Rorug03G0058700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0010056
Physical Location & Seq
Forward (+)
4404337 .. 4405942
1606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0058700.1

Sequence Viewer

Length: 1380 bp
ATGGCTGCCTTTTGCGATTTACACAAGAATAATTATACTAGAGCAGTAATTGCTATTCTTTTATTTCATCTTATATATTGTCCTGTTATAGCAGCAGCCAATATCGACAATAATTATGGTGGCTTCAGTGCGCATCTTATTCGAATAAATTTCAAAAATCCACCATTGCACAGACCCAGACACCACAAATCTGGTCGACGTTTGATAGGTCCAGACACGCCACAAGCTACACTACAAACTGATCCAGATAAACAAGATGGACATCTTATGAAGCTCTCCGTAGGAACCCCGGCCTTCGATATCTATTTAGCAATTGATACAGGCAGCACTCTATTATGGACACATTGCCAGCCATGTCAAACTTGCAAAGAGACGAAACATGGCATGTTTGACCCGAAAAAATCCTCAACTTATAAGGATGTTCCTTGTTCTGCTGGTGAGTGCAAAATTCTCGGCCAGTTCGAACAAGATGATGGCTATTGCAAAGATCCTAAAGACACTTGCAGGTATTATTTCGAGTATTTAGATACGACATTCTCTACAGGTGTAATGGCTAAAGAAACAGTTACCTTAAATACCACATCAGGTAAGGCTGTAACCCTAAAAGATATTCTTATTGGGTGTGCGCAAGAGCAGAAAGGTGCTACTTACACGGACGATGAAATGGGAATAATTGGGCTTGGAGGAGGGAACTTGTCATTTGTTTCTCAAATTGCTCCCTATGCTGGAGGCAAAAAATTCTCTCATTGTTTCGTGCCTAGGGATGCTGATCCCAATATCGAAAGCAAGATCAATTTCGGAAAAGGGAGTGAAGTTGTGGGTGAAGGGGTGGTGTCCACACCATTGCTCGAATCACGCGGGGATGCTTATATGATCGAAGTAGAAGGAATTACTATTGGAAATGATTTTGTTCCGTTTAACTCAACAGGGACGACAATGCTTGAAATGAGGATCGACTCTGGCACACCGAAAACATATATACCTCAAGATTTTTTTCACCGGGTGGCAACTCAGTTCATGAAGACATTTGATACACTTGATTCGAAATTGGATTCTTTCATTTCAGATGACGAGAAATATGATGAAAGTCACCTTTGCATCGAGGGTACGACGATTCCAAAAGAACCGAAAGTGGCTATTAATTTCAAGGGTGGTCAAAAATTGCAGTTCACGGGGGAACAAATATTTTTTCCAAACAAAGATTTAAACTTAACCTGCTTTGGAATGTCGAACACCACTTCACAGGACCTCACTGGTGACCATTATGGTATTTATGGAGGCAATATTCAGAGAAATTTCTTGATTGGTTTTGACCTAGATAAAAATGTGGTCTCCTTCAAGCCAACTAATTGCATAACCAATGGTGGTGGTGCTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

459

Amino Acids

50.56

Weight (kDa)

5.64

Isoelectric Point (pI)

