Rh3CG263500

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0018169
Physical Location & Seq
Forward (+)
25721080 .. 25722317
1238 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG263500.1

Sequence Viewer

Length: 1014 bp
ATGAATTTTTCTGAAGAAAAGTTGATGGAGTTTATCAGTGCGGAGTATCCTTATGAATCTGATGTGCATGACAATAAACTCTGTCTTGGGGAAATTTCTATCGACCTGAGGCTTTGTGGTCTTTCTCTCACATGTTTGAGTGTTACCATGCCATACCAGCCTGATGTGATTGCCTCCTCTGTTGGTCATATTGACGTCTATAATGCAGATGTAGACAAAAAAGGCGACGCACCTATATTCTCGTGTCCTGTTGTTGGAGATTCTTTAGTCGTTGACATTCAAAAGCCAATCAACCATCCATTCCATGTGTACTTGGATCTTTCTGAAACTATGAAGAACCTCACTATATCTTATGATCTTGAAGATGTGGAAATGCTTGCTGTGAATGGAAAAACTGTCTACAAGGCTGCTGATTTTAGTACTTGTGACGATACAATTAGAATCTTTGATCGTACCTGCTTGGAAGAAATAATCATATGTGATGCTTCTGTTATGGATTACGATTTTGATGGCTTCATATATAGGCTAGAGAGAGCACATGTGGTGGTTGGACGGGCATACATGCACTATTTAGATGGCGCGGATGTAGCTTCTGCTCGAGCATTGAAACTGATCACTGAATTGAAAAATGTCAGGAACCTGACTTTGAACATGAACACTGTTGGGACACTTAGCTGCTGCTTGTTAAATGAGGAGAGCAACTTGCCTATATTTTCAAATTTGCTGCTTTTGGAAATGGAATTCCGTGAATGCTTCGGTTGGAAATTGCTGTTCAGTTTTCTTGAAAGCGCCCCTGCTTTGCAGGAAGTAATCATTCGCAAGGTAGATGATGACCTTGAGAACTTTAAATACAAAGGTCAAGAACATGATCTCTTTACAACTTTGACACTACCCCAGAAAGTTCCAAGTAGTCTGCTAACAAGCATTCAGATTATTGAGATGACTGTGCCTGTGCTTCATGAGAAAGATGATGATATGTTTTCCAATATATTGTTGAAAATGGTGCAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

337

Amino Acids

38.17

Weight (kDa)

