Rh1BG099600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0011464
Physical Location & Seq
Forward (+)
17409036 .. 17416204
7169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG099600.1

Sequence Viewer

Length: 2433 bp
ATGCATAATTCCAATCACGACATGCAAGATCGGAGGAGTAATTCAGGCATGGAGGATTCTCCTGGGATTACCATTGAATTTCTTCGGGCACGTTTACTGTCCGAAAGGTCTGTCTCTAGAAGCGCAAGACAAAGAGCTAATGAGCTGGAAAAAATGGTAGAAGAACTGGAGGAACAGCTTAAAATTGTTTCTCTTCAAAGAAAAATGGCTGAGAAAGCCACAGCAGATGTTCTTGCCATTTTGGAGGACCAGGGGGCAAGTGACATTTCTGAGGAATTTGATTCAAGCTCTGATCAGGAAACCCACCAAGAATCTGAAATGGGTAATAACTCGAGAAAGGAAGACGAGAGCTTTTTAATTTCAAAGGCGAGAAGAAATGAGCATGAGGAACATTTAGGTTCTGACCTTGATTCTTCTTCAATACCTGGTAGAAGCTTGTCTTGGAAAGGCCGCATTGATTCTCCGCGTTCTCGTGAAAAGTATAAGGAACCATCCATGAGAAGACGTAGCACTTTTTCAGCCATTGGTTCATCTTCTTCAAGACATAACCTTGGAAAATCTTGTCGCCAGATAAAACACCGAGAATCAAGGTCAGTAGTTGAGCGCTCCAAAGTTGAGCAGGTGAAGTTTGATGATTCTGAAGAAAATGGAGTTGCTGCTTCTTCAGAAGGTCTTCCAAATTGCTCATACAGTGACCCTGAGAAATTGGGAGAAGGTTCTGAATCCCAGAAAGAGAAAGTTTTATTGAAGGATGCACGCACAGGGAGCAAAGAACATCAAGGGAATGGTGACCTTGATTTTAATGGGCATGGAAGAAACAAAGACATGGAAAAAGCACTTGAATTTCAGGCACAACTTATTGGCCAAAATGAAGAGATGGAAAAGGCTCAAAGAGAATGGGAAGAGAAGTTCAGAGAAAATAACACCAGTACACCGGATTCGTGTGACCCTGGGAACCATTCAGATATCACTGAGGAAAGAGATGAGATGAAGGCTTCATTTCCTGCTGAGATTGCTGCCTCCCAAGCTCAGGAGGCAAAGTCAGAGGCAAGAGATGCTTGCCTATTTGAGGAAAAGACCAAAACGCAGCCAAATGGTTTTCTACCACCTTCAGATGTAGAGATGGGAGGAATGCAGGATCCGCTGAATAGAAGCAGTGTTGCTTCTGCCTCACCAGTTCAAGAATTTGCATTCCCCACGGCATATGAAAAGCAAACTCAAGAGAGCCTAGAAAACAATTCTCATCAACCTTCACCTGGCTCCCATCATGACCCACTTTTGCTTGGATCATCCCACAACAGGTCATCAGTTGCCTCTTCTTCCGATGAAGACAGTAGTTTACGTAATGCTTCAGGGAGCAGAAATGACCTGTATGCATTGGTGCCTCACGACTCACAGGATCGGTTGGGTGGTGTACTGGATGCACTTAAAAAAGCAAAGCTATCACTTCAGCAAAAAATGACTAGATTGCCTCTACTAGATGGTACATCTGTTCAGGAATCTATTGAACCGTCTATTCCTGCTATAACAACTGGAAGCAGATTGGATATTCCTGTTGGGTGTGCTGGGCTTTTCAGATTACCAACTGATTTTGCAGTTGAAGAAGCTGCGACTAAAAATAGCTACCTTGGTTTGGGATCTTCCTTATCATCTGCAAGATATTTTCCTGATAAGGGGATGGCAGCAGCTCCCACCGATCAATTTGTCAGAAGCACTTATATTGAGACTAGACCACCCTTTTCTAATCATGTTGGTGATCGATTCATCGCAAGCCCTTATGTTGAGAATAGACAAACCTTTTCTACTGGTGCTGGGGATCGAGTTGTTGCCAGTCCTTATGTGGAGACTAGAAGAGCTCTCTCTTCTAATGTTGCAGGTCAATTCATCACCAATCCCAGTATTGAGACTAGACCGCCCTTTTCTAACAATGTTGGTGATAGATTCGTCACAAGCCATTATGTTGATACTAGACCAACCTTTTCTACCAATGCTGGTGATCGATATGTCGCAAGTCCTTACCTTGATATCAGACCAACTTTTTCTTCTGATGCTGCTGGTCGATTTGTCACCAATCATAAAATCGAGACCAGACCAAATTTTCCCATGAATGTTGCTGATCAATTTGTTACTAGCGCCTCCGGTGAGACTGATTTTTCTGCTGATAATAGATTTCTTGGTGGTCACTATGCAGAATCTTGGTCAAGAGGTTCTACGCCGATTCCACATTTTGATCCCTACTTAGATATGAGCCAACCGTCATCCAGATATACCAATTCCACCACCTATGAGAACTACCCTCCTTTTTCAGACCCGACACCCTGGACAACATCTGATGAAGTATTAACAAGACCCTTTCCACGAAGGCCTGCTGGGGTACCCGCAGTTCATTTGTCATCGTATGATGATCCTGGCAGACCTAATATGTACAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

810

Amino Acids

89.86

Weight (kDa)

5.3

Isoelectric Point (pI)

62.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52240
fragaria_vesca FvH4_7g05860 FvH4_7g05860
malus_domestica MD02G1248000.v1.1 MD07G1068100.v1.1
prunus_persica Prupe.2G085400_v2.0.a1
pyrus_communis pycom02g21240 pycom07g05220
rosa_chinensis RchiOBHm_Chr1g0333121
rosa_laevigata RLG00000029625
rosa_multiflora Rmu_sc0007432.1_g000002
rosa_roxburghii Rroxscaffold_4G00317780
rosa_rugosa Rorug01G0107100 Rorug01G0107100 Rorug01G0107200
rosa_samantha Rh1AG130500 Rh1BG099600 Rh1CG124300 Rh1DG135800
rosa_wichuraiana Rw1G010250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 610
Acc36I ACCTGC 2 cut(s) 610, 1865
Acc65I GGTACC 1 cut(s) 2374
AccB1I GGYRCC 2 cut(s) 1381, 2374
AccII CGCG 1 cut(s) 466
AciI CCGC 5 cut(s) 451, 464, 1142, 1913, 2379
AclWI GGATC 8 cut(s) 1133, 1146, 1294, 1407, 1645, 1824, 2225, 2399
AcoI YGGCCR 1 cut(s) 862
AcsI RAATTY 5 cut(s) 77, 275, 842, 1184, 2095
AcuI CTGAAG 5 cut(s) 648, 660, 1095, 1335, 1433
AfaI GTAC 5 cut(s) 931, 1416, 1486, 2376, 2426
AfeI AGCGCT 1 cut(s) 605
AfiI CCNNNNNNNGG 6 cut(s) 1030, 1069, 1256, 1299, 1633, 1673
AjnI CCWGG 7 cut(s) 61, 249, 424, 949, 1255, 2318, 2407
AjuI GAANNNNNNNTTGG 4 cut(s) 424, 456, 2026, 2058
AloI GAACNNNNNNTCC 2 cut(s) 893, 925
Alw21I GWGCWC 1 cut(s) 1858
Alw26I GTCTC 6 cut(s) 118, 1718, 1838, 1898, 2078, 2138
AlwI GGATC 8 cut(s) 1133, 1146, 1294, 1407, 1645, 1824, 2225, 2399
Ama87I CYCGRG 1 cut(s) 331
Aor51HI AGCGCT 1 cut(s) 605
AoxI GGCC 3 cut(s) 448, 862, 2363
ApeKI GCWGC 7 cut(s) 656, 1016, 1087, 1607, 1682, 1685, 2051
ApoI RAATTY 5 cut(s) 77, 275, 842, 1184, 2095
ArsI GACNNNNNNTTYG 2 cut(s) 96, 128
Asp700I GAANNNNTTC 2 cut(s) 81, 672
Asp718I GGTACC 1 cut(s) 2374
AspLEI GCGC 3 cut(s) 125, 606, 2135
AspS9I GGNCC 1 cut(s) 247
AvaI CYCGRG 1 cut(s) 331
AvaII GGWCC 1 cut(s) 247
BaeGI GKGCMC 1 cut(s) 91
BaeI ACNNNNGTAYC 2 cut(s) 1476, 1509
