Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0021279

Physical Location & Seq

Genomic Coordinates Reverse (-)

9954691 .. 9954996

Gene Structure 306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG120500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAAATGCTTCAATGAAACAAAGCCCTACATGAAAAAGGGATTCTGGAGTACTGGTGCTGATAAGAGGATCATGCGCGTGGTGGTCGGAGTAATAAAGAAAATGAAAGTTCCTGTTTCAGTTCTTAACATAACACAGATGTCAGATTACCGAGTTGACGCTCACACAAAAGTTTACACTGAGACTGGAGGCAAACTACTAACAGATGAGCAAAAGGCCGATGTGCTACACAACTCAGATTGTATACATTGGTGTCTGCCAGGAGTTCCGGATACATGGAATCAAATTTTTTTGGCAAATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009250 GO:0009664 GO:0009827 GO:0009987 GO:0010383 GO:0010393 GO:0010410 GO:0012505 GO:0016020 GO:0016043 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042545 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0045491 GO:0045492 GO:0051273 GO:0051274 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

101

Amino Acids

11.53

Weight (kDa)

9.05

Isoelectric Point (pI)

24.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	2 - 99	9.9e-29	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021279)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g04860
rosa_chinensis	RchiOBHm_Chr3g0462711
rosa_roxburghii	Rroxscaffold_6G00417260
rosa_samantha	Rh3BG120500 Rh4DG328900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	244
AccII	CGCG	1 cut(s)	78
AccIII	TCCGGA	1 cut(s)	268
AclWI	GGATC	1 cut(s)	77
AcsI	RAATTY	2 cut(s)	285, 298
AfaI	GTAC	1 cut(s)	52
AgsI	TTSAA	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	259
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	1 cut(s)	77
Aor13HI	TCCGGA	1 cut(s)	268
AoxI	GGCC	1 cut(s)	216
ApoI	RAATTY	2 cut(s)	285, 298
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	78
BciT130I	CCWGG	1 cut(s)	261
BciVI	GTATCC	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	176
BfuI	GTATCC	1 cut(s)	265
BmcAI	AGTACT	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	261
BmrFI	CCNGG	1 cut(s)	261
BpmI	CTGGAG	2 cut(s)	67, 207
BsaWI	WCCGGW	1 cut(s)	268
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bse1I	ACTGG	2 cut(s)	58, 190
BseAI	TCCGGA	1 cut(s)	268
BseBI	CCWGG	1 cut(s)	261
BseMII	CTCAG	2 cut(s)	171, 249
BseNI	ACTGG	2 cut(s)	58, 190
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	218
BsiSI	CCGG	1 cut(s)	269
BsmAI	GTCTC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	218
Bsp13I	TCCGGA	1 cut(s)	268
Bsp143I	GATC	1 cut(s)	69
BspANI	GGCC	1 cut(s)	218
BspCNI	CTCAG	2 cut(s)	172, 248
BspEI	TCCGGA	1 cut(s)	268
BspFNI	CGCG	1 cut(s)	78
BspPI	GGATC	1 cut(s)	77
BsrI	ACTGG	2 cut(s)	58, 190
BssMI	GATC	1 cut(s)	69
BssNAI	GTATAC	1 cut(s)	245
Bst1107I	GTATAC	1 cut(s)	245
Bst2UI	CCWGG	1 cut(s)	261
BstDEI	CTNAG	2 cut(s)	180, 235
BstFNI	CGCG	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	1 cut(s)	72
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	1 cut(s)	69
BstNI	CCWGG	1 cut(s)	261
BstSCI	CCNGG	1 cut(s)	259
BstUI	CGCG	1 cut(s)	78
BstZ17I	GTATAC	1 cut(s)	245
BsuI	GTATCC	1 cut(s)	265
BsuRI	GGCC	1 cut(s)	218
BtsIMutI	CAGTG	1 cut(s)	177
CfoI	GCGC	1 cut(s)	78
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	51
CviAII	CATG	3 cut(s)	31, 73, 276
CviJI	RGCY	2 cut(s)	25, 218
CviKI_1	RGCY	2 cut(s)	25, 218
CviQI	GTAC	1 cut(s)	51
DdeI	CTNAG	2 cut(s)	180, 235
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	259
FaeI	CATG	3 cut(s)	34, 76, 279
FaiI	YATR	5 cut(s)	32, 74, 131, 245, 277
FatI	CATG	3 cut(s)	30, 72, 275
FblI	GTMKAC	1 cut(s)	244
GlaI	GCGC	1 cut(s)	77
GsuI	CTGGAG	2 cut(s)	67, 207
HaeIII	GGCC	1 cut(s)	218
HapII	CCGG	1 cut(s)	269
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	3 cut(s)	34, 76, 279
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	2 cut(s)	42, 280
HpaII	CCGG	1 cut(s)	269
Hpy166II	GTNNAC	3 cut(s)	157, 175, 245
Hpy188I	TCNGA	3 cut(s)	89, 145, 238
Hpy188III	TCNNGA	2 cut(s)	46, 269
Hpy8I	GTNNAC	3 cut(s)	157, 175, 245
HpyF3I	CTNAG	2 cut(s)	180, 235
Hsp92II	CATG	3 cut(s)	34, 76, 279
HspAI	GCGC	1 cut(s)	76
Kpn2I	TCCGGA	1 cut(s)	268
Kzo9I	GATC	1 cut(s)	69
LpnPI	CCDG	7 cut(s)	31, 39, 126, 171, 246, 273, 282
MalI	GATC	1 cut(s)	71
MboI	GATC	1 cut(s)	69
MluCI	AATT	2 cut(s)	285, 298
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	2 cut(s)	60, 182
MroI	TCCGGA	1 cut(s)	268
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	1 cut(s)	77
MspI	CCGG	1 cut(s)	269
MspR9I	CCNGG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	261
MvnI	CGCG	1 cut(s)	78
NdeII	GATC	1 cut(s)	69
NlaIII	CATG	3 cut(s)	34, 76, 279
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	42, 280
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
RseI	CAYNNNNRTG	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	126
Sau3AI	GATC	1 cut(s)	69
ScaI	AGTACT	1 cut(s)	52
ScrFI	CCNGG	1 cut(s)	261
SmiMI	CAYNNNNRTG	1 cut(s)	77
Sse9I	AATT	2 cut(s)	285, 298
StyD4I	CCNGG	1 cut(s)	259
TasI	AATT	2 cut(s)	285, 298
TatI	WGTACW	1 cut(s)	50
TfiI	GAWTC	2 cut(s)	42, 280
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	184
TspDTI	ATGAA	4 cut(s)	17, 30, 47, 119
TspRI	CASTG	1 cut(s)	184
XapI	RAATTY	2 cut(s)	285, 298
XmiI	GTMKAC	1 cut(s)	244
XmnI	GAANNNNTTC	1 cut(s)	8
ZrmI	AGTACT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.