TENA/THI-4/PQQC family
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g20480 |
| malus_domestica | MD05G1188600.v1.1 |
| prunus_persica | Prupe.8G215100_v2.0.a1 Prupe.8G215100_v2.0.a1 |
| pyrus_communis | pycom05g17320 |
| rosa_chinensis | RchiOBHm_Chr6g0286581 |
| rosa_laevigata | RLG00000012546 |
| rosa_multiflora | Rmu_sc0000560.1_g000002 |
| rosa_roxburghii | Rroxscaffold_7G00182170 |
| rosa_rugosa | Rorug06G0181200 |
| rosa_samantha | Rh6AG294100 Rh6BG297200 Rh6CG297600 Rh6DG289500 |
| rosa_wichuraiana | Rw6G025310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 56 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1631 |
| AccI | GTMKAC | 1 cut(s) | 1643 |
| AccII | CGCG | 2 cut(s) | 228, 243 |
| AccIII | TCCGGA | 1 cut(s) | 249 |
| AciI | CCGC | 4 cut(s) | 99, 124, 185, 1043 |
| AclWI | GGATC | 4 cut(s) | 44, 503, 516, 1453 |
| AcoI | YGGCCR | 1 cut(s) | 1126 |
| AcuI | CTGAAG | 3 cut(s) | 885, 1127, 1242 |
| AfaI | GTAC | 4 cut(s) | 176, 852, 1212, 1284 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 286, 307, 308, 1617, 1631 |
| AjnI | CCWGG | 1 cut(s) | 1128 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 372, 404 |
| AluBI | AGCT | 8 cut(s) | 581, 637, 668, 1161, 1250, 1363, 1370, 1656 |
| AluI | AGCT | 8 cut(s) | 581, 637, 668, 1161, 1250, 1363, 1370, 1656 |
| Alw21I | GWGCWC | 1 cut(s) | 920 |
| Alw26I | GTCTC | 8 cut(s) | 460, 622, 744, 1048, 1353, 1513, 1576, 1654 |
| AlwI | GGATC | 4 cut(s) | 44, 503, 516, 1453 |
| Ama87I | CYCGRG | 1 cut(s) | 741 |
| Aor13HI | TCCGGA | 1 cut(s) | 249 |
| AoxI | GGCC | 6 cut(s) | 16, 88, 216, 1126, 1391, 1659 |
| ApaI | GGGCCC | 1 cut(s) | 1395 |
| ApeKI | GCWGC | 5 cut(s) | 326, 431, 446, 706, 1592 |
| AseI | ATTAAT | 1 cut(s) | 696 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1362 |
| AspLEI | GCGC | 3 cut(s) | 197, 230, 243 |
| AspS9I | GGNCC | 4 cut(s) | 142, 1391, 1392, 1659 |
| AsuC2I | CCSGG | 1 cut(s) | 393 |
| AsuHPI | GGTGA | 3 cut(s) | 1466, 1538, 1582 |
| AvaI | CYCGRG | 1 cut(s) | 741 |
| AvaII | GGWCC | 1 cut(s) | 142 |
| AxyI | CCTNAGG | 1 cut(s) | 1514 |
| BaeGI | GKGCMC | 2 cut(s) | 1030, 1395 |
| BalI | TGGCCA | 1 cut(s) | 1128 |
| BamHI | GGATCC | 1 cut(s) | 508 |
| BanII | GRGCYC | 1 cut(s) | 1395 |
| BbsI | GAAGAC | 3 cut(s) | 52, 891, 1416 |
| Bbv12I | GWGCWC | 1 cut(s) | 920 |
