Rorug01G0107100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0011464
Physical Location & Seq
Reverse (-)
19208077 .. 19209905
1829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0107100.1

Sequence Viewer

Length: 1095 bp
ATGCGGACGAAGGCCTCATTCTTCGAAAAGCGTCGTGAGCAACAAGAGAGGCGCAGCTTGAATAAGTATCCTCATAGAATGTCCCGTAAGGGATATGCAGGGTTGGAGGATGAGTTGGCTACCGGAATGAGTGACGAAGAAGTTGATAGGGCCACTTTGTGGATAAAAGGACGGCAAACAAAGGATGGCAGTTTCAAGGATGAGGAGTCAAAAAAGACTGCTGAAAAGATAGCAAACTTGAAGAGAAAGGTTGCTAGTGGAGAACTAAATGCTGAAGGAACAAATTATGTCTTGACATTGGCTTTGGGGACTCCAGAGCATGGGGGAAGAGTGCAGGGAATAGGAGGTTTTGTCACTCCCTCTACTTACTTCCACCTCCCTAAACGTAGAAAAGAGATCATAGAAGCTACTGTCAGAGTTAGTGTGCATAAAATATTGTTAGAGGAGAGAGAGAAGATAGTAGAGGAGGCAAGGGAGAAGATACTAGAGGAGGCAAGGGAGAGGATAATTAAGGAAGCGAAAGAAATAATACTTGCAGATGAGCGGGCTATGTGGGAGGCCAAGTTTGCTGAACTTGAAGCAAAGGTAAATGGAAAAGAAGGTGCAACTATTCAGCCACATGCATCTGGCCAAGGAAGTTGCTCAAGGACAGTAGATGAGATTGCTCAAGAATCGGATAAAGCTCCGTTGGAAGAAGTAGCGAACAATGTGGATGGAACTAAAATTCGGAGCATTTTTGAAGCAATGGAAAACAAAACCCTCATGCATAAAAGGAAACGGACAAAGGTGGTTAAGGAAGGTAGGTTGGATAAACGTCCTTGCTCCAAGGGAGGTAATGAGTTTCCCAAGTTGGTTGAGAAAGTAGTTGTCAACCGTGAGGATGTCACTGAGGCTGTTGAAGAAAATGTCAATCTGACCAAGGAGCCGGGGAATGAGGAGGGGGTAGAATACGTGGATTTGACGATGTGTCCACCCACATCAAAGTCAAAGGTAGCTGAGGTTGAATGCAAGTTCGCAATAGGTTCTGTTGAACATATTGTTGCTTGTGCCACTGTTATTGTTCGCTCAAAAATCGTCTCGGCCGCGTGTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

364

Amino Acids

40.82

Weight (kDa)

8.08

Isoelectric Point (pI)

