Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009596

Physical Location & Seq

Genomic Coordinates Reverse (-)

23630148 .. 23633814

Gene Structure 3667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00184430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2520 bp

ATGATCTTTAAACGGCCTCAGGGATATGAAGCTACACTATCACTTGGAATCCAGTTATGGACCGAAGCTTCCAATAACCTGAGCTCCTTCCTGTACACTAACACTCGTTACTCTTTTCAAGCCTGTGTTTCCTACCTTAAGTTGTCAGTTTCATCTTTGCCACCCAGAGAGAGGCAGTCAGAGTCAGAGATGGGGCTAGAAATTATGGAGCCAAATACTTGCATTAGAGGTTGCTGCCACAGCAATTCCATTCCTCTACATCTTCCATCTTCCTCTTACACTATCCTCAAACCTATTGCTAGAGGGGCAGAGAGTGTTGTATATGAAGCAGTTTTGGATGGAAAGAAAGTTGCTGCAAAGAAACCCATCTTGTCTACTTCTGAAGACATTGATAAGTTCCACAAGGAGTTGCAATTGTTATGTAAATTGCATCATCCCGGATTGGCAAAACTGGTAGCTGCACATGCAAAGCCACCCAACTACATGTATTTCTTTGAATATTTTGAACCTCCCAATTTATCTGAGAAATTACACTTGGAAGAATGGAGTCCGAGTATCAATCAGGTGCTCATGATTGCTGTCCATTTAGCATCGGCTTTGCAATATCTGCATAACCTTGGGATTGTGCATAGGGATGTGAAACCGGCAAATATTCTTCTTGACAAAGATCTTTGTCCACACTTATCAGACTTTGGTTTGGCGGAATACAAGGAAGATCTTAAAGGAGTTTCTGCTGAAAACTGGAAGTCATTGGGCAAGCCTACTGGTGGTTTTCACAAAAGAAATATGGTTGGCACCCTATTGTATATGGCACCTGAGTTACTAAAGAAGGAATTACATACAGAAAAATCAGATGTTTACAGTTTTGGTATAGCAATCAATGAGCTTCTTACTGGTGTTGTTCCATATACTGATCTTCGTGCAGAAGCGCAGGCACACACTGTGCTAGAGATGAACTACACCGAGCAGAAACTTACAGCAGCTGTGGTGTCTGATGGTTTGCGACCGGTTCTTGCTGGTCCTGAGTCTGGTGTACCATCAACTTTAATATCACTGATAGAGAGGTGTTGGGATGCAACTTCTCAAAACAGACCTTCGTTTGATGCCATAGTTGCAGAACTTGGTACAATTTTGGAACATAGAAAGAGAATAAAGGAACCTGCTATTGCCGATGGCGAAGCTCATAATTCTGTTGGTGATCAGCACGCAGATGCTGCAAACAACTATCATGTTTATCAAGAAGGTGTTGATTGGTATAGCCGGGCAGAAAAATTCACCAAAGAGCTCATGAAACTAAATCTGACCATGGAGGATACACATTTCCTGTTGCCCCATATGGATAATGAAGAGGATATCCATTTTTTTGGAATTTTTGATGGTCATAGAGGTGCAGCCGCTGCCGAATTTTCTGCTCGAGCTTTGCCAAGATTCTTGCAAGCTGTAAGTTCTATTAGCAGTCCAACTGATGCTTTAGTGGAAGCATTCATCAAGACAGATGTTGCATTTAGAGATGAACTTGATTTTTGTCGTAAATCCAAGAGAGTCATCCAGAAGGATTGGCATCCTGGTTGCACTGCAGCTGCTGCTCTTATTGTTAAAAACAAGCTTTTTGTAGCCAATGCTGGTGATTGCAGGACGATATTGTGTCGGGCTGGCATCCCTGTTCTCCTAAGCAAGGATCACGTTGCAAGCTGTCTTGAGGAGAGAGAGCGGGTTATTAATGCAGGAGGACAAGTAAAATGGCAAGTCGATGATTGGCGGGTTGGCCTAGCTGCTCTTCAGGTCACTCGTTCCATAGGTGATGATGATCTAAAGCCTGCTGTAACTGCAGAACCTGAGATAAGTGAGACTATTCTATCTGCAGAAGATGAGTATTTGGTTATGGCAAGTGATGGACTGTGGGATGTCATGAGCAATGCAGAGGTTATAAGCATTATCAAGGACACTGTGAAAGAGCCTGGAATGTGCTCTAAGCGATTGGCAACAGAAGCTGCCGAGCGTGGCAGCAAAGACAACATAACAGTCATTGTTGTCTTCCTTCGTCTTGAGTTTTGGAATGATGCTGGTTGGGATTTGGTTATGCTTCAGGCTTGTGTACCTGTATTTCCGAGGAGACTTCAGTTCACTTTGTGTGATTGTTCAAAGAATGGCAGATACTTTTTATTTAGCTTGGGAAGGTTGCTGCTGATATTAAGCAAGGATGCCGCAAAGTTCAATGTCTGCAGTGGAGTATTCTCTTCATTTTGTGTTGCTGTTTATTTGGAAATGGAGTGTAAACCTAGCTCTGGGAATTTTAAGCTTAATGGTGGCACTGGATCCTCTAATGGTCTGGTTGGTGCTGGCGTGTCATCAGAGACGATTCTGGAGGTCGGATTAATGCAGAACATTGGCAGAGGGGAGGTGGAAACTGATTCTGCGGTCTTGCTTAACCTGGTTCAGACTGAGGATGTGGACTTTCACCTTCTTGTTTATGATCTTCGATATATGGCAAAGGGTGTCGGCTACTTTTTCCGCCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C Pkinase

Protein Analysis

839

Amino Acids

93.04

Weight (kDa)

5.64

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	93 - 372	1e-41	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	95 - 374	1e-37	Protein tyrosine and serine/threonine kinase
PP2C	PF00481	434 - 673	2.2e-65	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40860 AT2G40860 AT2G40860 AT2G40860
fragaria_vesca	FvH4_2g18940
malus_domestica	MD12G1099600.v1.1 MD14G1093400.v1.1
prunus_persica	Prupe.7G035700_v2.0.a1 Prupe.7G035700_v2.0.a1
pyrus_communis	pycom12g09410
rosa_chinensis	RchiOBHm_Chr6g0284731
rosa_laevigata	RLG00000012723
rosa_multiflora	Rmu_sc0008596.1_g000004 Rmu_sc0022173.1_g000003
rosa_roxburghii	Rroxscaffold_7G00184430
rosa_rugosa	Rorug06G0166000 Rorug06G0166100
rosa_samantha	Rh6AG279100 Rh6BG279200 Rh6CG281400 Rh6DG274100
rosa_wichuraiana	Rw6G023990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1928
Acc36I	ACCTGC	1 cut(s)	1168
AccB1I	GGYRCC	2 cut(s)	794, 811
AccBSI	CCGCTC	1 cut(s)	1711
AccI	GTMKAC	1 cut(s)	374
AciI	CCGC	7 cut(s)	701, 1395, 1711, 1759, 2205, 2417, 2512
AclWI	GGATC	3 cut(s)	1686, 2310, 2323
AcsI	RAATTY	4 cut(s)	1271, 1368, 1403, 2290
AcuI	CTGAAG	4 cut(s)	402, 1763, 2069, 2102
AdeI	CACNNNGTG	2 cut(s)	943, 2130
AfaI	GTAC	4 cut(s)	95, 1035, 1126, 2097
AfiI	CCNNNNNNNGG	5 cut(s)	171, 767, 1028, 1675, 2285
AflII	CTTAAG	1 cut(s)	137
AflIII	ACRYGT	1 cut(s)	483
AgeI	ACCGGT	1 cut(s)	1006
AgsI	TTSAA	5 cut(s)	119, 497, 506, 2142, 2215
AjnI	CCWGG	3 cut(s)	1564, 1957, 2430
AjuI	GAANNNNNNNTTGG	2 cut(s)	518, 550
Alw21I	GWGCWC	4 cut(s)	86, 570, 1287, 1970
Alw26I	GTCTC	3 cut(s)	1841, 2107, 2348
