LRR-repeat protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr3g0480271 |
| rosa_laevigata | RLG00000023503 RLG00000023504 RLG00000023506 |
| rosa_roxburghii | Rroxscaffold_6G00401650 Rroxscaffold_6G00401660 |
| rosa_samantha | Rh3AG233300 Rh3CG263500 Rh3DG259100 Rh3DG259200 |
| rosa_wichuraiana | Rw3G020990 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 198 |
| Acc36I | ACCTGC | 1 cut(s) | 464 |
| AccI | GTMKAC | 4 cut(s) | 198, 213, 399, 978 |
| AciI | CCGC | 2 cut(s) | 41, 1032 |
| AclWI | GGATC | 1 cut(s) | 324 |
| AcsI | RAATTY | 4 cut(s) | 4, 718, 740, 841 |
| AcuI | CTGAAG | 1 cut(s) | 33 |
| AcyI | GRCGYC | 1 cut(s) | 195 |
| AfaI | GTAC | 2 cut(s) | 311, 454 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 254 |
| AflIII | ACRYGT | 2 cut(s) | 131, 538 |
| AgsI | TTSAA | 8 cut(s) | 281, 362, 607, 625, 649, 717, 785, 995 |
| AluBI | AGCT | 4 cut(s) | 340, 675, 789, 1007 |
| AluI | AGCT | 4 cut(s) | 340, 675, 789, 1007 |
| Alw21I | GWGCWC | 1 cut(s) | 538 |
| AlwI | GGATC | 1 cut(s) | 324 |
| Ama87I | CYCGRG | 1 cut(s) | 597 |
| ApeKI | GCWGC | 5 cut(s) | 407, 675, 678, 724, 1004 |
| ApoI | RAATTY | 4 cut(s) | 4, 718, 740, 841 |
| AspLEI | GCGC | 1 cut(s) | 581 |
| AsuHPI | GGTGA | 1 cut(s) | 869 |
| AvaI | CYCGRG | 1 cut(s) | 597 |
| AxyI | CCTNAGG | 1 cut(s) | 107 |
| BauI | CACGAG | 1 cut(s) | 241 |
| Bbv12I | GWGCWC | 1 cut(s) | 538 |
| BbvI | GCAGC | 5 cut(s) | 394, 662, 665, 711, 1016 |
| BccI | CCATC | 4 cut(s) | 19, 303, 503, 569 |
| BciVI | GTATCC | 1 cut(s) | 57 |
| BfaI | CTAG | 1 cut(s) | 527 |
| BfoI | RGCGCY | 1 cut(s) | 582 |
| BfuAI | ACCTGC | 1 cut(s) | 464 |
| BfuI | GTATCC | 1 cut(s) | 57 |
| BisI | GCNGC | 6 cut(s) | 408, 676, 679, 725, 1005, 1032 |
| BlsI | GCNGC | 6 cut(s) | 409, 677, 680, 726, 1006, 1033 |
| BmeT110I | CYCGRG | 1 cut(s) | 597 |
| BmiI | GGNNCC | 1 cut(s) | 638 |
| BmsI | GCATC | 2 cut(s) | 472, 1043 |
| BpuEI | CTTGAG | 1 cut(s) | 857 |
| BsaHI | GRCGYC | 1 cut(s) | 195 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 254 |
| Bse21I | CCTNAGG | 1 cut(s) | 107 |
| Bse3DI | GCAATG | 1 cut(s) | 1077 |
| BseGI | GGATG | 2 cut(s) | 295, 1034 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 254 |
| BseMI | GCAATG | 1 cut(s) | 1077 |
| BseMII | CTCAG | 1 cut(s) | 98 |