29.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 89 - 267 2.5e-47 Xylanase inhibitor N-terminal
Asp PF00026 90 - 140 3e-08 Eukaryotic aspartyl protease
Asp PF00026 143 - 446 5e-10 Eukaryotic aspartyl protease
TAXi_C PF14541 289 - 447 2.6e-17 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 414
Acc16I TGCGCA 2 cut(s) 132, 627
Acc36I ACCTGC 2 cut(s) 495, 1223
AccI GTMKAC 1 cut(s) 196
AccII CGCG 1 cut(s) 858
AciI CCGC 1 cut(s) 858
AclWI GGATC 4 cut(s) 236, 482, 764, 959
AcoI YGGCCR 1 cut(s) 454
AcsI RAATTY 4 cut(s) 148, 447, 737, 1294
AcuI CTGAAG 1 cut(s) 109
AdeI CACNNNGTG 1 cut(s) 1003
AfaI GTAC 1 cut(s) 1108
AfiI CCNNNNNNNGG 1 cut(s) 725
AgsI TTSAA 4 cut(s) 154, 944, 1147, 1339
AluBI AGCT 2 cut(s) 227, 274
AluI AGCT 2 cut(s) 227, 274
Alw26I GTCTC 2 cut(s) 365, 1336
AlwI GGATC 4 cut(s) 236, 482, 764, 959
AoxI GGCC 2 cut(s) 291, 454
ApeKI GCWGC 4 cut(s) 5, 92, 95, 324
ApoI RAATTY 4 cut(s) 148, 447, 737, 1294
AseI ATTAAT 1 cut(s) 1140
AspA2I CCTAGG 1 cut(s) 758
AspLEI GCGC 2 cut(s) 133, 628
AspS9I GGNCC 2 cut(s) 209, 1246
AsuC2I CCSGG 2 cut(s) 290, 1001
AsuHPI GGTGA 5 cut(s) 449, 833, 989, 1082, 1268
AsuII TTCGAA 3 cut(s) 142, 462, 1043
AvaII GGWCC 2 cut(s) 209, 1246
AvrII CCTAGG 1 cut(s) 758
BbsI GAAGAC 1 cut(s) 1028
BbvI GCAGC 3 cut(s) 104, 107, 336
BccI CCATC 2 cut(s) 251, 467
BcgI CGANNNNNNTGC 4 cut(s) 122, 156, 433, 467
BcnI CCSGG 2 cut(s) 290, 1001
BcoDI GTCTC 2 cut(s) 365, 1336
BfaI CTAG 3 cut(s) 39, 759, 1316
BfmI CTRYAG 1 cut(s) 540
BfuAI ACCTGC 2 cut(s) 495, 1223
BisI GCNGC 4 cut(s) 6, 93, 96, 325
BlnI CCTAGG 1 cut(s) 758
BlsI GCNGC 4 cut(s) 7, 94, 97, 326
Bme1390I CCNGG 2 cut(s) 290, 1001
Bme18I GGWCC 2 cut(s) 209, 1246
BmgT120I GGNCC 2 cut(s) 209, 1246
BmiI GGNNCC 1 cut(s) 286
BmrFI CCNGG 2 cut(s) 290, 1001
BmsI GCATC 4 cut(s) 142, 754, 853, 1107
BpiI GAAGAC 1 cut(s) 1028
BpmI CTGGAG 1 cut(s) 747
Bpu14I TTCGAA 3 cut(s) 142, 462, 1043
BpuEI CTTGAG 1 cut(s) 969
BpuMI CCSGG 2 cut(s) 290, 1001
BsaBI GATNNNNATC 2 cut(s) 261, 768
BsaI GGTCTC 1 cut(s) 1336
BsaJI CCNNGG 2 cut(s) 288, 758
Bsc4I CCNNNNNNNGG 1 cut(s) 725
Bse1I ACTGG 2 cut(s) 457, 1258
Bse3DI GCAATG 3 cut(s) 164, 343, 842
Bse8I GATNNNNATC 2 cut(s) 261, 768
BseDI CCNNGG 2 cut(s) 288, 758
BseGI GGATG 3 cut(s) 424, 769, 868
BseJI GATNNNNATC 2 cut(s) 261, 768