4.5

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018169)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0480271
rosa_laevigata RLG00000023503 RLG00000023504 RLG00000023506
rosa_roxburghii Rroxscaffold_6G00401650 Rroxscaffold_6G00401660
rosa_samantha Rh3AG233300 Rh3CG263500 Rh3DG259100 Rh3DG259200
rosa_wichuraiana Rw3G020990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 198
Acc36I ACCTGC 1 cut(s) 464
AccI GTMKAC 2 cut(s) 213, 399
AccII CGCG 1 cut(s) 581
AciI CCGC 2 cut(s) 41, 581
AclWI GGATC 1 cut(s) 324
AcsI RAATTY 4 cut(s) 4, 93, 718, 740
AcuI CTGAAG 1 cut(s) 33
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 3 cut(s) 311, 421, 454
AfiI CCNNNNNNNGG 1 cut(s) 254
AflIII ACRYGT 2 cut(s) 131, 538
AgsI TTSAA 8 cut(s) 281, 362, 607, 625, 649, 717, 785, 997
AluBI AGCT 3 cut(s) 590, 675, 1009
AluI AGCT 3 cut(s) 590, 675, 1009
Alw21I GWGCWC 1 cut(s) 538
AlwI GGATC 1 cut(s) 324
Ama87I CYCGRG 1 cut(s) 597
ApeKI GCWGC 5 cut(s) 407, 675, 678, 724, 1006
ApoI RAATTY 4 cut(s) 4, 93, 718, 740
AspLEI GCGC 2 cut(s) 581, 791
AvaI CYCGRG 1 cut(s) 597
AxyI CCTNAGG 1 cut(s) 107
BauI CACGAG 1 cut(s) 241
Bbv12I GWGCWC 1 cut(s) 538
BbvI GCAGC 4 cut(s) 394, 662, 665, 711
BccI CCATC 4 cut(s) 19, 303, 503, 569
BciVI GTATCC 1 cut(s) 57
BclI TGATCA 1 cut(s) 612
BfaI CTAG 1 cut(s) 527
BfoI RGCGCY 1 cut(s) 792
BfuAI ACCTGC 1 cut(s) 464
BfuI GTATCC 1 cut(s) 57
BisI GCNGC 5 cut(s) 408, 676, 679, 725, 1007
BlsI GCNGC 5 cut(s) 409, 677, 680, 726, 1008
BmcAI AGTACT 1 cut(s) 421
BmeT110I CYCGRG 1 cut(s) 597
BmiI GGNNCC 1 cut(s) 638
BmsI GCATC 1 cut(s) 472
BpuEI CTTGAG 1 cut(s) 857
BsaHI GRCGYC 1 cut(s) 195
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse21I CCTNAGG 1 cut(s) 107
BseGI GGATG 2 cut(s) 295, 589
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMII CTCAG 1 cut(s) 98
BseRI GAGGAG 2 cut(s) 166, 707
BseXI GCAGC 4 cut(s) 394, 662, 665, 711
Bsh1236I CGCG 1 cut(s) 581
BsiHKAI GWGCWC 1 cut(s) 538
BsiHKCI CYCGRG 1 cut(s) 597
BslFI GGGAC 1 cut(s) 679
BslI CCNNNNNNNGG 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 679
BsmI GAATGC 2 cut(s) 755, 924
BsoBI CYCGRG 1 cut(s) 597
Bsp1286I GDGCHC 1 cut(s) 538
Bsp143I GATC 5 cut(s) 316, 355, 448, 612, 868
BspACI CCGC 2 cut(s) 41, 581
BspCNI CTCAG 1 cut(s) 99
BspFNI CGCG 1 cut(s) 581
BspHI TCATGA 1 cut(s) 958
BspLI GGNNCC 1 cut(s) 638
BspMI ACCTGC 1 cut(s) 464
BspPI GGATC 1 cut(s) 324
BssMI GATC 5 cut(s) 316, 355, 448, 612, 868
BssNI GRCGYC 1 cut(s) 195
BssSI CACGAG 1 cut(s) 241
Bst2BI CACGAG 1 cut(s) 241
Bst4CI ACNGT 3 cut(s) 397, 661, 946