BalI TGGCCA 1 cut(s) 864
BamHI GGATCC 1 cut(s) 1138
BanI GGYRCC 2 cut(s) 1381, 2374
BanII GRGCYC 1 cut(s) 1858
BauI CACGAG 1 cut(s) 471
BbsI GAAGAC 4 cut(s) 348, 508, 665, 1335
Bbv12I GWGCWC 1 cut(s) 1858
BbvI GCAGC 7 cut(s) 643, 1003, 1099, 1594, 1694, 1697, 2038
BccI CCATC 6 cut(s) 499, 871, 1117, 1272, 1475, 1672
BceAI ACGGC 1 cut(s) 1215
BciT130I CCWGG 7 cut(s) 63, 251, 426, 951, 1257, 2320, 2409
BclI TGATCA 2 cut(s) 292, 2116
BcoDI GTCTC 6 cut(s) 118, 1718, 1838, 1898, 2078, 2138
BfaI CTAG 9 cut(s) 117, 1229, 1464, 1478, 1728, 1848, 1908, 1968, 2130
BfoI RGCGCY 2 cut(s) 607, 2136
BfuAI ACCTGC 2 cut(s) 610, 1865
BisI GCNGC 8 cut(s) 451, 657, 1017, 1088, 1608, 1683, 1686, 2052
BlsI GCNGC 8 cut(s) 452, 658, 1018, 1089, 1609, 1684, 1687, 2053
Bme1390I CCNGG 7 cut(s) 63, 251, 426, 951, 1257, 2320, 2409
Bme18I GGWCC 1 cut(s) 247
BmeT110I CYCGRG 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 6 cut(s) 489, 956, 1140, 1261, 1383, 2376
BmrFI CCNGG 7 cut(s) 63, 251, 426, 951, 1257, 2320, 2409
BmrI ACTGGG 1 cut(s) 1890
BmsI GCATC 4 cut(s) 742, 1045, 1411, 2038
BmuI ACTGGG 1 cut(s) 1890
BpiI GAAGAC 4 cut(s) 348, 508, 665, 1335
BpmI CTGGAG 1 cut(s) 188
Bpu10I CCTNAGC 1 cut(s) 1029
BpuEI CTTGAG 1 cut(s) 1203
Bsa29I ATCGAT 2 cut(s) 1759, 1999
BsaAI YACGTR 1 cut(s) 1343
BsaI GGTCTC 1 cut(s) 2078
BsaJI CCNNGG 8 cut(s) 62, 250, 550, 949, 950, 1197, 1627, 2318
BsaWI WCCGGW 2 cut(s) 934, 2138
BsaXI ACNNNNNCTCC 2 cut(s) 1025, 1055
Bsc4I CCNNNNNNNGG 6 cut(s) 1030, 1069, 1256, 1299, 1633, 1673
Bse1I ACTGG 8 cut(s) 171, 927, 1175, 1422, 1537, 1810, 1830, 1896
BseBI CCWGG 7 cut(s) 63, 251, 426, 951, 1257, 2320, 2409
BseCI ATCGAT 2 cut(s) 1759, 1999
BseDI CCNNGG 8 cut(s) 62, 250, 550, 949, 950, 1197, 1627, 2318
BseGI GGATG 6 cut(s) 491, 757, 1289, 1426, 1683, 2258
BseLI CCNNNNNNNGG 6 cut(s) 1030, 1069, 1256, 1299, 1633, 1673
BseMII CTCAG 6 cut(s) 201, 261, 690, 963, 999, 1043
BseNI ACTGG 8 cut(s) 171, 927, 1175, 1422, 1537, 1810, 1830, 1896
BseRI GAGGAG 1 cut(s) 49
BseSI GKGCMC 1 cut(s) 91
BseXI GCAGC 7 cut(s) 643, 1003, 1099, 1594, 1694, 1697, 2038
BseYI CCCAGC 3 cut(s) 1565, 1811, 2369
Bsh1236I CGCG 1 cut(s) 466
BshFI GGCC 3 cut(s) 450, 864, 2365
BshNI GGYRCC 2 cut(s) 1381, 2374
BshVI ATCGAT 2 cut(s) 1759, 1999
BsiHKAI GWGCWC 1 cut(s) 1858
BsiHKCI CYCGRG 1 cut(s) 331