| BseRI | GAGGAG | 1 cut(s) | 707 |
| BseXI | GCAGC | 5 cut(s) | 394, 662, 665, 711, 1016 |
| BsgI | GTGCAG | 2 cut(s) | 1023, 1107 |
| BsiHKAI | GWGCWC | 1 cut(s) | 538 |
| BsiHKCI | CYCGRG | 1 cut(s) | 597 |
| BslFI | GGGAC | 1 cut(s) | 679 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 254 |
| BsmFI | GGGAC | 1 cut(s) | 679 |
| BsmI | GAATGC | 2 cut(s) | 755, 924 |
| BsoBI | CYCGRG | 1 cut(s) | 597 |
| Bsp1286I | GDGCHC | 1 cut(s) | 538 |
| Bsp143I | GATC | 4 cut(s) | 316, 355, 448, 868 |
| BspACI | CCGC | 2 cut(s) | 41, 1032 |
| BspCNI | CTCAG | 1 cut(s) | 99 |
| BspHI | TCATGA | 1 cut(s) | 958 |
| BspLI | GGNNCC | 1 cut(s) | 638 |
| BspMI | ACCTGC | 1 cut(s) | 464 |
| BspPI | GGATC | 1 cut(s) | 324 |
| BsrDI | GCAATG | 1 cut(s) | 1077 |
| BssMI | GATC | 4 cut(s) | 316, 355, 448, 868 |
| BssNAI | GTATAC | 1 cut(s) | 979 |
| BssNI | GRCGYC | 1 cut(s) | 195 |
| BssSI | CACGAG | 1 cut(s) | 241 |
| Bst1107I | GTATAC | 1 cut(s) | 979 |
| Bst2BI | CACGAG | 1 cut(s) | 241 |
| Bst4CI | ACNGT | 3 cut(s) | 397, 661, 1001 |
| BstACI | GRCGYC | 1 cut(s) | 195 |
| BstC8I | GCNNGC | 1 cut(s) | 378 |
| BstDEI | CTNAG | 3 cut(s) | 107, 571, 671 |
| BstF5I | GGATG | 2 cut(s) | 295, 1034 |
| BstH2I | RGCGCY | 1 cut(s) | 582 |
| BstHHI | GCGC | 1 cut(s) | 581 |
| BstKTI | GATC | 4 cut(s) | 319, 358, 451, 871 |
| BstMBI | GATC | 4 cut(s) | 316, 355, 448, 868 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 157, 587 |
| BstNSI | RCATGY | 3 cut(s) | 135, 542, 565 |
| BstV1I | GCAGC | 5 cut(s) | 394, 662, 665, 711, 1016 |
| BstX2I | RGATCY | 1 cut(s) | 316 |
| BstYI | RGATCY | 1 cut(s) | 316 |
| BstZ17I | GTATAC | 1 cut(s) | 979 |
| Bsu36I | CCTNAGG | 1 cut(s) | 107 |
| BsuI | GTATCC | 1 cut(s) | 57 |
| BtsCI | GGATG | 2 cut(s) | 295, 1034 |
| BtsIMutI | CAGTG | 2 cut(s) | 43, 657 |
| BveI | ACCTGC | 1 cut(s) | 464 |
| Cac8I | GCNNGC | 1 cut(s) | 378 |
| CciI | TCATGA | 1 cut(s) | 958 |
| CfoI | GCGC | 1 cut(s) | 581 |
| CseI | GACGC | 1 cut(s) | 236 |
| Csp6I | GTAC | 2 cut(s) | 310, 453 |
| CviQI | GTAC | 2 cut(s) | 310, 453 |
| DdeI | CTNAG | 3 cut(s) | 107, 571, 671 |
| DpnI | GATC | 4 cut(s) | 318, 357, 450, 870 |
| DpnII | GATC | 4 cut(s) | 316, 355, 448, 868 |
| DraI | TTTAAA | 1 cut(s) | 847 |
| Eco57I | CTGAAG | 1 cut(s) | 33 |