BseLI CCNNNNNNNGG 1 cut(s) 725
BseMI GCAATG 3 cut(s) 164, 343, 842
BseMII CTCAG 1 cut(s) 1025
BseNI ACTGG 2 cut(s) 457, 1258
BseRI GAGGAG 1 cut(s) 699
BseXI GCAGC 3 cut(s) 104, 107, 336
Bsh1236I CGCG 1 cut(s) 858
BshFI GGCC 2 cut(s) 293, 456
BsiSI CCGG 2 cut(s) 290, 1000
BslFI GGGAC 1 cut(s) 943
BslI CCNNNNNNNGG 1 cut(s) 725
BsmAI GTCTC 2 cut(s) 365, 1336
BsmBI CGTCTC 1 cut(s) 365
BsmFI GGGAC 1 cut(s) 943
BsnI GGCC 2 cut(s) 293, 456
Bso31I GGTCTC 1 cut(s) 1336
Bsp119I TTCGAA 3 cut(s) 142, 462, 1043
Bsp143I GATC 6 cut(s) 241, 487, 769, 789, 873, 951
BspACI CCGC 1 cut(s) 858
BspANI GGCC 2 cut(s) 293, 456
BspCNI CTCAG 1 cut(s) 1024
BspFNI CGCG 1 cut(s) 858
BspHI TCATGA 1 cut(s) 1017
BspLI GGNNCC 1 cut(s) 286
BspMI ACCTGC 2 cut(s) 495, 1223
BspPI GGATC 4 cut(s) 236, 482, 764, 959
BspT104I TTCGAA 3 cut(s) 142, 462, 1043
BspTNI GGTCTC 1 cut(s) 1336
BsrDI GCAATG 3 cut(s) 164, 343, 842
BsrI ACTGG 2 cut(s) 457, 1258
BssECI CCNNGG 2 cut(s) 288, 758
BssMI GATC 6 cut(s) 241, 487, 769, 789, 873, 951
BssT1I CCWWGG 1 cut(s) 758
Bst4CI ACNGT 1 cut(s) 565
BstAPI GCANNNNNTGC 1 cut(s) 50
BstBI TTCGAA 3 cut(s) 142, 462, 1043
BstC8I GCNNGC 1 cut(s) 350
BstDEI CTNAG 1 cut(s) 1011
BstEII GGTNACC 1 cut(s) 1256
BstF5I GGATG 3 cut(s) 424, 769, 868
BstFNI CGCG 1 cut(s) 858
BstHHI GCGC 2 cut(s) 133, 628
BstKTI GATC 6 cut(s) 244, 490, 772, 792, 876, 954
BstMAI GTCTC 2 cut(s) 365, 1336
BstMBI GATC 6 cut(s) 241, 487, 769, 789, 873, 951
BstMWI GCNNNNNNNGC 2 cut(s) 50, 722
BstNSI RCATGY 1 cut(s) 388
BstPI GGTNACC 1 cut(s) 1256
BstSCI CCNGG 2 cut(s) 288, 999
BstSFI CTRYAG 1 cut(s) 540
BstUI CGCG 1 cut(s) 858
BstV1I GCAGC 3 cut(s) 104, 107, 336
BstV2I GAAGAC 1 cut(s) 1028
BstX2I RGATCY 1 cut(s) 487
BstXI CCANNNNNNTGG 1 cut(s) 191
BstYI RGATCY 1 cut(s) 487
BsuRI GGCC 2 cut(s) 293, 456
BtsCI GGATG 3 cut(s) 424, 769, 868
BtsIMutI CAGTG 2 cut(s) 133, 1251
BveI ACCTGC 2 cut(s) 495, 1223
Cac8I GCNNGC 1 cut(s) 350
CciI TCATGA 1 cut(s) 1017
CfoI GCGC 2 cut(s) 133, 628
Cfr13I GGNCC 2 cut(s) 209, 1246
Csp6I GTAC 1 cut(s) 1107
CspCI CAANNNNNGTGG 1 cut(s) 1348
CviAII CATG 4 cut(s) 354, 380, 385, 1018
CviQI GTAC 1 cut(s) 1107
DdeI CTNAG 1 cut(s) 1011
DpnI GATC 6 cut(s) 243, 489, 771, 791, 875, 953
DpnII GATC 6 cut(s) 241, 487, 769, 789, 873, 951
DraI TTTAAA 1 cut(s) 1206
DraIII CACNNNGTG 1 cut(s) 1003