BsiSI CCGG 2 cut(s) 935, 2139
BslI CCNNNNNNNGG 6 cut(s) 1030, 1069, 1256, 1299, 1633, 1673
BsmAI GTCTC 6 cut(s) 118, 1718, 1838, 1898, 2078, 2138
BsmI GAATGC 2 cut(s) 1137, 1190
BsnI GGCC 3 cut(s) 450, 864, 2365
Bso31I GGTCTC 1 cut(s) 2078
BsoBI CYCGRG 1 cut(s) 331
Bsp1286I GDGCHC 2 cut(s) 91, 1858
Bsp1407I TGTACA 1 cut(s) 2424
BspACI CCGC 5 cut(s) 451, 464, 1142, 1913, 2379
BspANI GGCC 3 cut(s) 450, 864, 2365
BspCNI CTCAG 6 cut(s) 202, 262, 691, 964, 1000, 1042
BspDI ATCGAT 2 cut(s) 1759, 1999
BspFNI CGCG 1 cut(s) 466
BspHI TCATGA 1 cut(s) 1267
BspLI GGNNCC 6 cut(s) 489, 956, 1140, 1261, 1383, 2376
BspMI ACCTGC 2 cut(s) 610, 1865
BspPI GGATC 8 cut(s) 1133, 1146, 1294, 1407, 1645, 1824, 2225, 2399
BspQI GCTCTTC 1 cut(s) 1846
BspT107I GGYRCC 2 cut(s) 1381, 2374
BspTNI GGTCTC 1 cut(s) 2078
BsrGI TGTACA 1 cut(s) 2424
BsrI ACTGG 8 cut(s) 171, 927, 1175, 1422, 1537, 1810, 1830, 1896
BssECI CCNNGG 8 cut(s) 62, 250, 550, 949, 950, 1197, 1627, 2318
BssSI CACGAG 1 cut(s) 471
BssT1I CCWWGG 2 cut(s) 550, 1627
Bst2BI CACGAG 1 cut(s) 471
Bst2UI CCWGG 7 cut(s) 63, 251, 426, 951, 1257, 2320, 2409
Bst4CI ACNGT 5 cut(s) 99, 692, 1334, 1512, 2256
Bst6I CTCTTC 6 cut(s) 198, 867, 897, 1321, 1846, 1867
BstAPI GCANNNNNTGC 1 cut(s) 1055
BstAUI TGTACA 1 cut(s) 2424
BstBAI YACGTR 1 cut(s) 1343
BstC8I GCNNGC 4 cut(s) 757, 1060, 1771, 2367
BstDEI CTNAG 7 cut(s) 210, 270, 699, 972, 1008, 1029, 2239
BstDSI CCRYGG 1 cut(s) 1197
BstEII GGTNACC 1 cut(s) 788
BstENI CCTNNNNNAGG 1 cut(s) 1067
BstF5I GGATG 6 cut(s) 491, 757, 1289, 1426, 1683, 2258
BstFNI CGCG 1 cut(s) 466
BstH2I RGCGCY 2 cut(s) 607, 2136
BstHHI GCGC 3 cut(s) 125, 606, 2135
BstMAI GTCTC 6 cut(s) 118, 1718, 1838, 1898, 2078, 2138
BstMWI GCNNNNNNNGC 7 cut(s) 215, 765, 1013, 1025, 1034, 1055, 1141
BstNI CCWGG 7 cut(s) 63, 251, 426, 951, 1257, 2320, 2409
BstNSI RCATGY 1 cut(s) 25
BstPI GGTNACC 1 cut(s) 788
BstSCI CCNGG 7 cut(s) 61, 249, 424, 949, 1255, 2318, 2407
BstSLI GKGCMC 1 cut(s) 91
BstSNI TACGTA 1 cut(s) 1343
BstUI CGCG 1 cut(s) 466
BstV1I GCAGC 7 cut(s) 643, 1003, 1099, 1594, 1694, 1697, 2038
BstV2I GAAGAC 4 cut(s) 348, 508, 665, 1335
BstX2I RGATCY 2 cut(s) 1138, 1637
BstYI RGATCY 2 cut(s) 1138, 1637
Bsu15I ATCGAT 2 cut(s) 1759, 1999
BsuRI GGCC 3 cut(s) 450, 864, 2365
BsuTUI ATCGAT 2 cut(s) 1759, 1999
BtgI CCRYGG 1 cut(s) 1197
BtgZI GCGATG 1 cut(s) 1750