AlwI	GGATC	3 cut(s)	1686, 2310, 2323
AlwNI	CAGNNNCTG	6 cut(s)	983, 1214, 1397, 1583, 1835, 1991
Ama87I	CYCGRG	1 cut(s)	1413
AoxI	GGCC	2 cut(s)	14, 1765
ApoI	RAATTY	4 cut(s)	1271, 1368, 1403, 2290
AseI	ATTAAT	2 cut(s)	1719, 2375
AsiGI	ACCGGT	1 cut(s)	1006
AspLEI	GCGC	1 cut(s)	931
AspS9I	GGNCC	2 cut(s)	60, 1019
AsuC2I	CCSGG	2 cut(s)	438, 1262
AsuHPI	GGTGA	5 cut(s)	1208, 1267, 1637, 1811, 2450
AvaI	CYCGRG	1 cut(s)	1413
AvaII	GGWCC	2 cut(s)	60, 1019
AxyI	CCTNAGG	1 cut(s)	18
BamHI	GGATCC	1 cut(s)	2315
BanI	GGYRCC	2 cut(s)	794, 811
BanII	GRGCYC	2 cut(s)	86, 1287
BbsI	GAAGAC	2 cut(s)	390, 2026
Bbv12I	GWGCWC	4 cut(s)	86, 570, 1287, 1970
BccI	CCATC	9 cut(s)	184, 274, 332, 374, 989, 1045, 1166, 1370, 1886
BceAI	ACGGC	1 cut(s)	29
BcgI	CGANNNNNNTGC	2 cut(s)	1391, 1425
BciT130I	CCWGG	3 cut(s)	1566, 1959, 2432
BciVI	GTATCC	1 cut(s)	1306
BclI	TGATCA	1 cut(s)	1198
BcnI	CCSGG	2 cut(s)	438, 1262
BcoDI	GTCTC	3 cut(s)	1841, 2107, 2348
BfaI	CTAG	5 cut(s)	197, 300, 947, 1769, 2280
BfmI	CTRYAG	4 cut(s)	1575, 1827, 1860, 2221
BfrI	CTTAAG	1 cut(s)	137
BfuAI	ACCTGC	1 cut(s)	1168
BfuI	GTATCC	1 cut(s)	1306
BglII	AGATCT	2 cut(s)	667, 715
Bme1390I	CCNGG	5 cut(s)	438, 1262, 1566, 1959, 2432
Bme18I	GGWCC	2 cut(s)	60, 1019
BmeT110I	CYCGRG	1 cut(s)	1413
BmgT120I	GGNCC	2 cut(s)	60, 1019
BmiI	GGNNCC	5 cut(s)	210, 796, 813, 1158, 2317
BmrFI	CCNGG	5 cut(s)	438, 1262, 1566, 1959, 2432
BpiI	GAAGAC	2 cut(s)	390, 2026
BpmI	CTGGAG	1 cut(s)	2384
Bpu10I	CCTNAGC	2 cut(s)	80, 1670
BpuEI	CTTGAG	2 cut(s)	1718, 2066
BpuMI	CCSGG	2 cut(s)	438, 1262
BsaBI	GATNNNNATC	2 cut(s)	1560, 1806
BsaJI	CCNNGG	3 cut(s)	616, 1305, 2108
BsaWI	WCCGGW	1 cut(s)	1006
BsaXI	ACNNNNNCTCC	6 cut(s)	68, 98, 538, 568, 1719, 1749
Bsc4I	CCNNNNNNNGG	5 cut(s)	171, 767, 1028, 1675, 2285
Bse118I	RCCGGY	2 cut(s)	643, 1006
Bse1I	ACTGG	6 cut(s)	52, 456, 746, 769, 898, 2317
Bse21I	CCTNAGG	1 cut(s)	18
Bse3DI	GCAATG	1 cut(s)	1921
Bse8I	GATNNNNATC	2 cut(s)	1560, 1806
BseBI	CCWGG	3 cut(s)	1566, 1959, 2432
BseDI	CCNNGG	3 cut(s)	616, 1305, 2108
BseJI	GATNNNNATC	2 cut(s)	1560, 1806
BseLI	CCNNNNNNNGG	5 cut(s)	171, 767, 1028, 1675, 2285
BseMI	GCAATG	1 cut(s)	1921
BseMII	CTCAG	7 cut(s)	32, 71, 513, 807, 1014, 1827, 2433
BseNI	ACTGG	6 cut(s)	52, 456, 746, 769, 898, 2317
BseRI	GAGGAG	2 cut(s)	1715, 2125
