Rorug01G0406800

Protein of unknown function (DUF819)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0017890
Physical Location & Seq
Reverse (-)
51338471 .. 51343765
5295 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0406800.1

Sequence Viewer

Length: 936 bp
ATGGTTTGTAGGGAGCTACTGTCAGCAACGTCTAGCACCACGTCGGCGACCGGTGGAACTCTCGCTAGGACCTCTGGTGATTATGCTGTTGGTATCAGCCACAACCCTGATAACGATACTTCCAGAATACGCAGGGATGGCAAAGCAAGACGTCCTGGGGATGCAAATTATGATCCAAGAACTCTGTATCTAGCTTCTGAGTTCTTAAAGAGTTTATCAGGTGGCCAGATACAAATGTGGGAGTTTAAGTCAAAGCACATGGACAAAGTTCTCTTTATCAAGGGCGAACAACCCCATTGTGGATTCCCAGAGAAGAACTTTTCAATGAATGTGGAGAAACTGGCTAGGAAGGTTGTGAAACGTGAAGAATGTGCAGTAGTTACAAAAGGAACAGTAACTGAGGGAGAGATGCTGTCTGCAAACCCTGATGCTTCTTATCTAATGGCAGTGACTGAAACCTCTCAAAATTTAGCAAACCAAAATTCCCCAAGCGTATTTTTGGAGTTTGTGTGGTTGATGTTGCTACCAGTAGGGTTATTCTTGGACAGCTGTTTGAGGACATATGTAATCATCAGAATTGTGATATTGCTACTCCTGTTTGCTGCTCATGATTCAGAGTGCAGTGCCTTGTCTTGTCTGTTGTCTGAATTGAGGCCTTTGGAACTAGTAGAACTTGTTGAACTACTTAGTCCTGAAAAAAACCGTGTTGATGATTCTCATATGGAAGAAGATGGCTTGGGCTGCTTGCCAGATGTGTTGTCTGAGCTGGTCGGAGCTGGGGAGAATGGCATCTGTGCACTTTCAGCTCTTGAAGATGCTCTTTTCTACTTAAAGCAAGTTTTTCTAGAAGTAGTGATTGCAGCAATTGTGAACAAAACTGTAATTATTGCAGTAAATTTCCTAGCTCCAAAGTTTGTGGACATCATGCTTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF819

Protein Analysis

311

Amino Acids

34.19

Weight (kDa)

5.03

Isoelectric Point (pI)