| BbvI | GCAGC | 5 cut(s) | 338, 418, 433, 693, 1579 |
| BccI | CCATC | 4 cut(s) | 774, 848, 983, 1142 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 790, 800, 824, 834, 1652, 1686 |
| BciT130I | CCWGG | 1 cut(s) | 1130 |
| BclI | TGATCA | 1 cut(s) | 1528 |
| BcnI | CCSGG | 1 cut(s) | 393 |
| BcoDI | GTCTC | 8 cut(s) | 460, 622, 744, 1048, 1353, 1513, 1576, 1654 |
| BfaI | CTAG | 4 cut(s) | 602, 1106, 1523, 1653 |
| BfmI | CTRYAG | 1 cut(s) | 1396 |
| BglII | AGATCT | 2 cut(s) | 1015, 1264 |
| BisI | GCNGC | 5 cut(s) | 327, 432, 447, 707, 1593 |
| BlsI | GCNGC | 5 cut(s) | 328, 433, 448, 708, 1594 |
| Bme1390I | CCNGG | 2 cut(s) | 393, 1130 |
| Bme18I | GGWCC | 1 cut(s) | 142 |
| BmeT110I | CYCGRG | 1 cut(s) | 741 |
| BmgT120I | GGNCC | 4 cut(s) | 142, 1391, 1392, 1659 |
| BmiI | GGNNCC | 5 cut(s) | 456, 510, 1392, 1393, 1609 |
| BmrFI | CCNGG | 2 cut(s) | 393, 1130 |
| BmrI | ACTGGG | 1 cut(s) | 1332 |
| BmsI | GCATC | 4 cut(s) | 313, 371, 588, 1389 |
| BmuI | ACTGGG | 1 cut(s) | 1332 |
| BpiI | GAAGAC | 3 cut(s) | 52, 891, 1416 |
| BpmI | CTGGAG | 1 cut(s) | 648 |
| Bpu10I | CCTNAGC | 1 cut(s) | 138 |
| BpuEI | CTTGAG | 4 cut(s) | 153, 659, 1297, 1486 |
| BpuMI | CCSGG | 1 cut(s) | 393 |
| BsaBI | GATNNNNATC | 1 cut(s) | 839 |
| BsaWI | WCCGGW | 2 cut(s) | 249, 891 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 372, 402, 1434, 1464, 1510, 1540 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 286, 307, 308, 1617, 1631 |
| Bse118I | RCCGGY | 1 cut(s) | 218 |
| Bse1I | ACTGG | 2 cut(s) | 631, 1327 |
| Bse21I | CCTNAGG | 1 cut(s) | 1514 |
| Bse3DI | GCAATG | 2 cut(s) | 493, 1207 |
| Bse8I | GATNNNNATC | 1 cut(s) | 839 |
| BseAI | TCCGGA | 1 cut(s) | 249 |
| BseBI | CCWGG | 1 cut(s) | 1130 |
| BseGI | GGATG | 2 cut(s) | 1153, 1380 |
| BseJI | GATNNNNATC | 1 cut(s) | 839 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 286, 307, 308, 1617, 1631 |
| BseMI | GCAATG | 2 cut(s) | 493, 1207 |
| BseMII | CTCAG | 2 cut(s) | 152, 731 |
| BseNI | ACTGG | 2 cut(s) | 631, 1327 |
| BseRI | GAGGAG | 1 cut(s) | 647 |
| BseSI | GKGCMC | 2 cut(s) | 1030, 1395 |
| BseXI | GCAGC | 5 cut(s) | 338, 418, 433, 693, 1579 |
| BseYI | CCCAGC | 1 cut(s) | 1656 |
| Bsh1236I | CGCG | 2 cut(s) | 228, 243 |
| BshFI | GGCC | 6 cut(s) | 18, 90, 218, 1128, 1393, 1661 |
| BsiHKAI | GWGCWC | 1 cut(s) | 920 |