BtsCI GGATG 6 cut(s) 491, 757, 1289, 1426, 1683, 2258
BtsI GCAGTG 1 cut(s) 1162
BtsIMutI CAGTG 3 cut(s) 697, 969, 1162
BveI ACCTGC 2 cut(s) 610, 1865
Cac8I GCNNGC 4 cut(s) 757, 1060, 1771, 2367
CciI TCATGA 1 cut(s) 1267
CfoI GCGC 3 cut(s) 125, 606, 2135
Cfr13I GGNCC 1 cut(s) 247
ClaI ATCGAT 2 cut(s) 1759, 1999
CsiI ACCWGGT 1 cut(s) 424
Csp6I GTAC 5 cut(s) 930, 1415, 1485, 2375, 2425
CviAII CATG 9 cut(s) 22, 49, 383, 496, 809, 826, 1268, 1748, 2104
CviQI GTAC 5 cut(s) 930, 1415, 1485, 2375, 2425
DdeI CTNAG 7 cut(s) 210, 270, 699, 972, 1008, 1029, 2239
EaeI YGGCCR 1 cut(s) 862
Eam1104I CTCTTC 6 cut(s) 198, 867, 897, 1321, 1846, 1867
EarI CTCTTC 6 cut(s) 198, 867, 897, 1321, 1846, 1867
Ecl136II GAGCTC 1 cut(s) 1856
Eco105I TACGTA 1 cut(s) 1343
Eco130I CCWWGG 2 cut(s) 550, 1627
Eco147I AGGCCT 1 cut(s) 2365
Eco24I GRGCYC 1 cut(s) 1858
Eco31I GGTCTC 1 cut(s) 2078
Eco32I GATATC 2 cut(s) 967, 2026
Eco47I GGWCC 1 cut(s) 247
Eco47III AGCGCT 1 cut(s) 605
Eco53kI GAGCTC 1 cut(s) 1856
Eco57I CTGAAG 5 cut(s) 648, 660, 1095, 1335, 1433
Eco88I CYCGRG 1 cut(s) 331
Eco91I GGTNACC 1 cut(s) 788
EcoICRI GAGCTC 1 cut(s) 1856
EcoNI CCTNNNNNAGG 1 cut(s) 1067
EcoO65I GGTNACC 1 cut(s) 788
EcoRII CCWGG 7 cut(s) 61, 249, 424, 949, 1255, 2318, 2407
EcoRV GATATC 2 cut(s) 967, 2026
EcoT14I CCWWGG 2 cut(s) 550, 1627
EcoT22I ATGCAT 2 cut(s) 6, 1378
EcoT38I GRGCYC 1 cut(s) 1858
ErhI CCWWGG 2 cut(s) 550, 1627
FaeI CATG 9 cut(s) 25, 52, 386, 499, 812, 829, 1271, 1751, 2107
FalI AAGNNNNNCTT 4 cut(s) 424, 456, 1042, 1074
FatI CATG 9 cut(s) 21, 48, 382, 495, 808, 825, 1267, 1747, 2103
FauI CCCGC 1 cut(s) 2386
FauNDI CATATG 1 cut(s) 1204
FbaI TGATCA 2 cut(s) 292, 2116
Fnu4HI GCNGC 8 cut(s) 451, 657, 1017, 1088, 1608, 1683, 1686, 2052
FokI GGATG 6 cut(s) 478, 764, 1276, 1433, 1690, 2245
FriOI GRGCYC 1 cut(s) 1858
Fsp4HI GCNGC 8 cut(s) 451, 657, 1017, 1088, 1608, 1683, 1686, 2052
FspBI CTAG 9 cut(s) 117, 1229, 1464, 1478, 1728, 1848, 1908, 1968, 2130
GlaI GCGC 3 cut(s) 124, 605, 2134
GluI GCNGC 8 cut(s) 451, 657, 1017, 1088, 1608, 1683, 1686, 2052
GsaI CCCAGC 3 cut(s) 1569, 1815, 2373
GsuI CTGGAG 1 cut(s) 188
HaeII RGCGCY 2 cut(s) 607, 2136
HaeIII GGCC 3 cut(s) 450, 864, 2365
HapII CCGG 2 cut(s) 935, 2139
HhaI GCGC 3 cut(s) 125, 606, 2135
Hin1II CATG 9 cut(s) 25, 52, 386, 499, 812, 829, 1271, 1751, 2107