38.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24000
fragaria_vesca FvH4_7g30150
malus_domestica MD01G1207300.v1.1
pyrus_communis pycom01g21820
rosa_chinensis RchiOBHm_Chr1g0378181
rosa_laevigata RLG00000026464
rosa_multiflora Rmu_sc0000625.1_g000011
rosa_roxburghii Rroxscaffold_4G00280690
rosa_rugosa Rorug01G0406800
rosa_samantha Rh1BG385900
rosa_wichuraiana Rw1G037440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 154
AclWI GGATC 1 cut(s) 167
AcoI YGGCCR 1 cut(s) 223
AcsI RAATTY 3 cut(s) 466, 481, 895
AcyI GRCGYC 1 cut(s) 151
AfiI CCNNNNNNNGG 1 cut(s) 299
AgeI ACCGGT 1 cut(s) 50
AgsI TTSAA 3 cut(s) 324, 680, 812
AhlI ACTAGT 1 cut(s) 664
AjiI CACGTC 1 cut(s) 42
AjnI CCWGG 1 cut(s) 154
AluBI AGCT 7 cut(s) 16, 194, 549, 766, 776, 806, 905
AluI AGCT 7 cut(s) 16, 194, 549, 766, 776, 806, 905
Alw21I GWGCWC 1 cut(s) 799
Alw44I GTGCAC 1 cut(s) 795
AlwI GGATC 1 cut(s) 167
AlwNI CAGNNNCTG 2 cut(s) 398, 452
AoxI GGCC 2 cut(s) 223, 653
ApaLI GTGCAC 1 cut(s) 795
ApeKI GCWGC 3 cut(s) 602, 741, 860
ApoI RAATTY 3 cut(s) 466, 481, 895
AsiGI ACCGGT 1 cut(s) 50
AspS9I GGNCC 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 89
AvaII GGWCC 1 cut(s) 69
BaeGI GKGCMC 1 cut(s) 799
BaeI ACNNNNGTAYC 2 cut(s) 221, 254
BalI TGGCCA 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 799
BbvI GCAGC 3 cut(s) 589, 728, 872
BccI CCATC 2 cut(s) 131, 725
BciT130I CCWGG 1 cut(s) 156
BcuI ACTAGT 1 cut(s) 664
BfaI CTAG 7 cut(s) 33, 66, 191, 345, 665, 845, 902
BisI GCNGC 3 cut(s) 603, 742, 861
BlsI GCNGC 3 cut(s) 604, 743, 862
Bme1390I CCNGG 1 cut(s) 156
Bme18I GGWCC 1 cut(s) 69
BmgBI CACGTC 1 cut(s) 42
BmgT120I GGNCC 1 cut(s) 69
BmrFI CCNGG 1 cut(s) 156
BmsI GCATC 5 cut(s) 151, 399, 418, 798, 805
BsaHI GRCGYC 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 155
BsaWI WCCGGW 1 cut(s) 50
BsaXI ACNNNNNCTCC 6 cut(s) 5, 35, 233, 263, 494, 524
Bsc4I CCNNNNNNNGG 1 cut(s) 299
Bse118I RCCGGY 1 cut(s) 50
Bse1I ACTGG 2 cut(s) 345, 527
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 155
BseGI GGATG 2 cut(s) 142, 166
BseLI CCNNNNNNNGG 1 cut(s) 299
BseMII CTCAG 3 cut(s) 189, 390, 753
BseNI ACTGG 2 cut(s) 345, 527
BseSI GKGCMC 1 cut(s) 799
BseXI GCAGC 3 cut(s) 589, 728, 872
BseYI CCCAGC 1 cut(s) 776
BsgI GTGCAG 2 cut(s) 393, 640
Bsh1285I CGRYCG 1 cut(s) 51
BshFI GGCC 2 cut(s) 225, 655
BshTI ACCGGT 1 cut(s) 50
BsiEI CGRYCG 1 cut(s) 51
BsiHKAI GWGCWC 1 cut(s) 799
BsiSI CCGG 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 299
BsnI GGCC 2 cut(s) 225, 655
Bsp1286I GDGCHC 1 cut(s) 799
Bsp143I GATC 1 cut(s) 172
BspANI GGCC 2 cut(s) 225, 655
BspCNI CTCAG 3 cut(s) 190, 391, 754
BspHI TCATGA 1 cut(s) 607
BspPI GGATC 1 cut(s) 167
BsrFI RCCGGY 1 cut(s) 50
BsrI ACTGG 2 cut(s) 345, 527
BssAI RCCGGY 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 155
BssMI GATC 1 cut(s) 172
BssNI GRCGYC 1 cut(s) 151
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 4 cut(s) 21, 394, 704, 880
BstACI GRCGYC 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 746
BstDEI CTNAG 4 cut(s) 198, 399, 686, 762
BstF5I GGATG 2 cut(s) 142, 166
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstMCI CGRYCG 1 cut(s) 51
BstMWI GCNNNNNNNGC 3 cut(s) 138, 741, 803
BstNI CCWGG 1 cut(s) 156
BstSCI CCNGG 1 cut(s) 154
BstSLI GKGCMC 1 cut(s) 799
BstV1I GCAGC 3 cut(s) 589, 728, 872
BsuRI GGCC 2 cut(s) 225, 655
BtrI CACGTC 1 cut(s) 42
BtsCI GGATG 2 cut(s) 142, 166
BtsI GCAGTG 2 cut(s) 453, 628
BtsIMutI CAGTG 2 cut(s) 453, 628
Cac8I GCNNGC 1 cut(s) 746
CaiI CAGNNNCTG 2 cut(s) 398, 452
CciI TCATGA 1 cut(s) 607
Cfr10I RCCGGY 1 cut(s) 50
Cfr13I GGNCC 1 cut(s) 69
CspAI ACCGGT 1 cut(s) 50
CspCI CAANNNNNGTGG 4 cut(s) 312, 347, 897, 932
CviAII CATG 3 cut(s) 259, 608, 925
DdeI CTNAG 4 cut(s) 198, 399, 686, 762
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 223
