 cut(s) 108, 534
BlsI GCNGC 2 cut(s) 109, 535
BmcAI AGTACT 1 cut(s) 547
BmsI GCATC 1 cut(s) 598
BpuEI CTTGAG 1 cut(s) 43
BsaHI GRCGYC 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 9
Bsc4I CCNNNNNNNGG 1 cut(s) 380
Bse21I CCTNAGG 1 cut(s) 233
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 1 cut(s) 421
BseLI CCNNNNNNNGG 1 cut(s) 380
BseMII CTCAG 1 cut(s) 224
BseRI GAGGAG 1 cut(s) 292
BseXI GCAGC 2 cut(s) 94, 520
BshFI GGCC 2 cut(s) 49, 56
BslI CCNNNNNNNGG 1 cut(s) 380
BsnI GGCC 2 cut(s) 49, 56
Bsp143I GATC 4 cut(s) 95, 442, 481, 574
BspACI CCGC 1 cut(s) 167
BspANI GGCC 2 cut(s) 49, 56
BspCNI CTCAG 1 cut(s) 225
BspHI TCATGA 1 cut(s) 126
BspMI ACCTGC 1 cut(s) 590
BspPI GGATC 1 cut(s) 450
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 4 cut(s) 95, 442, 481, 574
BssNI GRCGYC 1 cut(s) 321
BssSI CACGAG 1 cut(s) 367
BssT1I CCWWGG 1 cut(s) 9
Bst2BI CACGAG 1 cut(s) 367
Bst4CI ACNGT 2 cut(s) 80, 523
BstACI GRCGYC 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 504
BstDEI CTNAG 1 cut(s) 233
BstF5I GGATG 1 cut(s) 421
BstKTI GATC 4 cut(s) 98, 445, 484, 577
BstMBI GATC 4 cut(s) 95, 442, 481, 574
BstMWI GCNNNNNNNGC 2 cut(s) 11, 283
BstNSI RCATGY 1 cut(s) 261
BstSFI CTRYAG 1 cut(s) 653
BstV1I GCAGC 2 cut(s) 94, 520
BstX2I RGATCY 1 cut(s) 442
BstYI RGATCY 1 cut(s) 442
Bsu36I CCTNAGG 1 cut(s) 233
BsuI GTATCC 1 cut(s) 183
BsuRI GGCC 2 cut(s) 49, 56
BtsCI GGATG 1 cut(s) 421
BtsIMutI CAGTG 2 cut(s) 76, 169
BveI ACCTGC 1 cut(s) 590
Cac8I GCNNGC 1 cut(s) 504
CciI TCATGA 1 cut(s) 126
CseI GACGC 1 cut(s) 362
Csp6I GTAC 3 cut(s) 436, 546, 579
CviAII CATG 5 cut(s) 127, 194, 258, 274, 431
CviQI GTAC 3 cut(s) 436, 546, 579
DdeI CTNAG 1 cut(s) 233
DpnI GATC 4 cut(s) 97, 444, 483, 576
DpnII GATC 4 cut(s) 95, 442, 481, 574
EaeI YGGCCR 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 9
Eco147I AGGCCT 1 cut(s) 56
Eco57I CTGAAG 1 cut(s) 159
Eco81I CCTNAGG 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 5 cut(s) 130, 197, 261, 277, 434
FatI CATG 5 cut(s) 126, 193, 257, 273, 430
FauNDI CATATG 1 cut(s) 602
FblI GTMKAC 2 cut(s) 339, 525
Fnu4HI GCNGC 2 cut(s) 108, 534
FokI GGATG 1 cut(s) 408
Fsp4HI GCNGC 2 cut(s) 108, 534
GluI GCNGC 2 cut(s) 108, 534
HaeIII GGCC 2 cut(s) 49, 56
HgaI GACGC 1 cut(s) 362
Hin1I GRCGYC 1 cut(s) 321
Hin1II CATG 5 cut(s) 130, 197, 261, 277, 434
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HinfI GANTC 3 cut(s) 182, 386, 567