| BsiHKCI | CYCGRG | 1 cut(s) | 741 |
| BsiSI | CCGG | 4 cut(s) | 219, 250, 392, 892 |
| BsiWI | CGTACG | 1 cut(s) | 174 |
| BslFI | GGGAC | 3 cut(s) | 284, 716, 1535 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 286, 307, 308, 1617, 1631 |
| BsmAI | GTCTC | 8 cut(s) | 460, 622, 744, 1048, 1353, 1513, 1576, 1654 |
| BsmFI | GGGAC | 3 cut(s) | 284, 716, 1535 |
| BsmI | GAATGC | 1 cut(s) | 1673 |
| BsnI | GGCC | 6 cut(s) | 18, 90, 218, 1128, 1393, 1661 |
| BsoBI | CYCGRG | 1 cut(s) | 741 |
| Bsp120I | GGGCCC | 1 cut(s) | 1391 |
| Bsp1286I | GDGCHC | 3 cut(s) | 920, 1030, 1395 |
| Bsp13I | TCCGGA | 1 cut(s) | 249 |
| Bsp1407I | TGTACA | 1 cut(s) | 1282 |
| Bsp143I | GATC | 6 cut(s) | 36, 508, 1015, 1264, 1445, 1528 |
| BspACI | CCGC | 4 cut(s) | 99, 124, 185, 1043 |
| BspANI | GGCC | 6 cut(s) | 18, 90, 218, 1128, 1393, 1661 |
| BspCNI | CTCAG | 2 cut(s) | 151, 730 |
| BspEI | TCCGGA | 1 cut(s) | 249 |
| BspFNI | CGCG | 2 cut(s) | 228, 243 |
| BspLI | GGNNCC | 5 cut(s) | 456, 510, 1392, 1393, 1609 |
| BspMAI | CTGCAG | 1 cut(s) | 1400 |
| BspPI | GGATC | 4 cut(s) | 44, 503, 516, 1453 |
| BsrDI | GCAATG | 2 cut(s) | 493, 1207 |
| BsrFI | RCCGGY | 1 cut(s) | 218 |
| BsrGI | TGTACA | 1 cut(s) | 1282 |
| BsrI | ACTGG | 2 cut(s) | 631, 1327 |
| BssAI | RCCGGY | 1 cut(s) | 218 |
| BssMI | GATC | 6 cut(s) | 36, 508, 1015, 1264, 1445, 1528 |
| BssNAI | GTATAC | 1 cut(s) | 1644 |
| Bst1107I | GTATAC | 1 cut(s) | 1644 |
| Bst2UI | CCWGG | 1 cut(s) | 1130 |
| Bst4CI | ACNGT | 5 cut(s) | 551, 850, 1432, 1629, 1648 |
| Bst6I | CTCTTC | 4 cut(s) | 379, 588, 945, 1568 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 836 |
| BstAUI | TGTACA | 1 cut(s) | 1282 |
| BstC8I | GCNNGC | 5 cut(s) | 16, 220, 354, 799, 1126 |
| BstDEI | CTNAG | 4 cut(s) | 138, 611, 717, 1514 |
| BstEII | GGTNACC | 1 cut(s) | 1315 |
| BstF5I | GGATG | 2 cut(s) | 1153, 1380 |
| BstFNI | CGCG | 2 cut(s) | 228, 243 |
| BstHHI | GCGC | 3 cut(s) | 197, 230, 243 |
| BstKTI | GATC | 6 cut(s) | 39, 511, 1018, 1267, 1448, 1531 |
| BstMAI | GTCTC | 8 cut(s) | 460, 622, 744, 1048, 1353, 1513, 1576, 1654 |
| BstMBI | GATC | 6 cut(s) | 36, 508, 1015, 1264, 1445, 1528 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 20, 262, 452, 827, 836, 1130 |
| BstNI | CCWGG | 1 cut(s) | 1130 |
| BstNSI | RCATGY | 2 cut(s) | 801, 1673 |
| BstPI | GGTNACC | 1 cut(s) | 1315 |