Eco147I AGGCCT 1 cut(s) 655
Eco47I GGWCC 1 cut(s) 69
EcoO109I RGGNCCY 1 cut(s) 69
EcoRII CCWGG 1 cut(s) 154
FaeI CATG 3 cut(s) 262, 611, 928
FaiI YATR 9 cut(s) 84, 171, 260, 562, 564, 609, 720, 722, 926
FalI AAGNNNNNCTT 2 cut(s) 804, 836
FatI CATG 3 cut(s) 258, 607, 924
FauNDI CATATG 2 cut(s) 562, 720
Fnu4HI GCNGC 3 cut(s) 603, 742, 861
FokI GGATG 2 cut(s) 149, 173
Fsp4HI GCNGC 3 cut(s) 603, 742, 861
FspBI CTAG 7 cut(s) 33, 66, 191, 345, 665, 845, 902
GluI GCNGC 3 cut(s) 603, 742, 861
GsaI CCCAGC 1 cut(s) 780
HaeIII GGCC 2 cut(s) 225, 655
HapII CCGG 1 cut(s) 51
Hin1I GRCGYC 1 cut(s) 151
Hin1II CATG 3 cut(s) 262, 611, 928
HinfI GANTC 3 cut(s) 303, 611, 713
HpaII CCGG 1 cut(s) 51
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 3 cut(s) 797, 871, 919
Hpy188I TCNGA 6 cut(s) 199, 575, 616, 646, 763, 773
Hpy188III TCNNGA 5 cut(s) 123, 608, 692, 809, 845
Hpy8I GTNNAC 3 cut(s) 797, 871, 919
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 343
HpyCH4III ACNGT 4 cut(s) 21, 394, 704, 880
HpyCH4IV ACGT 4 cut(s) 29, 41, 151, 361
HpyCH4V TGCA 7 cut(s) 164, 374, 419, 621, 797, 860, 890
HpyF10VI GCNNNNNNNGC 3 cut(s) 138, 741, 803
HpyF3I CTNAG 4 cut(s) 198, 399, 686, 762
HpySE526I ACGT 4 cut(s) 29, 41, 151, 361
Hsp92I GRCGYC 1 cut(s) 151
Hsp92II CATG 3 cut(s) 262, 611, 928
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 3 cut(s) 13, 773, 910
Lsp1109I GCAGC 3 cut(s) 589, 728, 872
LweI GCATC 5 cut(s) 151, 399, 418, 798, 805
MaeI CTAG 7 cut(s) 33, 66, 191, 345, 665, 845, 902
MaeII ACGT 4 cut(s) 29, 41, 151, 361
MaeIII GTNAC 3 cut(s) 379, 394, 448
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 5 cut(s) 325, 377, 737, 740, 824
MfeI CAATTG 1 cut(s) 864
MhlI GDGCHC 1 cut(s) 799
MlsI TGGCCA 1 cut(s) 225
MluCI AATT 8 cut(s) 166, 466, 481, 576, 647, 864, 882, 895
MluNI TGGCCA 1 cut(s) 225
MmeI TCCRAC 1 cut(s) 751
MnlI CCTC 5 cut(s) 82, 394, 469, 549, 645
Mox20I TGGCCA 1 cut(s) 225
MscI TGGCCA 1 cut(s) 225
MseI TTAA 3 cut(s) 206, 246, 830
Msp20I TGGCCA 1 cut(s) 225
MspA1I CMGCKG 1 cut(s) 549
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 156
MunI CAATTG 1 cut(s) 864
MvaI CCWGG 1 cut(s) 156
MwoI GCNNNNNNNGC 3 cut(s) 138, 741, 803
NdeI CATATG 2 cut(s) 562, 720
NdeII GATC 1 cut(s) 172
NlaIII CATG 3 cut(s) 262, 611, 928
NmuCI GTSAC 1 cut(s) 448
PagI TCATGA 1 cut(s) 607
PceI AGGCCT 1 cut(s) 655
PfeI GAWTC 3 cut(s) 303, 611, 713
PinAI ACCGGT 1 cut(s) 50
PkrI GCNGC 3 cut(s) 604, 743, 862
PpuMI RGGWCCY 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 154
PspFI CCCAGC 1 cut(s) 776
PspGI CCWGG 1 cut(s) 154
PspPI GGNCC 1 cut(s) 69
PspPPI RGGWCCY 1 cut(s) 69
PstNI CAGNNNCTG 2 cut(s) 398, 452
PvuII CAGCTG 1 cut(s) 549
SaqAI TTAA 3 cut(s) 206, 246, 830
SatI GCNGC 3 cut(s) 603, 742, 861
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 1 cut(s) 69
ScrFI CCNGG 1 cut(s) 156
SduI GDGCHC 1 cut(s) 799
SfaNI GCATC 5 cut(s) 151, 399, 418, 798, 805
SinI GGWCC 1 cut(s) 69
SpeI ACTAGT 1 cut(s) 664
Sse9I AATT 8 cut(s) 166, 466, 481, 576, 647, 864, 882, 895
SseBI AGGCCT 1 cut(s) 655
SspMI CTAG 7 cut(s) 33, 66, 191, 345, 665, 845, 902
StuI AGGCCT 1 cut(s) 655
StyD4I CCNGG 1 cut(s) 154
TaaI ACNGT 4 cut(s) 21, 394, 704, 880
TaiI ACGT 4 cut(s) 32, 44, 154, 364
TasI AATT 8 cut(s) 166, 466, 481, 576, 647, 864, 882, 895
TfiI GAWTC 3 cut(s) 303, 611, 713
Tru1I TTAA 3 cut(s) 206, 246, 830
Tru9I TTAA 3 cut(s) 206, 246, 830
TscAI CASTG 2 cut(s) 453, 628
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 3 cut(s) 602, 741, 860
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 1 cut(s) 341
TspRI CASTG 2 cut(s) 453, 628
VneI GTGCAC 1 cut(s) 795
VpaK11BI GGWCC 1 cut(s) 69
XapI RAATTY 3 cut(s) 466, 481, 895
XbaI TCTAGA 1 cut(s) 844
XspI CTAG 7 cut(s) 33, 66, 191, 345, 665, 845, 902
ZraI GACGTC 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.