BstACI GRCGYC 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 378
BstDEI CTNAG 2 cut(s) 107, 671
BstF5I GGATG 2 cut(s) 295, 589
BstFNI CGCG 1 cut(s) 581
BstH2I RGCGCY 1 cut(s) 792
BstHHI GCGC 2 cut(s) 581, 791
BstKTI GATC 5 cut(s) 319, 358, 451, 615, 871
BstMBI GATC 5 cut(s) 316, 355, 448, 612, 868
BstMWI GCNNNNNNNGC 2 cut(s) 157, 587
BstNSI RCATGY 3 cut(s) 135, 542, 565
BstUI CGCG 1 cut(s) 581
BstV1I GCAGC 4 cut(s) 394, 662, 665, 711
BstX2I RGATCY 1 cut(s) 316
BstYI RGATCY 1 cut(s) 316
Bsu36I CCTNAGG 1 cut(s) 107
BsuI GTATCC 1 cut(s) 57
BtsCI GGATG 2 cut(s) 295, 589
BtsIMutI CAGTG 3 cut(s) 43, 615, 657
BveI ACCTGC 1 cut(s) 464
Cac8I GCNNGC 1 cut(s) 378
CciI TCATGA 1 cut(s) 958
CfoI GCGC 2 cut(s) 581, 791
CseI GACGC 1 cut(s) 236
Csp6I GTAC 3 cut(s) 310, 420, 453
CviAII CATG 9 cut(s) 68, 132, 148, 305, 539, 562, 652, 866, 959
CviJI RGCY 9 cut(s) 112, 160, 286, 407, 513, 526, 590, 675, 1009
CviKI_1 RGCY 9 cut(s) 112, 160, 286, 407, 513, 526, 590, 675, 1009
CviQI GTAC 3 cut(s) 310, 420, 453
DdeI CTNAG 2 cut(s) 107, 671
DpnI GATC 5 cut(s) 318, 357, 450, 614, 870
DpnII GATC 5 cut(s) 316, 355, 448, 612, 868
DraI TTTAAA 1 cut(s) 847
Eco57I CTGAAG 1 cut(s) 33
Eco81I CCTNAGG 1 cut(s) 107
Eco88I CYCGRG 1 cut(s) 597
EcoRI GAATTC 1 cut(s) 740
FaeI CATG 9 cut(s) 71, 135, 151, 308, 542, 565, 655, 869, 962
FaqI GGGAC 1 cut(s) 679
FatI CATG 9 cut(s) 67, 131, 147, 304, 538, 561, 651, 865, 958
FauNDI CATATG 1 cut(s) 476
FbaI TGATCA 1 cut(s) 612
FblI GTMKAC 2 cut(s) 213, 399
Fnu4HI GCNGC 5 cut(s) 408, 676, 679, 725, 1007
FokI GGATG 2 cut(s) 282, 596
Fsp4HI GCNGC 5 cut(s) 408, 676, 679, 725, 1007
FspBI CTAG 1 cut(s) 527
GlaI GCGC 2 cut(s) 580, 790
GluI GCNGC 5 cut(s) 408, 676, 679, 725, 1007
HaeII RGCGCY 1 cut(s) 792
HgaI GACGC 1 cut(s) 236
HhaI GCGC 2 cut(s) 581, 791
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 9 cut(s) 71, 135, 151, 308, 542, 565, 655, 869, 962
Hin6I GCGC 2 cut(s) 579, 789
HinP1I GCGC 2 cut(s) 579, 789
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HinfI GANTC 3 cut(s) 56, 260, 441
Hpy166II GTNNAC 4 cut(s) 214, 274, 310, 400
Hpy188I TCNGA 4 cut(s) 13, 61, 325, 930
Hpy188III TCNNGA 5 cut(s) 359, 634, 782, 860, 959
Hpy8I GTNNAC 4 cut(s) 214, 274, 310, 400
Hpy99I CGWCG 1 cut(s) 230
HpyCH4III ACNGT 3 cut(s) 397, 661, 946
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 5 cut(s) 67, 206, 565, 802, 1006
HpyF10VI GCNNNNNNNGC 2 cut(s) 157, 587
HpyF3I CTNAG 2 cut(s) 107, 671
HpySE526I ACGT 1 cut(s) 195
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 9 cut(s) 71, 135, 151, 308, 542, 565, 655, 869, 962