Hpy166II GTNNAC 6 cut(s) 20, 85, 340, 400, 436, 526
Hpy188I TCNGA 3 cut(s) 139, 187, 451
Hpy188III TCNNGA 3 cut(s) 60, 127, 485
Hpy8I GTNNAC 6 cut(s) 20, 85, 340, 400, 436, 526
Hpy99I CGWCG 1 cut(s) 356
HpyCH4III ACNGT 2 cut(s) 80, 523
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 3 cut(s) 110, 193, 332
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 283
HpyF3I CTNAG 1 cut(s) 233
HpySE526I ACGT 1 cut(s) 321
Hsp92I GRCGYC 1 cut(s) 321
Hsp92II CATG 5 cut(s) 130, 197, 261, 277, 434
Kzo9I GATC 4 cut(s) 95, 442, 481, 574
LpnPI CCDG 6 cut(s) 63, 245, 296, 387, 516, 595
Lsp1109I GCAGC 2 cut(s) 94, 520
LweI GCATC 1 cut(s) 598
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 2 cut(s) 268, 551
MalI GATC 4 cut(s) 97, 444, 483, 576
MboI GATC 4 cut(s) 95, 442, 481, 574
MboII GAAGA 4 cut(s) 152, 472, 500, 602
MfeI CAATTG 1 cut(s) 111
MflI RGATCY 1 cut(s) 442
MluCI AATT 4 cut(s) 111, 130, 219, 561
MmeI TCCRAC 1 cut(s) 361
MnlI CCTC 7 cut(s) 46, 67, 80, 228, 310, 313, 476
MunI CAATTG 1 cut(s) 111
MwoI GCNNNNNNNGC 2 cut(s) 11, 283
NdeI CATATG 1 cut(s) 602
NdeII GATC 4 cut(s) 95, 442, 481, 574
NlaIII CATG 5 cut(s) 130, 197, 261, 277, 434
NmeAIII GCCGAG 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 551
NspI RCATGY 1 cut(s) 261
PagI TCATGA 1 cut(s) 126
PceI AGGCCT 1 cut(s) 56
PciI ACATGT 1 cut(s) 257
PfeI GAWTC 3 cut(s) 182, 386, 567
PkrI GCNGC 2 cut(s) 109, 535
PscI ACATGT 1 cut(s) 257
PsuI RGATCY 1 cut(s) 442
RsaI GTAC 3 cut(s) 437, 547, 580
RsaNI GTAC 3 cut(s) 436, 546, 579
SatI GCNGC 2 cut(s) 108, 534
Sau3AI GATC 4 cut(s) 95, 442, 481, 574
ScaI AGTACT 1 cut(s) 547
SetI ASST 5 cut(s) 234, 324, 361, 468, 584
SfaNI GCATC 1 cut(s) 598
SfcI CTRYAG 1 cut(s) 653
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 4 cut(s) 111, 130, 219, 561
SseBI AGGCCT 1 cut(s) 56
SsiI CCGC 1 cut(s) 167
StuI AGGCCT 1 cut(s) 56
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 2 cut(s) 80, 523
TaiI ACGT 1 cut(s) 324
TaqI TCGA 1 cut(s) 228
TasI AATT 4 cut(s) 111, 130, 219, 561
TatI WGTACW 2 cut(s) 435, 545
TfiI GAWTC 3 cut(s) 182, 386, 567
TscAI CASTG 2 cut(s) 83, 169
TseFI GTSAC 1 cut(s) 551
TseI GCWGC 2 cut(s) 107, 533
Tsp45I GTSAC 1 cut(s) 551
TspDTI ATGAA 5 cut(s) 112, 143, 195, 473, 631
TspRI CASTG 2 cut(s) 83, 169
XapI RAATTY 2 cut(s) 130, 219
XceI RCATGY 1 cut(s) 261
XmiI GTMKAC 2 cut(s) 339, 525
ZraI GACGTC 1 cut(s) 322
ZrmI AGTACT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.