Hin6I GCGC 3 cut(s) 123, 604, 2133
HinP1I GCGC 3 cut(s) 123, 604, 2133
HindIII AAGCTT 1 cut(s) 433
HpaII CCGG 2 cut(s) 935, 2139
Hpy166II GTNNAC 4 cut(s) 95, 932, 1340, 1415
Hpy8I GTNNAC 4 cut(s) 95, 932, 1340, 1415
HpyAV CCTTC 7 cut(s) 662, 707, 742, 985, 1119, 1260, 2355
HpyCH4III ACNGT 5 cut(s) 99, 692, 1334, 1512, 2256
HpyCH4IV ACGT 3 cut(s) 91, 505, 1342
HpyF10VI GCNNNNNNNGC 7 cut(s) 215, 765, 1013, 1025, 1034, 1055, 1141
HpyF3I CTNAG 7 cut(s) 210, 270, 699, 972, 1008, 1029, 2239
HpySE526I ACGT 3 cut(s) 91, 505, 1342
Hsp92II CATG 9 cut(s) 25, 52, 386, 499, 812, 829, 1271, 1751, 2107
HspAI GCGC 3 cut(s) 123, 604, 2133
KpnI GGTACC 1 cut(s) 2378
Ksp22I TGATCA 2 cut(s) 292, 2116
LguI GCTCTTC 1 cut(s) 1846
LmnI GCTCC 5 cut(s) 611, 765, 1265, 1356, 1693
Lsp1109I GCAGC 7 cut(s) 643, 1003, 1099, 1594, 1694, 1697, 2038
LweI GCATC 4 cut(s) 742, 1045, 1411, 2038
MabI ACCWGGT 1 cut(s) 424
MaeI CTAG 9 cut(s) 117, 1229, 1464, 1478, 1728, 1848, 1908, 1968, 2130
MaeII ACGT 3 cut(s) 91, 505, 1342
MaeIII GTNAC 8 cut(s) 260, 692, 788, 944, 1945, 2065, 2125, 2180
MflI RGATCY 2 cut(s) 1138, 1637
MhlI GDGCHC 2 cut(s) 91, 1858
MlsI TGGCCA 1 cut(s) 864
MluNI TGGCCA 1 cut(s) 864
MlyI GAGTC 1 cut(s) 1385
Mox20I TGGCCA 1 cut(s) 864
Mph1103I ATGCAT 2 cut(s) 6, 1378
MroXI GAANNNNTTC 2 cut(s) 81, 672
MscI TGGCCA 1 cut(s) 864
MseI TTAA 5 cut(s) 180, 356, 801, 1428, 2342
MslI CAYNNNNRTG 1 cut(s) 1752
Msp20I TGGCCA 1 cut(s) 864
MspA1I CMGCKG 1 cut(s) 1144
MspI CCGG 2 cut(s) 935, 2139
MspR9I CCNGG 7 cut(s) 63, 251, 426, 951, 1257, 2320, 2409
Mva1269I GAATGC 2 cut(s) 1137, 1190
MvaI CCWGG 7 cut(s) 63, 251, 426, 951, 1257, 2320, 2409
MvnI CGCG 1 cut(s) 466
MwoI GCNNNNNNNGC 7 cut(s) 215, 765, 1013, 1025, 1034, 1055, 1141
NdeI CATATG 1 cut(s) 1204
NlaIII CATG 9 cut(s) 25, 52, 386, 499, 812, 829, 1271, 1751, 2107
NlaIV GGNNCC 6 cut(s) 489, 956, 1140, 1261, 1383, 2376
NmuCI GTSAC 7 cut(s) 260, 692, 788, 944, 1945, 2065, 2180
NsiI ATGCAT 2 cut(s) 6, 1378
NspI RCATGY 1 cut(s) 25
PaeR7I CTCGAG 1 cut(s) 331
PagI TCATGA 1 cut(s) 1267
PaqCI CACCTGC 1 cut(s) 610
PasI CCCWGGG 1 cut(s) 950
PceI AGGCCT 1 cut(s) 2365
PciSI GCTCTTC 1 cut(s) 1846
PctI GAATGC 2 cut(s) 1137, 1190
PdmI GAANNNNTTC 2 cut(s) 81, 672
PkrI GCNGC 8 cut(s) 452, 658, 1018, 1089, 1609, 1684, 1687, 2053
PleI GAGTC 1 cut(s) 1385
PpsI GAGTC 1 cut(s) 1385