BsgI	GTGCAG	3 cut(s)	444, 942, 1410
Bsh1285I	CGRYCG	1 cut(s)	1007
BshFI	GGCC	2 cut(s)	16, 1767
BshNI	GGYRCC	2 cut(s)	794, 811
BshTI	ACCGGT	1 cut(s)	1006
BsiEI	CGRYCG	1 cut(s)	1007
BsiHKAI	GWGCWC	4 cut(s)	86, 570, 1287, 1970
BsiHKCI	CYCGRG	1 cut(s)	1413
BsiSI	CCGG	4 cut(s)	438, 644, 1007, 1261
BslI	CCNNNNNNNGG	5 cut(s)	171, 767, 1028, 1675, 2285
BsmAI	GTCTC	3 cut(s)	1841, 2107, 2348
BsmBI	CGTCTC	1 cut(s)	2348
BsmI	GAATGC	1 cut(s)	1481
BsnI	GGCC	2 cut(s)	16, 1767
BsoBI	CYCGRG	1 cut(s)	1413
Bsp1286I	GDGCHC	4 cut(s)	86, 570, 1287, 1970
Bsp1407I	TGTACA	1 cut(s)	93
Bsp143I	GATC	9 cut(s)	3, 667, 715, 913, 1198, 1678, 1807, 2315, 2473
Bsp19I	CCATGG	1 cut(s)	1305
BspACI	CCGC	7 cut(s)	701, 1395, 1711, 1759, 2205, 2417, 2512
BspANI	GGCC	2 cut(s)	16, 1767
BspCNI	CTCAG	7 cut(s)	31, 72, 514, 808, 1015, 1828, 2434
BspHI	TCATGA	3 cut(s)	570, 1287, 1908
BspLI	GGNNCC	5 cut(s)	210, 796, 813, 1158, 2317
BspMAI	CTGCAG	4 cut(s)	1579, 1831, 1864, 2225
BspMI	ACCTGC	1 cut(s)	1168
BspPI	GGATC	3 cut(s)	1686, 2310, 2323
BspQI	GCTCTTC	1 cut(s)	1782
BspT107I	GGYRCC	2 cut(s)	794, 811
BspTI	CTTAAG	1 cut(s)	137
BsrBI	CCGCTC	1 cut(s)	1711
BsrDI	GCAATG	1 cut(s)	1921
BsrFI	RCCGGY	2 cut(s)	643, 1006
BsrGI	TGTACA	1 cut(s)	93
BsrI	ACTGG	6 cut(s)	52, 456, 746, 769, 898, 2317
BssAI	RCCGGY	2 cut(s)	643, 1006
BssECI	CCNNGG	3 cut(s)	616, 1305, 2108
BssMI	GATC	9 cut(s)	3, 667, 715, 913, 1198, 1678, 1807, 2315, 2473
BssT1I	CCWWGG	2 cut(s)	616, 1305
Bst2UI	CCWGG	3 cut(s)	1566, 1959, 2432
Bst4CI	ACNGT	5 cut(s)	863, 943, 1899, 1948, 2023
Bst6I	CTCTTC	3 cut(s)	1341, 1782, 2242
BstAFI	CTTAAG	1 cut(s)	137
BstAPI	GCANNNNNTGC	4 cut(s)	607, 1214, 1397, 1583
BstAUI	TGTACA	1 cut(s)	93
BstC8I	GCNNGC	8 cut(s)	758, 933, 1206, 1437, 1654, 1690, 1818, 2341
BstDEI	CTNAG	9 cut(s)	18, 80, 522, 816, 1023, 1670, 1836, 1971, 2442
BstDSI	CCRYGG	1 cut(s)	1305
BstENI	CCTNNNNNAGG	1 cut(s)	1673
BstHHI	GCGC	1 cut(s)	931
BstKTI	GATC	9 cut(s)	6, 670, 718, 916, 1201, 1681, 1810, 2318, 2476
BstMAI	GTCTC	3 cut(s)	1841, 2107, 2348
BstMBI	GATC	9 cut(s)	3, 667, 715, 913, 1198, 1678, 1807, 2315, 2473
BstMCI	CGRYCG	1 cut(s)	1007
BstNI	CCWGG	3 cut(s)	1566, 1959, 2432
BstNSI	RCATGY	2 cut(s)	467, 487
BstSCI	CCNGG	5 cut(s)	436, 1260, 1564, 1957, 2430
BstSFI	CTRYAG	4 cut(s)	1575, 1827, 1860, 2221