| BstSCI | CCNGG | 2 cut(s) | 391, 1128 |
| BstSFI | CTRYAG | 1 cut(s) | 1396 |
| BstSLI | GKGCMC | 2 cut(s) | 1030, 1395 |
| BstUI | CGCG | 2 cut(s) | 228, 243 |
| BstV1I | GCAGC | 5 cut(s) | 338, 418, 433, 693, 1579 |
| BstV2I | GAAGAC | 3 cut(s) | 52, 891, 1416 |
| BstX2I | RGATCY | 3 cut(s) | 508, 1015, 1264 |
| BstYI | RGATCY | 3 cut(s) | 508, 1015, 1264 |
| BstZ17I | GTATAC | 1 cut(s) | 1644 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1514 |
| BsuRI | GGCC | 6 cut(s) | 18, 90, 218, 1128, 1393, 1661 |
| BtsCI | GGATG | 2 cut(s) | 1153, 1380 |
| BtsI | GCAGTG | 2 cut(s) | 1030, 1731 |
| BtsIMutI | CAGTG | 4 cut(s) | 1030, 1320, 1625, 1731 |
| Cac8I | GCNNGC | 5 cut(s) | 16, 220, 354, 799, 1126 |
| CfoI | GCGC | 3 cut(s) | 197, 230, 243 |
| Cfr10I | RCCGGY | 1 cut(s) | 218 |
| Cfr13I | GGNCC | 4 cut(s) | 142, 1391, 1392, 1659 |
| Csp6I | GTAC | 4 cut(s) | 175, 851, 1211, 1283 |
| CviAII | CATG | 7 cut(s) | 749, 798, 921, 1208, 1509, 1670, 1737 |
| CviQI | GTAC | 4 cut(s) | 175, 851, 1211, 1283 |
| DdeI | CTNAG | 4 cut(s) | 138, 611, 717, 1514 |
| DpnI | GATC | 6 cut(s) | 38, 510, 1017, 1266, 1447, 1530 |
| DpnII | GATC | 6 cut(s) | 36, 508, 1015, 1264, 1445, 1528 |
| DraI | TTTAAA | 1 cut(s) | 1101 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 56 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 56 |
| EaeI | YGGCCR | 1 cut(s) | 1126 |
| Eam1104I | CTCTTC | 4 cut(s) | 379, 588, 945, 1568 |
| EarI | CTCTTC | 4 cut(s) | 379, 588, 945, 1568 |
| EciI | GGCGGA | 3 cut(s) | 88, 113, 200 |
| Eco147I | AGGCCT | 1 cut(s) | 18 |
| Eco24I | GRGCYC | 1 cut(s) | 1395 |
| Eco47I | GGWCC | 1 cut(s) | 142 |
| Eco57I | CTGAAG | 3 cut(s) | 885, 1127, 1242 |
| Eco81I | CCTNAGG | 1 cut(s) | 1514 |
| Eco88I | CYCGRG | 1 cut(s) | 741 |
| Eco91I | GGTNACC | 1 cut(s) | 1315 |
| EcoO109I | RGGNCCY | 3 cut(s) | 142, 1391, 1392 |
| EcoO65I | GGTNACC | 1 cut(s) | 1315 |
| EcoRII | CCWGG | 1 cut(s) | 1128 |
| EcoT22I | ATGCAT | 2 cut(s) | 478, 1675 |
| EcoT38I | GRGCYC | 1 cut(s) | 1395 |
| FaeI | CATG | 7 cut(s) | 752, 801, 924, 1211, 1512, 1673, 1740 |
| FaqI | GGGAC | 3 cut(s) | 284, 716, 1535 |
| FatI | CATG | 7 cut(s) | 748, 797, 920, 1207, 1508, 1669, 1736 |
| FbaI | TGATCA | 1 cut(s) | 1528 |
| FblI | GTMKAC | 1 cut(s) | 1643 |
| Fnu4HI | GCNGC | 5 cut(s) | 327, 432, 447, 707, 1593 |