49.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 9 - 120 3.1e-10 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52240
fragaria_vesca FvH4_7g05860 FvH4_7g05860
malus_domestica MD02G1248000.v1.1 MD07G1068100.v1.1
prunus_persica Prupe.2G085400_v2.0.a1
pyrus_communis pycom02g21240 pycom07g05220
rosa_chinensis RchiOBHm_Chr1g0333121
rosa_laevigata RLG00000029625
rosa_multiflora Rmu_sc0007432.1_g000002
rosa_roxburghii Rroxscaffold_4G00317780
rosa_rugosa Rorug01G0107100 Rorug01G0107100 Rorug01G0107200
rosa_samantha Rh1AG130500 Rh1BG099600 Rh1CG124300 Rh1DG135800
rosa_wichuraiana Rw1G010250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 159, 320
AccBSI CCGCTC 1 cut(s) 544
AccII CGCG 1 cut(s) 1085
AciI CCGC 3 cut(s) 4, 544, 1083
AcoI YGGCCR 2 cut(s) 628, 1080
AcsI RAATTY 1 cut(s) 723
AcuI CTGAAG 1 cut(s) 294
AdeI CACNNNGTG 1 cut(s) 159
AfiI CCNNNNNNNGG 2 cut(s) 159, 320
AgsI TTSAA 8 cut(s) 61, 196, 241, 578, 740, 899, 1004, 1031
AhdI GACNNNNNGTC 1 cut(s) 966
AluBI AGCT 4 cut(s) 57, 407, 683, 995
AluI AGCT 4 cut(s) 57, 407, 683, 995
Alw26I GTCTC 1 cut(s) 1081
AoxI GGCC 5 cut(s) 12, 150, 558, 628, 1080
ApeKI GCWGC 1 cut(s) 54
ApoI RAATTY 1 cut(s) 723
ArsI GACNNNNNNTTYG 2 cut(s) 286, 318
AspLEI GCGC 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 150
AsuC2I CCSGG 1 cut(s) 927
AsuII TTCGAA 1 cut(s) 24
BalI TGGCCA 1 cut(s) 630
BbvCI CCTCAGC 1 cut(s) 996
BbvI GCAGC 1 cut(s) 66
BccI CCATC 2 cut(s) 179, 707
BceAI ACGGC 1 cut(s) 188
BciVI GTATCC 1 cut(s) 78
BcnI CCSGG 1 cut(s) 927
BcoDI GTCTC 1 cut(s) 1081
BfaI CTAG 3 cut(s) 255, 485, 1093
BfuI GTATCC 1 cut(s) 78
BisI GCNGC 2 cut(s) 55, 1083
BlsI GCNGC 2 cut(s) 56, 1084
Bme1390I CCNGG 1 cut(s) 927
BmeRI GACNNNNNGTC 1 cut(s) 966
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 1 cut(s) 924
BmrFI CCNGG 1 cut(s) 927
BmsI GCATC 1 cut(s) 632
BpmI CTGGAG 1 cut(s) 297
Bpu10I CCTNAGC 1 cut(s) 996
Bpu14I TTCGAA 1 cut(s) 24
BpuEI CTTGAG 2 cut(s) 628, 651
BpuMI CCSGG 1 cut(s) 927
BsaAI YACGTR 1 cut(s) 952
BsaJI CCNNGG 4 cut(s) 631, 825, 918, 926
BsaWI WCCGGW 1 cut(s) 122
BsaXI ACNNNNNCTCC 6 cut(s) 98, 128, 336, 366, 548, 578
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 320
Bse3DI GCAATG 1 cut(s) 750
BseDI CCNNGG 4 cut(s) 631, 825, 918, 926
BseGI GGATG 5 cut(s) 115, 190, 205, 718, 886
BseLI CCNNNNNNNGG 2 cut(s) 159, 320
BseMI GCAATG 1 cut(s) 750
BseMII CTCAG 2 cut(s) 879, 987
BseRI GAGGAG 5 cut(s) 218, 458, 479, 503, 950
BseX3I CGGCCG 1 cut(s) 1080
BseXI GCAGC 1 cut(s) 66
BsgI GTGCAG 1 cut(s) 353
Bsh1236I CGCG 1 cut(s) 1085
Bsh1285I CGRYCG 1 cut(s) 1083
BshFI GGCC 5 cut(s) 14, 152, 560, 630, 1082
BsiEI CGRYCG 1 cut(s) 1083
BsiSI CCGG 2 cut(s) 123, 926
BslFI GGGAC 2 cut(s) 67, 322
BslI CCNNNNNNNGG 2 cut(s) 159, 320
BsmAI GTCTC 1 cut(s) 1081
BsmBI CGTCTC 1 cut(s) 1081
BsmFI GGGAC 2 cut(s) 67, 322
BsmI GAATGC 1 cut(s) 1010