BstV2I	GAAGAC	2 cut(s)	390, 2026
BstX2I	RGATCY	3 cut(s)	667, 715, 2315
BstXI	CCANNNNNNTGG	1 cut(s)	1364
BstYI	RGATCY	3 cut(s)	667, 715, 2315
Bsu36I	CCTNAGG	1 cut(s)	18
BsuI	GTATCC	1 cut(s)	1306
BsuRI	GGCC	2 cut(s)	16, 1767
BtgI	CCRYGG	1 cut(s)	1305
BtsI	GCAGTG	2 cut(s)	1572, 2230
BtsIMutI	CAGTG	6 cut(s)	939, 1052, 1572, 1944, 2230, 2310
BveI	ACCTGC	1 cut(s)	1168
Cac8I	GCNNGC	8 cut(s)	758, 933, 1206, 1437, 1654, 1690, 1818, 2341
CaiI	CAGNNNCTG	6 cut(s)	983, 1214, 1397, 1583, 1835, 1991
CciI	TCATGA	3 cut(s)	570, 1287, 1908
CfoI	GCGC	1 cut(s)	931
Cfr10I	RCCGGY	2 cut(s)	643, 1006
Cfr13I	GGNCC	2 cut(s)	60, 1019
CsiI	ACCWGGT	1 cut(s)	2430
Csp6I	GTAC	4 cut(s)	94, 1034, 1125, 2096
CspAI	ACCGGT	1 cut(s)	1006
CviAII	CATG	7 cut(s)	464, 484, 571, 1229, 1288, 1306, 1909
CviQI	GTAC	4 cut(s)	94, 1034, 1125, 2096
DdeI	CTNAG	9 cut(s)	18, 80, 522, 816, 1023, 1670, 1836, 1971, 2442
DpnI	GATC	9 cut(s)	5, 669, 717, 915, 1200, 1680, 1809, 2317, 2475
DpnII	GATC	9 cut(s)	3, 667, 715, 913, 1198, 1678, 1807, 2315, 2473
DraI	TTTAAA	1 cut(s)	10
DraIII	CACNNNGTG	2 cut(s)	943, 2130
Eam1104I	CTCTTC	3 cut(s)	1341, 1782, 2242
EarI	CTCTTC	3 cut(s)	1341, 1782, 2242
EciI	GGCGGA	2 cut(s)	716, 2501
Ecl136II	GAGCTC	2 cut(s)	84, 1285
Eco130I	CCWWGG	2 cut(s)	616, 1305
Eco24I	GRGCYC	2 cut(s)	86, 1287
Eco32I	GATATC	1 cut(s)	1354
Eco47I	GGWCC	2 cut(s)	60, 1019
Eco53kI	GAGCTC	2 cut(s)	84, 1285
Eco57I	CTGAAG	4 cut(s)	402, 1763, 2069, 2102
Eco81I	CCTNAGG	1 cut(s)	18
Eco88I	CYCGRG	1 cut(s)	1413
EcoICRI	GAGCTC	2 cut(s)	84, 1285
EcoNI	CCTNNNNNAGG	1 cut(s)	1673
EcoRII	CCWGG	3 cut(s)	1564, 1957, 2430
EcoRV	GATATC	1 cut(s)	1354
EcoT14I	CCWWGG	2 cut(s)	616, 1305
EcoT38I	GRGCYC	2 cut(s)	86, 1287
ErhI	CCWWGG	2 cut(s)	616, 1305
Esp3I	CGTCTC	1 cut(s)	2348
FaeI	CATG	7 cut(s)	467, 487, 574, 1232, 1291, 1309, 1912
FatI	CATG	7 cut(s)	463, 483, 570, 1228, 1287, 1305, 1908
FauI	CCCGC	2 cut(s)	1704, 1752
FauNDI	CATATG	1 cut(s)	1335
FbaI	TGATCA	1 cut(s)	1198
FblI	GTMKAC	1 cut(s)	374
FriOI	GRGCYC	2 cut(s)	86, 1287
FspBI	CTAG	5 cut(s)	197, 300, 947, 1769, 2280
GlaI	GCGC	1 cut(s)	930
GsuI	CTGGAG	1 cut(s)	2384
HaeIII	GGCC	2 cut(s)	16, 1767
HapII	CCGG	4 cut(s)	438, 644, 1007, 1261
HhaI	GCGC	1 cut(s)	931
Hin1II	CATG	7 cut(s)	467, 487, 574, 1232, 1291, 1309, 1912
Hin6I	GCGC	1 cut(s)	929