EaeI YGGCCR 1 cut(s) 454
Eco130I CCWWGG 1 cut(s) 758
Eco31I GGTCTC 1 cut(s) 1336
Eco32I GATATC 1 cut(s) 301
Eco47I GGWCC 2 cut(s) 209, 1246
Eco57I CTGAAG 1 cut(s) 109
Eco91I GGTNACC 1 cut(s) 1256
EcoO109I RGGNCCY 1 cut(s) 1246
EcoO65I GGTNACC 1 cut(s) 1256
EcoRV GATATC 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 758
ErhI CCWWGG 1 cut(s) 758
Esp3I CGTCTC 1 cut(s) 365
FaeI CATG 4 cut(s) 357, 383, 388, 1021
FalI AAGNNNNNCTT 2 cut(s) 597, 629
FaqI GGGAC 1 cut(s) 943
FatI CATG 4 cut(s) 353, 379, 384, 1017
FauI CCCGC 1 cut(s) 851
FblI GTMKAC 1 cut(s) 196
Fnu4HI GCNGC 4 cut(s) 6, 93, 96, 325
FokI GGATG 3 cut(s) 431, 776, 875
Fsp4HI GCNGC 4 cut(s) 6, 93, 96, 325
FspAI RTGCGCAY 1 cut(s) 132
FspBI CTAG 3 cut(s) 39, 759, 1316
FspI TGCGCA 2 cut(s) 132, 627
GlaI GCGC 2 cut(s) 132, 627
GluI GCNGC 4 cut(s) 6, 93, 96, 325
GsuI CTGGAG 1 cut(s) 747
HaeIII GGCC 2 cut(s) 293, 456
HapII CCGG 2 cut(s) 290, 1000
HhaI GCGC 2 cut(s) 133, 628
Hin1II CATG 4 cut(s) 357, 383, 388, 1021
Hin6I GCGC 2 cut(s) 131, 626
HinP1I GCGC 2 cut(s) 131, 626
HincII GTYRAC 1 cut(s) 197
HindII GTYRAC 1 cut(s) 197
HinfI GANTC 5 cut(s) 851, 956, 1040, 1052, 1114
HpaII CCGG 2 cut(s) 290, 1000
HphI GGTGA 5 cut(s) 449, 833, 989, 1082, 1268
Hpy166II GTNNAC 3 cut(s) 197, 837, 1170
Hpy188I TCNGA 3 cut(s) 800, 1066, 1290
Hpy188III TCNNGA 5 cut(s) 212, 245, 986, 1018, 1300
Hpy8I GTNNAC 3 cut(s) 197, 837, 1170
Hpy99I CGWCG 2 cut(s) 201, 1114
HpyAV CCTTC 4 cut(s) 304, 818, 878, 1345
HpyCH4III ACNGT 1 cut(s) 565
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 8 cut(s) 169, 366, 444, 483, 504, 1098, 1165, 1353
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 722
HpyF3I CTNAG 1 cut(s) 1011
HpySE526I ACGT 1 cut(s) 199
Hsp92II CATG 4 cut(s) 357, 383, 388, 1021
HspAI GCGC 2 cut(s) 131, 626
Kzo9I GATC 6 cut(s) 241, 487, 769, 789, 873, 951
LmnI GCTCC 1 cut(s) 721
Lsp1109I GCAGC 3 cut(s) 104, 107, 336
LweI GCATC 4 cut(s) 142, 754, 853, 1107
MaeI CTAG 3 cut(s) 39, 759, 1316
MaeII ACGT 1 cut(s) 199
MaeIII GTNAC 4 cut(s) 565, 595, 1088, 1256
MalI GATC 6 cut(s) 243, 489, 771, 791, 875, 953
MboI GATC 6 cut(s) 241, 487, 769, 789, 873, 951
MboII GAAGA 1 cut(s) 1033
MfeI CAATTG 1 cut(s) 312
MflI RGATCY 1 cut(s) 487
MlyI GAGTC 1 cut(s) 950
MnlI CCTC 9 cut(s) 415, 677, 680, 722, 942, 993, 1096, 1259, 1271
