Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0021279

Physical Location & Seq

Genomic Coordinates Forward (+)

39021643 .. 39022769

Gene Structure 1127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00417260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGAAAGTTCCTGTTTCAGTCCTTAACATAACACAGATGTCAGATTACCGAGTTGACGCTCACACAAAAGTTTACACTGAGACTGGAGGCAAACTACAAACAGATGAGCAAAAGGCCGATGTGCTACACAACTCAGATTGTATACATTGGTGTCTGCCAGGAGTTCCGGATACATGGAATCAAATTTTTTTGGCAAATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009250 GO:0009664 GO:0009827 GO:0009987 GO:0010383 GO:0010393 GO:0010410 GO:0012505 GO:0016020 GO:0016043 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042545 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0045491 GO:0045492 GO:0051273 GO:0051274 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

67

Amino Acids

7.59

Weight (kDa)

5.32

Isoelectric Point (pI)

31.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	1 - 65	3e-22	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021279)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g04860
rosa_chinensis	RchiOBHm_Chr3g0462711
rosa_roxburghii	Rroxscaffold_6G00417260
rosa_samantha	Rh3BG120500 Rh4DG328900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	142
AccIII	TCCGGA	1 cut(s)	166
AcsI	RAATTY	2 cut(s)	183, 196
AjnI	CCWGG	1 cut(s)	157
Alw26I	GTCTC	1 cut(s)	74
Aor13HI	TCCGGA	1 cut(s)	166
AoxI	GGCC	1 cut(s)	114
ApoI	RAATTY	2 cut(s)	183, 196
BciT130I	CCWGG	1 cut(s)	159
BciVI	GTATCC	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	74
BfuI	GTATCC	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	159
BmrFI	CCNGG	1 cut(s)	159
BpmI	CTGGAG	1 cut(s)	105
BsaWI	WCCGGW	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	88
BseAI	TCCGGA	1 cut(s)	166
BseBI	CCWGG	1 cut(s)	159
BseMII	CTCAG	2 cut(s)	69, 147
BseNI	ACTGG	1 cut(s)	88
BshFI	GGCC	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	116
Bsp13I	TCCGGA	1 cut(s)	166
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	2 cut(s)	70, 146
BspEI	TCCGGA	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	88
BssNAI	GTATAC	1 cut(s)	143
Bst1107I	GTATAC	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	159
BstDEI	CTNAG	2 cut(s)	78, 133
BstMAI	GTCTC	1 cut(s)	74
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	157
BstZ17I	GTATAC	1 cut(s)	143
BsuI	GTATCC	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	116
BtsIMutI	CAGTG	1 cut(s)	75
CseI	GACGC	1 cut(s)	65
CviAII	CATG	1 cut(s)	174
CviJI	RGCY	1 cut(s)	116
CviKI_1	RGCY	1 cut(s)	116
DdeI	CTNAG	2 cut(s)	78, 133
EcoRII	CCWGG	1 cut(s)	157
FaeI	CATG	1 cut(s)	177
FaiI	YATR	3 cut(s)	29, 143, 175
FatI	CATG	1 cut(s)	173
FblI	GTMKAC	1 cut(s)	142
GsuI	CTGGAG	1 cut(s)	105
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	1 cut(s)	167
HgaI	GACGC	1 cut(s)	65
Hin1II	CATG	1 cut(s)	177
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	1 cut(s)	178
HpaII	CCGG	1 cut(s)	167
Hpy166II	GTNNAC	3 cut(s)	55, 73, 143
Hpy188I	TCNGA	2 cut(s)	43, 136
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	3 cut(s)	55, 73, 143
HpyF3I	CTNAG	2 cut(s)	78, 133
Hsp92II	CATG	1 cut(s)	177
Kpn2I	TCCGGA	1 cut(s)	166
LpnPI	CCDG	5 cut(s)	24, 69, 144, 171, 180
MluCI	AATT	2 cut(s)	183, 196
MnlI	CCTC	1 cut(s)	80
MroI	TCCGGA	1 cut(s)	166
MseI	TTAA	1 cut(s)	24
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
NlaIII	CATG	1 cut(s)	177
PfeI	GAWTC	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	24
ScrFI	CCNGG	1 cut(s)	159
SgeI	CNNG	7 cut(s)	23, 62, 96, 170, 171, 179, 186
Sse9I	AATT	2 cut(s)	183, 196
StyD4I	CCNGG	1 cut(s)	157
TasI	AATT	2 cut(s)	183, 196
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	82
XapI	RAATTY	2 cut(s)	183, 196
XmiI	GTMKAC	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.