HinP1I	GCGC	1 cut(s)	929
HindIII	AAGCTT	3 cut(s)	66, 1604, 2297
HinfI	GANTC	8 cut(s)	48, 182, 547, 1025, 1428, 1542, 2359, 2411
HpaII	CCGG	4 cut(s)	438, 644, 1007, 1261
HphI	GGTGA	5 cut(s)	1208, 1267, 1637, 1811, 2450
Hpy166II	GTNNAC	9 cut(s)	96, 375, 677, 859, 1034, 2096, 2124, 2276, 2452
Hpy8I	GTNNAC	9 cut(s)	96, 375, 677, 859, 1034, 2096, 2124, 2276, 2452
HpyAV	CCTTC	8 cut(s)	97, 823, 1104, 1235, 1546, 2048, 2169, 2471
HpyCH4III	ACNGT	5 cut(s)	863, 943, 1899, 1948, 2023
HpyCH4IV	ACGT	1 cut(s)	1683
HpyF3I	CTNAG	9 cut(s)	18, 80, 522, 816, 1023, 1670, 1836, 1971, 2442
HpySE526I	ACGT	1 cut(s)	1683
Hsp92II	CATG	7 cut(s)	467, 487, 574, 1232, 1291, 1309, 1912
HspAI	GCGC	1 cut(s)	929
Ksp22I	TGATCA	1 cut(s)	1198
Kzo9I	GATC	9 cut(s)	3, 667, 715, 913, 1198, 1678, 1807, 2315, 2473
LguI	GCTCTTC	1 cut(s)	1782
LmnI	GCTCC	2 cut(s)	89, 208
MabI	ACCWGGT	1 cut(s)	2430
MaeI	CTAG	5 cut(s)	197, 300, 947, 1769, 2280
MaeII	ACGT	1 cut(s)	1683
MaeIII	GTNAC	4 cut(s)	107, 819, 1783, 1822
MalI	GATC	9 cut(s)	5, 669, 717, 915, 1200, 1680, 1809, 2317, 2475
MbiI	CCGCTC	1 cut(s)	1711
MboI	GATC	9 cut(s)	3, 667, 715, 913, 1198, 1678, 1807, 2315, 2473
MfeI	CAATTG	1 cut(s)	413
MflI	RGATCY	3 cut(s)	667, 715, 2315
MhlI	GDGCHC	4 cut(s)	86, 570, 1287, 1970
MlyI	GAGTC	4 cut(s)	191, 556, 1034, 1551
MmeI	TCCRAC	2 cut(s)	1484, 2350
MslI	CAYNNNNRTG	3 cut(s)	633, 1209, 1386
MspA1I	CMGCKG	3 cut(s)	983, 1397, 1580
MspCI	CTTAAG	1 cut(s)	137
MspI	CCGG	4 cut(s)	438, 644, 1007, 1261
MspR9I	CCNGG	5 cut(s)	438, 1262, 1566, 1959, 2432
MunI	CAATTG	1 cut(s)	413
Mva1269I	GAATGC	1 cut(s)	1481
MvaI	CCWGG	3 cut(s)	1566, 1959, 2432
NciI	CCSGG	2 cut(s)	438, 1262
NcoI	CCATGG	1 cut(s)	1305
NdeI	CATATG	1 cut(s)	1335
NdeII	GATC	9 cut(s)	3, 667, 715, 913, 1198, 1678, 1807, 2315, 2473
NlaIII	CATG	7 cut(s)	467, 487, 574, 1232, 1291, 1309, 1912
NlaIV	GGNNCC	5 cut(s)	210, 796, 813, 1158, 2317
NmeAIII	GCCGAG	1 cut(s)	2020
NmuCI	GTSAC	1 cut(s)	1783
NspI	RCATGY	2 cut(s)	467, 487
PaeR7I	CTCGAG	1 cut(s)	1413
PagI	TCATGA	3 cut(s)	570, 1287, 1908
PciI	ACATGT	1 cut(s)	483
PciSI	GCTCTTC	1 cut(s)	1782
PctI	GAATGC	1 cut(s)	1481
PfeI	GAWTC	4 cut(s)	48, 1428, 2359, 2411
PfoI	TCCNGGA	1 cut(s)	436
PinAI	ACCGGT	1 cut(s)	1006
PleI	GAGTC	4 cut(s)	190, 555, 1033, 1550