| FokI | GGATG | 2 cut(s) | 1160, 1367 |
| FriOI | GRGCYC | 1 cut(s) | 1395 |
| Fsp4HI | GCNGC | 5 cut(s) | 327, 432, 447, 707, 1593 |
| FspBI | CTAG | 4 cut(s) | 602, 1106, 1523, 1653 |
| GlaI | GCGC | 3 cut(s) | 196, 229, 242 |
| GluI | GCNGC | 5 cut(s) | 327, 432, 447, 707, 1593 |
| GsaI | CCCAGC | 1 cut(s) | 1660 |
| GsuI | CTGGAG | 1 cut(s) | 648 |
| HaeIII | GGCC | 6 cut(s) | 18, 90, 218, 1128, 1393, 1661 |
| HapII | CCGG | 4 cut(s) | 219, 250, 392, 892 |
| HhaI | GCGC | 3 cut(s) | 197, 230, 243 |
| Hin1II | CATG | 7 cut(s) | 752, 801, 924, 1211, 1512, 1673, 1740 |
| Hin6I | GCGC | 3 cut(s) | 195, 228, 241 |
| HinP1I | GCGC | 3 cut(s) | 195, 228, 241 |
| HincII | GTYRAC | 1 cut(s) | 1689 |
| HindII | GTYRAC | 1 cut(s) | 1689 |
| HindIII | AAGCTT | 3 cut(s) | 1159, 1361, 1368 |
| HinfI | GANTC | 8 cut(s) | 110, 468, 493, 812, 872, 1002, 1310, 1346 |
| HpaII | CCGG | 4 cut(s) | 219, 250, 392, 892 |
| HphI | GGTGA | 3 cut(s) | 1466, 1538, 1582 |
| Hpy166II | GTNNAC | 6 cut(s) | 7, 1283, 1285, 1435, 1644, 1689 |
| Hpy188I | TCNGA | 5 cut(s) | 281, 720, 845, 877, 1170 |
| Hpy8I | GTNNAC | 6 cut(s) | 7, 1283, 1285, 1435, 1644, 1689 |
| Hpy99I | CGWCG | 7 cut(s) | 30, 89, 137, 203, 206, 209, 212 |
| HpyAV | CCTTC | 6 cut(s) | 88, 130, 371, 992, 1481, 1598 |
| HpyCH4III | ACNGT | 5 cut(s) | 551, 850, 1432, 1629, 1648 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 20, 262, 452, 827, 836, 1130 |
| HpyF3I | CTNAG | 4 cut(s) | 138, 611, 717, 1514 |
| Hsp92II | CATG | 7 cut(s) | 752, 801, 924, 1211, 1512, 1673, 1740 |
| HspAI | GCGC | 3 cut(s) | 195, 228, 241 |
| Kpn2I | TCCGGA | 1 cut(s) | 249 |
| KroI | GCCGGC | 1 cut(s) | 218 |
| KroNI | GCCGGC | 1 cut(s) | 220 |
| Ksp22I | TGATCA | 1 cut(s) | 1528 |
| Kzo9I | GATC | 6 cut(s) | 36, 508, 1015, 1264, 1445, 1528 |
| LmnI | GCTCC | 2 cut(s) | 460, 634 |
| Lsp1109I | GCAGC | 5 cut(s) | 338, 418, 433, 693, 1579 |
| LweI | GCATC | 4 cut(s) | 313, 371, 588, 1389 |
| MaeI | CTAG | 4 cut(s) | 602, 1106, 1523, 1653 |
| MaeIII | GTNAC | 5 cut(s) | 524, 979, 1232, 1315, 1454 |
| MalI | GATC | 6 cut(s) | 38, 510, 1017, 1266, 1447, 1530 |
| MboI | GATC | 6 cut(s) | 36, 508, 1015, 1264, 1445, 1528 |
| MfeI | CAATTG | 2 cut(s) | 260, 1424 |
| MflI | RGATCY | 3 cut(s) | 508, 1015, 1264 |
| MhlI | GDGCHC | 3 cut(s) | 920, 1030, 1395 |
| MlsI | TGGCCA | 1 cut(s) | 1128 |