| Eco81I | CCTNAGG | 1 cut(s) | 107 |
| Eco88I | CYCGRG | 1 cut(s) | 597 |
| EcoRI | GAATTC | 1 cut(s) | 740 |
| FaqI | GGGAC | 1 cut(s) | 679 |
| FauNDI | CATATG | 1 cut(s) | 476 |
| FblI | GTMKAC | 4 cut(s) | 198, 213, 399, 978 |
| Fnu4HI | GCNGC | 6 cut(s) | 408, 676, 679, 725, 1005, 1032 |
| FokI | GGATG | 2 cut(s) | 282, 1021 |
| Fsp4HI | GCNGC | 6 cut(s) | 408, 676, 679, 725, 1005, 1032 |
| FspBI | CTAG | 1 cut(s) | 527 |
| GlaI | GCGC | 1 cut(s) | 580 |
| GluI | GCNGC | 6 cut(s) | 408, 676, 679, 725, 1005, 1032 |
| HaeII | RGCGCY | 1 cut(s) | 582 |
| HgaI | GACGC | 1 cut(s) | 236 |
| HhaI | GCGC | 1 cut(s) | 581 |
| Hin1I | GRCGYC | 1 cut(s) | 195 |
| Hin6I | GCGC | 1 cut(s) | 579 |
| HinP1I | GCGC | 1 cut(s) | 579 |
| HincII | GTYRAC | 1 cut(s) | 274 |
| HindII | GTYRAC | 1 cut(s) | 274 |
| HinfI | GANTC | 4 cut(s) | 56, 260, 441, 943 |
| HphI | GGTGA | 1 cut(s) | 869 |
| Hpy166II | GTNNAC | 7 cut(s) | 199, 214, 274, 310, 400, 979, 1012 |
| Hpy188I | TCNGA | 4 cut(s) | 13, 61, 325, 930 |
| Hpy188III | TCNNGA | 4 cut(s) | 359, 634, 782, 959 |
| Hpy8I | GTNNAC | 7 cut(s) | 199, 214, 274, 310, 400, 979, 1012 |
| Hpy99I | CGWCG | 1 cut(s) | 230 |
| HpyCH4III | ACNGT | 3 cut(s) | 397, 661, 1001 |
| HpyCH4IV | ACGT | 2 cut(s) | 195, 1017 |
| HpyCH4V | TGCA | 7 cut(s) | 67, 206, 565, 802, 1004, 1070, 1088 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 157, 587 |
| HpyF3I | CTNAG | 3 cut(s) | 107, 571, 671 |
| HpySE526I | ACGT | 2 cut(s) | 195, 1017 |
| Hsp92I | GRCGYC | 1 cut(s) | 195 |
| HspAI | GCGC | 1 cut(s) | 579 |
| Kzo9I | GATC | 4 cut(s) | 316, 355, 448, 868 |
| LmnI | GCTCC | 1 cut(s) | 794 |
| Lsp1109I | GCAGC | 5 cut(s) | 394, 662, 665, 711, 1016 |
| LweI | GCATC | 2 cut(s) | 472, 1043 |
| MaeI | CTAG | 1 cut(s) | 527 |
| MaeII | ACGT | 2 cut(s) | 195, 1017 |
| MaeIII | GTNAC | 1 cut(s) | 142 |
| MalI | GATC | 4 cut(s) | 318, 357, 450, 870 |
| MboI | GATC | 4 cut(s) | 316, 355, 448, 868 |
| MboII | GAAGA | 6 cut(s) | 26, 346, 374, 440, 476, 872 |
| MflI | RGATCY | 1 cut(s) | 316 |
| MhlI | GDGCHC | 1 cut(s) | 538 |
| MluCI | AATT | 7 cut(s) | 4, 435, 620, 718, 740, 764, 841 |
| MlyI | GAGTC | 1 cut(s) | 937 |
| MmeI | TCCRAC | 3 cut(s) | 235, 529, 740 |
| MnlI | CCTC | 4 cut(s) | 102, 184, 601, 685 |
| MseI | TTAA | 3 cut(s) | 686, 846, 1077 |