PpsI	GAGTC	4 cut(s)	190, 555, 1033, 1550
PscI	ACATGT	1 cut(s)	483
PshBI	ATTAAT	2 cut(s)	1719, 2375
PsiI	TTATAA	1 cut(s)	1928
Psp124BI	GAGCTC	2 cut(s)	86, 1287
Psp6I	CCWGG	3 cut(s)	1564, 1957, 2430
PspGI	CCWGG	3 cut(s)	1564, 1957, 2430
PspN4I	GGNNCC	5 cut(s)	210, 796, 813, 1158, 2317
PspPI	GGNCC	2 cut(s)	60, 1019
PspXI	VCTCGAGB	1 cut(s)	1413
PstI	CTGCAG	4 cut(s)	1579, 1831, 1864, 2225
PstNI	CAGNNNCTG	6 cut(s)	983, 1214, 1397, 1583, 1835, 1991
PsuI	RGATCY	3 cut(s)	667, 715, 2315
PvuII	CAGCTG	2 cut(s)	983, 1580
RsaI	GTAC	4 cut(s)	95, 1035, 1126, 2097
RsaNI	GTAC	4 cut(s)	94, 1034, 1125, 2096
RseI	CAYNNNNRTG	3 cut(s)	633, 1209, 1386
SacI	GAGCTC	2 cut(s)	86, 1287
SapI	GCTCTTC	1 cut(s)	1782
Sau3AI	GATC	9 cut(s)	3, 667, 715, 913, 1198, 1678, 1807, 2315, 2473
Sau96I	GGNCC	2 cut(s)	60, 1019
SchI	GAGTC	4 cut(s)	191, 556, 1034, 1551
ScrFI	CCNGG	5 cut(s)	438, 1262, 1566, 1959, 2432
SduI	GDGCHC	4 cut(s)	86, 570, 1287, 1970
SexAI	ACCWGGT	1 cut(s)	2430
SfcI	CTRYAG	4 cut(s)	1575, 1827, 1860, 2221
Sfr274I	CTCGAG	1 cut(s)	1413
SinI	GGWCC	2 cut(s)	60, 1019
SlaI	CTCGAG	1 cut(s)	1413
SmiMI	CAYNNNNRTG	3 cut(s)	633, 1209, 1386
SmlI	CTYRAG	4 cut(s)	137, 1413, 1697, 2045
SmoI	CTYRAG	4 cut(s)	137, 1413, 1697, 2045
SsiI	CCGC	7 cut(s)	701, 1395, 1711, 1759, 2205, 2417, 2512
SspI	AATATT	2 cut(s)	500, 652
SspMI	CTAG	5 cut(s)	197, 300, 947, 1769, 2280
SstI	GAGCTC	2 cut(s)	86, 1287
StyD4I	CCNGG	5 cut(s)	436, 1260, 1564, 1957, 2430
StyI	CCWWGG	2 cut(s)	616, 1305
TaaI	ACNGT	5 cut(s)	863, 943, 1899, 1948, 2023
TaiI	ACGT	1 cut(s)	1686
TaqI	TCGA	3 cut(s)	1414, 1749, 2479
TaqII	GACCGA	1 cut(s)	77
TatI	WGTACW	1 cut(s)	93
TauI	GCSGC	2 cut(s)	1397, 2207
TfiI	GAWTC	4 cut(s)	48, 1428, 2359, 2411
TscAI	CASTG	6 cut(s)	946, 1059, 1579, 1951, 2230, 2317
TseFI	GTSAC	1 cut(s)	1783
Tsp45I	GTSAC	1 cut(s)	1783
TspDTI	ATGAA	9 cut(s)	42, 141, 339, 968, 1304, 1359, 1474, 1527, 2229
TspRI	CASTG	6 cut(s)	946, 1059, 1579, 1951, 2230, 2317
Vha464I	CTTAAG	1 cut(s)	137
VpaK11BI	GGWCC	2 cut(s)	60, 1019
VspI	ATTAAT	2 cut(s)	1719, 2375
XagI	CCTNNNNNAGG	1 cut(s)	1673
XapI	RAATTY	4 cut(s)	1271, 1368, 1403, 2290
XceI	RCATGY	2 cut(s)	467, 487
XhoI	CTCGAG	1 cut(s)	1413
XmiI	GTMKAC	1 cut(s)	374
XspI	CTAG	5 cut(s)	197, 300, 947, 1769, 2280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.