Rorug01G0130500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0010056
Physical Location & Seq
Forward (+)
22125821 .. 22126222
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0130500.1

Sequence Viewer

Length: 402 bp
ATGAGGATATACGAGGTGGTGATGGAGGAGATAACAGTGTACATGGGGCTATCACCGGCGATGTTTTTCACAATCGTTAGGATGATGGTCATTGTTTACAGATATGTTACCACAATGTTTAAGGCTCTCGAAGATTACAACAATCCTCCGGTGGTGAGTAGTGCTAATTCAGAATTGGTGAACAAGTATTTCAATCCCAAGATCGCCACGACGCCAAGCTCAATCCAAGTCGAGGATATGACGGAGCAAGAGCTTAGAGGATATGATGGGTCTGACCCCAATAAGCCCCTTCTTATGGCCATCAAAGCTCAGATCTACGACGTGTTTACACGCTCTGTTTACATTTTGGGGCACAACCAAAGAACCTTACTGGAAAAGAGGTCATCGAAAGCTAGAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.38

Weight (kDa)

6.6

Isoelectric Point (pI)

48.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 297
AcyI GRCGYC 1 cut(s) 212
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 2 cut(s) 232, 295
AflIII ACRYGT 1 cut(s) 321
AgsI TTSAA 1 cut(s) 193
AjiI CACGTC 1 cut(s) 322
AluBI AGCT 4 cut(s) 219, 253, 308, 392
AluI AGCT 4 cut(s) 219, 253, 308, 392
AoxI GGCC 1 cut(s) 297
AsuHPI GGTGA 4 cut(s) 31, 45, 166, 190
BaeGI GKGCMC 1 cut(s) 354
BalI TGGCCA 1 cut(s) 299
BccI CCATC 4 cut(s) 16, 79, 260, 308
BfaI CTAG 1 cut(s) 393
BglII AGATCT 1 cut(s) 312
BmgBI CACGTC 1 cut(s) 322
BsaHI GRCGYC 1 cut(s) 212
BsaWI WCCGGW 1 cut(s) 148
Bsc4I CCNNNNNNNGG 2 cut(s) 232, 295
Bse118I RCCGGY 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 375
BseGI GGATG 1 cut(s) 87
BseLI CCNNNNNNNGG 2 cut(s) 232, 295
BseMII CTCAG 1 cut(s) 323
BseNI ACTGG 1 cut(s) 375
BseRI GAGGAG 1 cut(s) 41
BseSI GKGCMC 1 cut(s) 354
BshFI GGCC 1 cut(s) 299
BsiSI CCGG 2 cut(s) 56, 149
BslI CCNNNNNNNGG 2 cut(s) 232, 295
BsnI GGCC 1 cut(s) 299
Bsp1286I GDGCHC 1 cut(s) 354
Bsp1407I TGTACA 1 cut(s) 39
Bsp143I GATC 2 cut(s) 201, 312
BspANI GGCC 1 cut(s) 299
BspCNI CTCAG 1 cut(s) 322
BsrFI RCCGGY 1 cut(s) 55
BsrGI TGTACA 1 cut(s) 39
BsrI ACTGG 1 cut(s) 375
BssAI RCCGGY 1 cut(s) 55
BssMI GATC 2 cut(s) 201, 312
BssNI GRCGYC 1 cut(s) 212
Bst4CI ACNGT 1 cut(s) 37
BstACI GRCGYC 1 cut(s) 212
BstAUI TGTACA 1 cut(s) 39
BstDEI CTNAG 2 cut(s) 254, 309
BstF5I GGATG 1 cut(s) 87
BstKTI GATC 2 cut(s) 204, 315
BstMBI GATC 2 cut(s) 201, 312
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstSLI GKGCMC 1 cut(s) 354
BstX2I RGATCY 1 cut(s) 312
BstYI RGATCY 1 cut(s) 312
BsuRI GGCC 1 cut(s) 299
BtgZI GCGATG 1 cut(s) 74
BtrI CACGTC 1 cut(s) 322
BtsCI GGATG 1 cut(s) 87
BtsIMutI CAGTG 1 cut(s) 42