| MluCI | AATT | 9 cut(s) | 179, 260, 291, 399, 711, 1295, 1329, 1340, 1424 |
| MluNI | TGGCCA | 1 cut(s) | 1128 |
| MlyI | GAGTC | 3 cut(s) | 104, 462, 1355 |
| Mox20I | TGGCCA | 1 cut(s) | 1128 |
| Mph1103I | ATGCAT | 2 cut(s) | 478, 1675 |
| MroI | TCCGGA | 1 cut(s) | 249 |
| MroNI | GCCGGC | 1 cut(s) | 218 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1362 |
| MscI | TGGCCA | 1 cut(s) | 1128 |
| MseI | TTAA | 5 cut(s) | 696, 911, 1100, 1194, 1335 |
| Msp20I | TGGCCA | 1 cut(s) | 1128 |
| MspI | CCGG | 4 cut(s) | 219, 250, 392, 892 |
| MspR9I | CCNGG | 2 cut(s) | 393, 1130 |
| MunI | CAATTG | 2 cut(s) | 260, 1424 |
| Mva1269I | GAATGC | 1 cut(s) | 1673 |
| MvaI | CCWGG | 1 cut(s) | 1130 |
| MvnI | CGCG | 2 cut(s) | 228, 243 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 20, 262, 452, 827, 836, 1130 |
| NaeI | GCCGGC | 1 cut(s) | 220 |
| NciI | CCSGG | 1 cut(s) | 393 |
| NdeII | GATC | 6 cut(s) | 36, 508, 1015, 1264, 1445, 1528 |
| NgoMIV | GCCGGC | 1 cut(s) | 218 |
| NlaIII | CATG | 7 cut(s) | 752, 801, 924, 1211, 1512, 1673, 1740 |
| NlaIV | GGNNCC | 5 cut(s) | 456, 510, 1392, 1393, 1609 |
| NmuCI | GTSAC | 4 cut(s) | 524, 979, 1232, 1454 |
| NsiI | ATGCAT | 2 cut(s) | 478, 1675 |
| NspI | RCATGY | 2 cut(s) | 801, 1673 |
| PaeI | GCATGC | 1 cut(s) | 801 |
| PceI | AGGCCT | 1 cut(s) | 18 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 207, 984 |
| PctI | GAATGC | 1 cut(s) | 1673 |
| PdiI | GCCGGC | 1 cut(s) | 220 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1362 |
| PfeI | GAWTC | 5 cut(s) | 493, 812, 872, 1002, 1310 |
| Pfl23II | CGTACG | 1 cut(s) | 174 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1631 |
| PkrI | GCNGC | 5 cut(s) | 328, 433, 448, 708, 1594 |
| PleI | GAGTC | 3 cut(s) | 104, 462, 1354 |
| PpsI | GAGTC | 3 cut(s) | 104, 462, 1354 |
| PpuMI | RGGWCCY | 1 cut(s) | 142 |
| PshBI | ATTAAT | 1 cut(s) | 696 |
| Psp5II | RGGWCCY | 1 cut(s) | 142 |
| Psp6I | CCWGG | 1 cut(s) | 1128 |
| PspEI | GGTNACC | 1 cut(s) | 1315 |
| PspFI | CCCAGC | 1 cut(s) | 1656 |
| PspGI | CCWGG | 1 cut(s) | 1128 |
| PspLI | CGTACG | 1 cut(s) | 174 |
| PspN4I | GGNNCC | 5 cut(s) | 456, 510, 1392, 1393, 1609 |
| PspOMI | GGGCCC | 1 cut(s) | 1391 |
| PspPI | GGNCC | 4 cut(s) | 142, 1391, 1392, 1659 |
| PspPPI | RGGWCCY | 1 cut(s) | 142 |
| PstI | CTGCAG | 1 cut(s) | 1400 |