Ppu21I YACGTR 1 cut(s) 1343
Psp124BI GAGCTC 1 cut(s) 1858
Psp6I CCWGG 7 cut(s) 61, 249, 424, 949, 1255, 2318, 2407
PspEI GGTNACC 1 cut(s) 788
PspFI CCCAGC 3 cut(s) 1565, 1811, 2369
PspGI CCWGG 7 cut(s) 61, 249, 424, 949, 1255, 2318, 2407
PspN4I GGNNCC 6 cut(s) 489, 956, 1140, 1261, 1383, 2376
PspPI GGNCC 1 cut(s) 247
PsrI GAACNNNNNNTAC 2 cut(s) 2367, 2399
PsuI RGATCY 2 cut(s) 1138, 1637
RsaI GTAC 5 cut(s) 931, 1416, 1486, 2376, 2426
RsaNI GTAC 5 cut(s) 930, 1415, 1485, 2375, 2425
RseI CAYNNNNRTG 1 cut(s) 1752
SacI GAGCTC 1 cut(s) 1858
SapI GCTCTTC 1 cut(s) 1846
SaqAI TTAA 5 cut(s) 180, 356, 801, 1428, 2342
SatI GCNGC 8 cut(s) 451, 657, 1017, 1088, 1608, 1683, 1686, 2052
Sau96I GGNCC 1 cut(s) 247
SchI GAGTC 1 cut(s) 1385
ScrFI CCNGG 7 cut(s) 63, 251, 426, 951, 1257, 2320, 2409
SduI GDGCHC 2 cut(s) 91, 1858
SexAI ACCWGGT 1 cut(s) 424
SfaNI GCATC 4 cut(s) 742, 1045, 1411, 2038
Sfr274I CTCGAG 1 cut(s) 331
SinI GGWCC 1 cut(s) 247
SlaI CTCGAG 1 cut(s) 331
SmiMI CAYNNNNRTG 1 cut(s) 1752
SmlI CTYRAG 2 cut(s) 331, 1218
SmoI CTYRAG 2 cut(s) 331, 1218
SnaBI TACGTA 1 cut(s) 1343
SseBI AGGCCT 1 cut(s) 2365
SsiI CCGC 5 cut(s) 451, 464, 1142, 1913, 2379
SspMI CTAG 9 cut(s) 117, 1229, 1464, 1478, 1728, 1848, 1908, 1968, 2130
SstI GAGCTC 1 cut(s) 1858
StuI AGGCCT 1 cut(s) 2365
StyD4I CCNGG 7 cut(s) 61, 249, 424, 949, 1255, 2318, 2407
StyI CCWWGG 2 cut(s) 550, 1627
TaaI ACNGT 5 cut(s) 99, 692, 1334, 1512, 2256
TaiI ACGT 3 cut(s) 94, 508, 1345
TaqI TCGA 6 cut(s) 332, 1759, 1819, 1999, 2059, 2082
TatI WGTACW 3 cut(s) 929, 1414, 2424
TauI GCSGC 1 cut(s) 453
Tru1I TTAA 5 cut(s) 180, 356, 801, 1428, 2342
Tru9I TTAA 5 cut(s) 180, 356, 801, 1428, 2342
TscAI CASTG 3 cut(s) 697, 976, 1162
TseFI GTSAC 7 cut(s) 260, 692, 788, 944, 1945, 2065, 2180
TseI GCWGC 7 cut(s) 656, 1016, 1087, 1607, 1682, 1685, 2051
Tsp45I GTSAC 7 cut(s) 260, 692, 788, 944, 1945, 2065, 2180
TspRI CASTG 3 cut(s) 697, 976, 1162
VpaK11BI GGWCC 1 cut(s) 247
XagI CCTNNNNNAGG 1 cut(s) 1067
XapI RAATTY 5 cut(s) 77, 275, 842, 1184, 2095
XbaI TCTAGA 1 cut(s) 116
XceI RCATGY 1 cut(s) 25
XcmI CCANNNNNNNNNTGG 1 cut(s) 1837
XhoI CTCGAG 1 cut(s) 331
XmnI GAANNNNTTC 2 cut(s) 81, 672
XspI CTAG 9 cut(s) 117, 1229, 1464, 1478, 1728, 1848, 1908, 1968, 2130
Zsp2I ATGCAT 2 cut(s) 6, 1378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.