| MspA1I | CMGCKG | 1 cut(s) | 1007 |
| Mva1269I | GAATGC | 2 cut(s) | 755, 924 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 157, 587 |
| NdeI | CATATG | 1 cut(s) | 476 |
| NdeII | GATC | 4 cut(s) | 316, 355, 448, 868 |
| NlaIV | GGNNCC | 1 cut(s) | 638 |
| NspI | RCATGY | 3 cut(s) | 135, 542, 565 |
| PaeR7I | CTCGAG | 1 cut(s) | 597 |
| PagI | TCATGA | 1 cut(s) | 958 |
| PciI | ACATGT | 2 cut(s) | 131, 538 |
| PctI | GAATGC | 2 cut(s) | 755, 924 |
| PfeI | GAWTC | 3 cut(s) | 56, 260, 441 |
| PkrI | GCNGC | 6 cut(s) | 409, 677, 680, 726, 1006, 1033 |
| PleI | GAGTC | 1 cut(s) | 937 |
| PpsI | GAGTC | 1 cut(s) | 937 |
| PscI | ACATGT | 2 cut(s) | 131, 538 |
| PspN4I | GGNNCC | 1 cut(s) | 638 |
| PspXI | VCTCGAGB | 1 cut(s) | 597 |
| PsuI | RGATCY | 1 cut(s) | 316 |
| PvuII | CAGCTG | 1 cut(s) | 1007 |
| RsaI | GTAC | 2 cut(s) | 311, 454 |
| RsaNI | GTAC | 2 cut(s) | 310, 453 |
| SaqAI | TTAA | 3 cut(s) | 686, 846, 1077 |
| SatI | GCNGC | 6 cut(s) | 408, 676, 679, 725, 1005, 1032 |
| Sau3AI | GATC | 4 cut(s) | 316, 355, 448, 868 |
| SchI | GAGTC | 1 cut(s) | 937 |
| SduI | GDGCHC | 1 cut(s) | 538 |
| SfaNI | GCATC | 2 cut(s) | 472, 1043 |
| Sfr274I | CTCGAG | 1 cut(s) | 597 |
| SlaI | CTCGAG | 1 cut(s) | 597 |
| SmlI | CTYRAG | 2 cut(s) | 597, 836 |
| SmoI | CTYRAG | 2 cut(s) | 597, 836 |
| Sse9I | AATT | 7 cut(s) | 4, 435, 620, 718, 740, 764, 841 |
| SsiI | CCGC | 2 cut(s) | 41, 1032 |
| SspMI | CTAG | 1 cut(s) | 527 |
| TaaI | ACNGT | 3 cut(s) | 397, 661, 1001 |
| TaiI | ACGT | 2 cut(s) | 198, 1020 |
| TaqI | TCGA | 2 cut(s) | 102, 598 |
| TasI | AATT | 7 cut(s) | 4, 435, 620, 718, 740, 764, 841 |
| TatI | WGTACW | 1 cut(s) | 309 |
| TauI | GCSGC | 1 cut(s) | 1034 |
| TfiI | GAWTC | 3 cut(s) | 56, 260, 441 |
| Tru1I | TTAA | 3 cut(s) | 686, 846, 1077 |
| Tru9I | TTAA | 3 cut(s) | 686, 846, 1077 |
| TscAI | CASTG | 2 cut(s) | 43, 664 |
| TseI | GCWGC | 5 cut(s) | 407, 675, 678, 724, 1004 |
| TspDTI | ATGAA | 7 cut(s) | 17, 69, 347, 505, 668, 762, 947 |
| TspRI | CASTG | 2 cut(s) | 43, 664 |
| XapI | RAATTY | 4 cut(s) | 4, 718, 740, 841 |
| XceI | RCATGY | 3 cut(s) | 135, 542, 565 |
| XhoI | CTCGAG | 1 cut(s) | 597 |
| XmiI | GTMKAC | 4 cut(s) | 198, 213, 399, 978 |
| XspI | CTAG | 1 cut(s) | 527 |
| ZraI | GACGTC | 1 cut(s) | 196 |