MseI TTAA 6 cut(s) 572, 918, 1140, 1205, 1211, 1378
MspI CCGG 2 cut(s) 290, 1000
MspR9I CCNGG 2 cut(s) 290, 1001
MunI CAATTG 1 cut(s) 312
MvnI CGCG 1 cut(s) 858
MwoI GCNNNNNNNGC 2 cut(s) 50, 722
NciI CCSGG 2 cut(s) 290, 1001
NdeII GATC 6 cut(s) 241, 487, 769, 789, 873, 951
NlaIII CATG 4 cut(s) 357, 383, 388, 1021
NlaIV GGNNCC 1 cut(s) 286
NmeAIII GCCGAG 1 cut(s) 432
NmuCI GTSAC 2 cut(s) 1088, 1256
NsbI TGCGCA 2 cut(s) 132, 627
NspI RCATGY 1 cut(s) 388
NspV TTCGAA 3 cut(s) 142, 462, 1043
PagI TCATGA 1 cut(s) 1017
PcsI WCGNNNNNNNCGW 1 cut(s) 459
PfeI GAWTC 4 cut(s) 851, 1040, 1052, 1114
PkrI GCNGC 4 cut(s) 7, 94, 97, 326
PleI GAGTC 1 cut(s) 950
PpsI GAGTC 1 cut(s) 950
PpuMI RGGWCCY 1 cut(s) 1246
PshBI ATTAAT 1 cut(s) 1140
PsiI TTATAA 1 cut(s) 414
Psp5II RGGWCCY 1 cut(s) 1246
PspEI GGTNACC 1 cut(s) 1256
PspN4I GGNNCC 1 cut(s) 286
PspPI GGNCC 2 cut(s) 209, 1246
PspPPI RGGWCCY 1 cut(s) 1246
PsuI RGATCY 1 cut(s) 487
RsaI GTAC 1 cut(s) 1108
RsaNI GTAC 1 cut(s) 1107
SalI GTCGAC 1 cut(s) 195
SaqAI TTAA 6 cut(s) 572, 918, 1140, 1205, 1211, 1378
SatI GCNGC 4 cut(s) 6, 93, 96, 325
Sau3AI GATC 6 cut(s) 241, 487, 769, 789, 873, 951
Sau96I GGNCC 2 cut(s) 209, 1246
SchI GAGTC 1 cut(s) 950
ScrFI CCNGG 2 cut(s) 290, 1001
SfaNI GCATC 4 cut(s) 142, 754, 853, 1107
SfcI CTRYAG 1 cut(s) 540
SfuI TTCGAA 3 cut(s) 142, 462, 1043
SinI GGWCC 2 cut(s) 209, 1246
SmlI CTYRAG 1 cut(s) 984
SmoI CTYRAG 1 cut(s) 984
SsiI CCGC 1 cut(s) 858
SspI AATATT 2 cut(s) 1185, 1285
SspMI CTAG 3 cut(s) 39, 759, 1316
StyD4I CCNGG 2 cut(s) 288, 999
StyI CCWWGG 1 cut(s) 758
TaaI ACNGT 1 cut(s) 565
TaiI ACGT 1 cut(s) 202
TfiI GAWTC 4 cut(s) 851, 1040, 1052, 1114
Tru1I TTAA 6 cut(s) 572, 918, 1140, 1205, 1211, 1378
Tru9I TTAA 6 cut(s) 572, 918, 1140, 1205, 1211, 1378
TscAI CASTG 2 cut(s) 133, 1258
TseFI GTSAC 2 cut(s) 1088, 1256
TseI GCWGC 4 cut(s) 5, 92, 95, 324
Tsp45I GTSAC 2 cut(s) 1088, 1256
TspDTI ATGAA 7 cut(s) 56, 284, 675, 1006, 1034, 1048, 1098
TspGWI ACGGA 3 cut(s) 268, 668, 903
TspRI CASTG 2 cut(s) 133, 1258
VpaK11BI GGWCC 2 cut(s) 209, 1246
VspI ATTAAT 1 cut(s) 1140
XapI RAATTY 4 cut(s) 148, 447, 737, 1294
XceI RCATGY 1 cut(s) 388
XmaJI CCTAGG 1 cut(s) 758
XmiI GTMKAC 1 cut(s) 196
XspI CTAG 3 cut(s) 39, 759, 1316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.