| PsuI | RGATCY | 3 cut(s) | 508, 1015, 1264 |
| RsaI | GTAC | 4 cut(s) | 176, 852, 1212, 1284 |
| RsaNI | GTAC | 4 cut(s) | 175, 851, 1211, 1283 |
| SaqAI | TTAA | 5 cut(s) | 696, 911, 1100, 1194, 1335 |
| SatI | GCNGC | 5 cut(s) | 327, 432, 447, 707, 1593 |
| Sau3AI | GATC | 6 cut(s) | 36, 508, 1015, 1264, 1445, 1528 |
| Sau96I | GGNCC | 4 cut(s) | 142, 1391, 1392, 1659 |
| SbfI | CCTGCAGG | 1 cut(s) | 1400 |
| SchI | GAGTC | 3 cut(s) | 104, 462, 1355 |
| ScrFI | CCNGG | 2 cut(s) | 393, 1130 |
| SdaI | CCTGCAGG | 1 cut(s) | 1400 |
| SduI | GDGCHC | 3 cut(s) | 920, 1030, 1395 |
| SfaNI | GCATC | 4 cut(s) | 313, 371, 588, 1389 |
| SfcI | CTRYAG | 1 cut(s) | 1396 |
| SinI | GGWCC | 1 cut(s) | 142 |
| SmlI | CTYRAG | 4 cut(s) | 168, 638, 1276, 1501 |
| SmoI | CTYRAG | 4 cut(s) | 168, 638, 1276, 1501 |
| SphI | GCATGC | 1 cut(s) | 801 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1400 |
| Sse9I | AATT | 9 cut(s) | 179, 260, 291, 399, 711, 1295, 1329, 1340, 1424 |
| SseBI | AGGCCT | 1 cut(s) | 18 |
| SsiI | CCGC | 4 cut(s) | 99, 124, 185, 1043 |
| SspMI | CTAG | 4 cut(s) | 602, 1106, 1523, 1653 |
| StuI | AGGCCT | 1 cut(s) | 18 |
| StyD4I | CCNGG | 2 cut(s) | 391, 1128 |
| TaaI | ACNGT | 5 cut(s) | 551, 850, 1432, 1629, 1648 |
| TaqI | TCGA | 2 cut(s) | 108, 810 |
| TasI | AATT | 9 cut(s) | 179, 260, 291, 399, 711, 1295, 1329, 1340, 1424 |
| TatI | WGTACW | 2 cut(s) | 1210, 1282 |
| TfiI | GAWTC | 5 cut(s) | 493, 812, 872, 1002, 1310 |
| Tru1I | TTAA | 5 cut(s) | 696, 911, 1100, 1194, 1335 |
| Tru9I | TTAA | 5 cut(s) | 696, 911, 1100, 1194, 1335 |
| TscAI | CASTG | 4 cut(s) | 1030, 1327, 1632, 1738 |
| TseFI | GTSAC | 4 cut(s) | 524, 979, 1232, 1454 |
| TseI | GCWGC | 5 cut(s) | 326, 431, 446, 706, 1592 |
| Tsp45I | GTSAC | 4 cut(s) | 524, 979, 1232, 1454 |
| TspGWI | ACGGA | 1 cut(s) | 46 |
| TspRI | CASTG | 4 cut(s) | 1030, 1327, 1632, 1738 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1631 |
| VpaK11BI | GGWCC | 1 cut(s) | 142 |
| VspI | ATTAAT | 1 cut(s) | 696 |
| XbaI | TCTAGA | 1 cut(s) | 1105 |
| XceI | RCATGY | 2 cut(s) | 801, 1673 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 991 |
| XmiI | GTMKAC | 1 cut(s) | 1643 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1362 |
| XspI | CTAG | 4 cut(s) | 602, 1106, 1523, 1653 |
| Zsp2I | ATGCAT | 2 cut(s) | 478, 1675 |