BsnI GGCC 5 cut(s) 14, 152, 560, 630, 1082
Bsp119I TTCGAA 1 cut(s) 24
Bsp143I GATC 1 cut(s) 396
BspACI CCGC 3 cut(s) 4, 544, 1083
BspANI GGCC 5 cut(s) 14, 152, 560, 630, 1082
BspCNI CTCAG 2 cut(s) 880, 988
BspFNI CGCG 1 cut(s) 1085
BspLI GGNNCC 1 cut(s) 924
BspT104I TTCGAA 1 cut(s) 24
BsrBI CCGCTC 1 cut(s) 544
BsrDI GCAATG 1 cut(s) 750
BssECI CCNNGG 4 cut(s) 631, 825, 918, 926
BssMI GATC 1 cut(s) 396
BssT1I CCWWGG 3 cut(s) 631, 825, 918
Bst4CI ACNGT 4 cut(s) 412, 652, 875, 1054
Bst6I CTCTTC 2 cut(s) 236, 322
BstBAI YACGTR 1 cut(s) 952
BstBI TTCGAA 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 546
BstDEI CTNAG 2 cut(s) 888, 996
BstF5I GGATG 5 cut(s) 115, 190, 205, 718, 886
BstFNI CGCG 1 cut(s) 1085
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 1 cut(s) 399
BstMAI GTCTC 1 cut(s) 1081
BstMBI GATC 1 cut(s) 396
BstMCI CGRYCG 1 cut(s) 1083
BstMWI GCNNNNNNNGC 2 cut(s) 37, 566
BstNSI RCATGY 1 cut(s) 623
BstSCI CCNGG 1 cut(s) 925
BstUI CGCG 1 cut(s) 1085
BstV1I GCAGC 1 cut(s) 66
BstZI CGGCCG 1 cut(s) 1080
BsuI GTATCC 1 cut(s) 78
BsuRI GGCC 5 cut(s) 14, 152, 560, 630, 1082
BtsCI GGATG 5 cut(s) 115, 190, 205, 718, 886
BtsIMutI CAGTG 2 cut(s) 885, 1050
Cac8I GCNNGC 1 cut(s) 546
CfoI GCGC 1 cut(s) 54
Cfr13I GGNCC 1 cut(s) 150
CseI GACGC 1 cut(s) 20
CspCI CAANNNNNGTGG 2 cut(s) 1039, 1074
CviAII CATG 3 cut(s) 320, 620, 763
DdeI CTNAG 2 cut(s) 888, 996
DpnI GATC 1 cut(s) 398
DpnII GATC 1 cut(s) 396
DraIII CACNNNGTG 1 cut(s) 159
DriI GACNNNNNGTC 1 cut(s) 966
EaeI YGGCCR 2 cut(s) 628, 1080
EagI CGGCCG 1 cut(s) 1080
Eam1104I CTCTTC 2 cut(s) 236, 322
Eam1105I GACNNNNNGTC 1 cut(s) 966
EarI CTCTTC 2 cut(s) 236, 322
EclXI CGGCCG 1 cut(s) 1080
Eco130I CCWWGG 3 cut(s) 631, 825, 918
Eco147I AGGCCT 1 cut(s) 14
Eco52I CGGCCG 1 cut(s) 1080
Eco57I CTGAAG 1 cut(s) 294
EcoT14I CCWWGG 3 cut(s) 631, 825, 918
EcoT22I ATGCAT 2 cut(s) 625, 768
ErhI CCWWGG 3 cut(s) 631, 825, 918
Esp3I CGTCTC 1 cut(s) 1081
FaeI CATG 3 cut(s) 323, 623, 766
FaqI GGGAC 2 cut(s) 67, 322
FatI CATG 3 cut(s) 319, 619, 762
FauI CCCGC 1 cut(s) 537
Fnu4HI GCNGC 2 cut(s) 55, 1083
FokI GGATG 5 cut(s) 122, 197, 212, 725, 893
Fsp4HI GCNGC 2 cut(s) 55, 1083
FspBI CTAG 3 cut(s) 255, 485, 1093
GlaI GCGC 1 cut(s) 53
GluI GCNGC 2 cut(s) 55, 1083
GsuI CTGGAG 1 cut(s) 297
HaeIII GGCC 5 cut(s) 14, 152, 560, 630, 1082
HapII CCGG 2 cut(s) 123, 926
HgaI GACGC 1 cut(s) 20
HhaI GCGC 1 cut(s) 54
Hin1II CATG 3 cut(s) 323, 623, 766
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HincII GTYRAC 1 cut(s) 871
HindII GTYRAC 1 cut(s) 871
HinfI GANTC 3 cut(s) 206, 310, 671
HpaII CCGG 2 cut(s) 123, 926
Hpy166II GTNNAC 2 cut(s) 871, 971
Hpy188I TCNGA 4 cut(s) 416, 676, 729, 915
Hpy188III TCNNGA 4 cut(s) 35, 292, 314, 668
Hpy8I GTNNAC 2 cut(s) 871, 971
Hpy99I CGWCG 1 cut(s) 36
HpyAV CCTTC 4 cut(s) 4, 269, 593, 791
HpyCH4III ACNGT 4 cut(s) 412, 652, 875, 1054