Cfr10I RCCGGY 1 cut(s) 55
CseI GACGC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 40
CviAII CATG 1 cut(s) 43
CviJI RGCY 8 cut(s) 49, 125, 219, 253, 286, 299, 308, 392
CviKI_1 RGCY 8 cut(s) 49, 125, 219, 253, 286, 299, 308, 392
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 2 cut(s) 254, 309
DpnI GATC 2 cut(s) 203, 314
DpnII GATC 2 cut(s) 201, 312
EaeI YGGCCR 1 cut(s) 297
FaeI CATG 1 cut(s) 46
FaiI YATR 6 cut(s) 10, 44, 105, 239, 264, 296
FatI CATG 1 cut(s) 42
FokI GGATG 1 cut(s) 94
FspBI CTAG 1 cut(s) 393
HaeIII GGCC 1 cut(s) 299
HapII CCGG 2 cut(s) 56, 149
HgaI GACGC 1 cut(s) 220
Hin1I GRCGYC 1 cut(s) 212
Hin1II CATG 1 cut(s) 46
HpaII CCGG 2 cut(s) 56, 149
HphI GGTGA 4 cut(s) 31, 45, 166, 190
Hpy166II GTNNAC 5 cut(s) 40, 97, 181, 327, 340
Hpy188I TCNGA 3 cut(s) 172, 274, 312
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 5 cut(s) 40, 97, 181, 327, 340
Hpy99I CGWCG 2 cut(s) 214, 323
HpyAV CCTTC 1 cut(s) 299
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 321
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 2 cut(s) 254, 309
HpySE526I ACGT 1 cut(s) 321
Hsp92I GRCGYC 1 cut(s) 212
Hsp92II CATG 1 cut(s) 46
Kzo9I GATC 2 cut(s) 201, 312
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 3 cut(s) 69, 162, 356
MaeI CTAG 1 cut(s) 393
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 106
MalI GATC 2 cut(s) 203, 314
MboI GATC 2 cut(s) 201, 312
MboII GAAGA 1 cut(s) 143
MflI RGATCY 1 cut(s) 312
MhlI GDGCHC 1 cut(s) 354
MlsI TGGCCA 1 cut(s) 299
MluCI AATT 2 cut(s) 166, 173
MluNI TGGCCA 1 cut(s) 299
MnlI CCTC 6 cut(s) 7, 19, 156, 226, 251, 372
Mox20I TGGCCA 1 cut(s) 299
MscI TGGCCA 1 cut(s) 299
MseI TTAA 1 cut(s) 120
Msp20I TGGCCA 1 cut(s) 299
MspI CCGG 2 cut(s) 56, 149
MwoI GCNNNNNNNGC 1 cut(s) 305
NdeII GATC 2 cut(s) 201, 312
NlaIII CATG 1 cut(s) 46
PsuI RGATCY 1 cut(s) 312
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
SaqAI TTAA 1 cut(s) 120
Sau3AI GATC 2 cut(s) 201, 312
SduI GDGCHC 1 cut(s) 354
SetI ASST 8 cut(s) 18, 221, 255, 310, 324, 368, 383, 394
SgrAI CRCCGGYG 1 cut(s) 55
Sse9I AATT 2 cut(s) 166, 173
SspMI CTAG 1 cut(s) 393
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 1 cut(s) 324
TaqI TCGA 3 cut(s) 129, 231, 386
TasI AATT 2 cut(s) 166, 173
TatI WGTACW 1 cut(s) 39
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 1 cut(s) 42
TspGWI ACGGA 1 cut(s) 257
TspRI CASTG 1 cut(s) 42
XspI CTAG 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.