HspAI GCGC 2 cut(s) 579, 789
Ksp22I TGATCA 1 cut(s) 612
Kzo9I GATC 5 cut(s) 316, 355, 448, 612, 868
Lsp1109I GCAGC 4 cut(s) 394, 662, 665, 711
LweI GCATC 1 cut(s) 472
MaeI CTAG 1 cut(s) 527
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 2 cut(s) 142, 425
MalI GATC 5 cut(s) 318, 357, 450, 614, 870
MboI GATC 5 cut(s) 316, 355, 448, 612, 868
MboII GAAGA 4 cut(s) 26, 346, 374, 476
MflI RGATCY 1 cut(s) 316
MhlI GDGCHC 1 cut(s) 538
MluCI AATT 7 cut(s) 4, 93, 435, 620, 718, 740, 764
MmeI TCCRAC 3 cut(s) 235, 529, 740
MnlI CCTC 5 cut(s) 102, 184, 187, 350, 685
MseI TTAA 2 cut(s) 686, 846
MspA1I CMGCKG 1 cut(s) 1009
Mva1269I GAATGC 2 cut(s) 755, 924
MvnI CGCG 1 cut(s) 581
MwoI GCNNNNNNNGC 2 cut(s) 157, 587
NdeI CATATG 1 cut(s) 476
NdeII GATC 5 cut(s) 316, 355, 448, 612, 868
NlaIII CATG 9 cut(s) 71, 135, 151, 308, 542, 565, 655, 869, 962
NlaIV GGNNCC 1 cut(s) 638
NmuCI GTSAC 1 cut(s) 425
NspI RCATGY 3 cut(s) 135, 542, 565
PaeR7I CTCGAG 1 cut(s) 597
PagI TCATGA 1 cut(s) 958
PciI ACATGT 2 cut(s) 131, 538
PctI GAATGC 2 cut(s) 755, 924
PfeI GAWTC 3 cut(s) 56, 260, 441
PkrI GCNGC 5 cut(s) 409, 677, 680, 726, 1008
PscI ACATGT 2 cut(s) 131, 538
PspN4I GGNNCC 1 cut(s) 638
PspXI VCTCGAGB 1 cut(s) 597
PsrI GAACNNNNNNTAC 2 cut(s) 833, 865
PsuI RGATCY 1 cut(s) 316
PvuII CAGCTG 1 cut(s) 1009
RsaI GTAC 3 cut(s) 311, 421, 454
RsaNI GTAC 3 cut(s) 310, 420, 453
SaqAI TTAA 2 cut(s) 686, 846
SatI GCNGC 5 cut(s) 408, 676, 679, 725, 1007
Sau3AI GATC 5 cut(s) 316, 355, 448, 612, 868
ScaI AGTACT 1 cut(s) 421
SduI GDGCHC 1 cut(s) 538
SfaNI GCATC 1 cut(s) 472
Sfr274I CTCGAG 1 cut(s) 597
SlaI CTCGAG 1 cut(s) 597
SmlI CTYRAG 2 cut(s) 597, 836
SmoI CTYRAG 2 cut(s) 597, 836
Sse9I AATT 7 cut(s) 4, 93, 435, 620, 718, 740, 764
SsiI CCGC 2 cut(s) 41, 581
SspMI CTAG 1 cut(s) 527
TaaI ACNGT 3 cut(s) 397, 661, 946
TaiI ACGT 1 cut(s) 198
TaqI TCGA 2 cut(s) 102, 598
TasI AATT 7 cut(s) 4, 93, 435, 620, 718, 740, 764
TatI WGTACW 2 cut(s) 309, 419
TfiI GAWTC 3 cut(s) 56, 260, 441
Tru1I TTAA 2 cut(s) 686, 846
Tru9I TTAA 2 cut(s) 686, 846
TscAI CASTG 3 cut(s) 43, 622, 664
TseFI GTSAC 1 cut(s) 425
TseI GCWGC 5 cut(s) 407, 675, 678, 724, 1006
Tsp45I GTSAC 1 cut(s) 425
TspDTI ATGAA 6 cut(s) 17, 69, 347, 505, 668, 947
TspGWI ACGGA 1 cut(s) 734
TspRI CASTG 3 cut(s) 43, 622, 664
XapI RAATTY 4 cut(s) 4, 93, 718, 740
XceI RCATGY 3 cut(s) 135, 542, 565
XhoI CTCGAG 1 cut(s) 597
XmiI GTMKAC 2 cut(s) 213, 399
XspI CTAG 1 cut(s) 527
ZraI GACGTC 1 cut(s) 196
ZrmI AGTACT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.