HpyCH4IV ACGT 3 cut(s) 385, 814, 951
HpyCH4V TGCA 8 cut(s) 98, 334, 427, 536, 605, 623, 766, 1008
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 566
HpyF3I CTNAG 2 cut(s) 888, 996
HpySE526I ACGT 3 cut(s) 385, 814, 951
Hsp92II CATG 3 cut(s) 323, 623, 766
HspAI GCGC 1 cut(s) 52
Kzo9I GATC 1 cut(s) 396
LmnI GCTCC 4 cut(s) 688, 729, 827, 922
LpnPI CCDG 6 cut(s) 84, 136, 320, 327, 612, 939
Lsp1109I GCAGC 1 cut(s) 66
LweI GCATC 1 cut(s) 632
MaeI CTAG 3 cut(s) 255, 485, 1093
MaeII ACGT 3 cut(s) 385, 814, 951
MaeIII GTNAC 4 cut(s) 131, 352, 883, 1088
MalI GATC 1 cut(s) 398
MbiI CCGCTC 1 cut(s) 544
MboI GATC 1 cut(s) 396
MboII GAAGA 8 cut(s) 13, 149, 253, 339, 466, 490, 704, 911
MlsI TGGCCA 1 cut(s) 630
MluCI AATT 3 cut(s) 283, 507, 723
MluNI TGGCCA 1 cut(s) 630
MlyI GAGTC 2 cut(s) 215, 304
MmeI TCCRAC 3 cut(s) 84, 669, 786
Mox20I TGGCCA 1 cut(s) 630
Mph1103I ATGCAT 2 cut(s) 625, 768
MscI TGGCCA 1 cut(s) 630
MseI TTAA 2 cut(s) 510, 792
Msp20I TGGCCA 1 cut(s) 630
MspI CCGG 2 cut(s) 123, 926
MspR9I CCNGG 1 cut(s) 927
Mva1269I GAATGC 1 cut(s) 1010
MvnI CGCG 1 cut(s) 1085
MwoI GCNNNNNNNGC 2 cut(s) 37, 566
NciI CCSGG 1 cut(s) 927
NdeII GATC 1 cut(s) 396
NlaIII CATG 3 cut(s) 323, 623, 766
NlaIV GGNNCC 1 cut(s) 924
NmeAIII GCCGAG 1 cut(s) 1058
NmuCI GTSAC 4 cut(s) 131, 352, 883, 1088
NsiI ATGCAT 2 cut(s) 625, 768
NspI RCATGY 1 cut(s) 623
NspV TTCGAA 1 cut(s) 24
PceI AGGCCT 1 cut(s) 14
PctI GAATGC 1 cut(s) 1010
PfeI GAWTC 1 cut(s) 671
PflMI CCANNNNNTGG 2 cut(s) 159, 320
PkrI GCNGC 2 cut(s) 56, 1084
PleI GAGTC 2 cut(s) 214, 304
PpsI GAGTC 2 cut(s) 214, 304
Ppu21I YACGTR 1 cut(s) 952
PspN4I GGNNCC 1 cut(s) 924
PspPI GGNCC 1 cut(s) 150
SaqAI TTAA 2 cut(s) 510, 792
SatI GCNGC 2 cut(s) 55, 1083
Sau3AI GATC 1 cut(s) 396
Sau96I GGNCC 1 cut(s) 150
SchI GAGTC 2 cut(s) 215, 304
ScrFI CCNGG 1 cut(s) 927
SfaNI GCATC 1 cut(s) 632
SfuI TTCGAA 1 cut(s) 24
SmlI CTYRAG 2 cut(s) 643, 666
SmoI CTYRAG 2 cut(s) 643, 666
Sse9I AATT 3 cut(s) 283, 507, 723
SseBI AGGCCT 1 cut(s) 14
SsiI CCGC 3 cut(s) 4, 544, 1083
SspI AATATT 1 cut(s) 435
SspMI CTAG 3 cut(s) 255, 485, 1093
StuI AGGCCT 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 925
StyI CCWWGG 3 cut(s) 631, 825, 918
TaaI ACNGT 4 cut(s) 412, 652, 875, 1054
TaiI ACGT 3 cut(s) 388, 817, 954
TaqI TCGA 1 cut(s) 24
TasI AATT 3 cut(s) 283, 507, 723
TauI GCSGC 1 cut(s) 1085
TfiI GAWTC 1 cut(s) 671
Tru1I TTAA 2 cut(s) 510, 792
Tru9I TTAA 2 cut(s) 510, 792
TscAI CASTG 2 cut(s) 892, 1057
TseFI GTSAC 4 cut(s) 131, 352, 883, 1088
TseI GCWGC 1 cut(s) 54
Tsp45I GTSAC 4 cut(s) 131, 352, 883, 1088
TspGWI ACGGA 2 cut(s) 675, 793
TspRI CASTG 2 cut(s) 892, 1057
Van91I CCANNNNNTGG 2 cut(s) 159, 320
XapI RAATTY 1 cut(s) 723
XceI RCATGY 1 cut(s) 623
XspI CTAG 3 cut(s) 255, 485, 1093
Zsp2I ATGCAT 2 cut(s) 625, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.