Rorug02G0033500

Ectonucleotide pyrophosphatase phosphodiesterase family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006656
Physical Location & Seq
Reverse (-)
2628316 .. 2629289
974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0033500.1

Sequence Viewer

Length: 936 bp
ATGAACTTGCTTCATGTTTGGAGAGCTTGTCTGGATATCCTTCCTTCGCTAGATAGCTTGGCCTCGAAGCGAGTGGTTTTGGAGTCGAATTTTTGTGTTTTATGTGAGTCTCATACTGAAACGACGATCCACCTTTGTCGGGATTGCCCTTATACTAGGAGGGTGCTTCATACAAATGCTATGCTGCAACATGTATGCTACAATCCGAATAATATGCTTGGTGATGTTATTAGTTGGTTGAGTCAGTGTGCGAATGAATTATCGCTCATACATTTTGGAGAACTTTTATTCTCGTTATGGGGAATTTGGAAAGAAAGAAATGATCGGGTTTGGAATCAAAAGAGGTGTGAGGCCAGGGATGTGAGTTTGGGGATTGTCTCTAGGCTGCAAGAATTCAGGGTTCACAATTTGAAACCCTACCAACCTAAGGTTAAACGTGGAGCAGTGTGGAAAGCTCCTCCTGTGGGGGTGGTAAAGGTCAATGTTGATGGGGCATTCCATCACGCTTCCAGGAAGGGTGGTTTGGGTTTTGTTTTCAGAAATGAGAATGGAATAATGCTGGGTGGTGGCGCCTGGCCCTTGAGCGGGTTGAATTCCCCAGAACATGCTGAAATTTTGGCATGCAAGGTTGCTTTAGAGTTTGCGGAGGTTCATGGTTTTGGACCCGTTCTTCTAGAGACTGATGCTTTGGAGGTTCAACGTCAACTTTCTTTGCATGACTCTGTCAATTTATCAGGGCTAGGCAGAATATATGATGATGTTGTGGCTCTCTTGGAGGCTCAGAGTGTTATCCAGGTGACTCATGTAGGTAGGAAAGGTAACGGGGTAGCACATTTGTTGGCTAACCATGCTTGTTCTATTAGACAGAATGTTTTTTATTTTTCAACTCCAGAATTTTTACAAGCTGCAATTGCAGCTGACCTTTGTACTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002276 GO:0002366 GO:0002376 GO:0002682 GO:0002683 GO:0002684 GO:0002694 GO:0002695 GO:0002697 GO:0002698 GO:0002699 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004528 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006163 GO:0006220 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006955 GO:0008081 GO:0008150 GO:0008152 GO:0008270 GO:0008285 GO:0009056 GO:0009058 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009143 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009897 GO:0009986 GO:0009987 GO:0016020 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0017144 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0033003 GO:0033004 GO:0033006 GO:0033007 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0036230 GO:0042127 GO:0042578 GO:0043167 GO:0043169 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0045321 GO:0045575 GO:0046034 GO:0046434 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0047429 GO:0048471 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050727 GO:0050728 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050865 GO:0050866 GO:0050896 GO:0055086 GO:0065007 GO:0070663 GO:0070664 GO:0070666 GO:0070667 GO:0071704 GO:0071944 GO:0072521 GO:0072527 GO:0080134 GO:0090304 GO:0090305 GO:0098552 GO:1901135 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko00500 ko00740 ko00760 ko00770 ko01100 map00230 map00240 map00500 map00740 map00760 map00770 map01100
Pfam Domains
Protein Families
Phosphodiest

Protein Analysis

311

Amino Acids

34.62

Weight (kDa)

7.23

Isoelectric Point (pI)

36.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 161 - 284 1.6e-24 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 569
AccBSI CCGCTC 1 cut(s) 585
AciI CCGC 2 cut(s) 585, 644
AclWI GGATC 1 cut(s) 121
AcsI RAATTY 6 cut(s) 88, 303, 392, 592, 612, 893
AcyI GRCGYC 1 cut(s) 570
AfaI GTAC 1 cut(s) 928
AfiI CCNNNNNNNGG 5 cut(s) 139, 427, 464, 584, 585
AflIII ACRYGT 1 cut(s) 190
AgsI TTSAA 4 cut(s) 412, 592, 698, 885
AjnI CCWGG 4 cut(s) 353, 509, 572, 792
AjuI GAANNNNNNNTTGG 2 cut(s) 506, 538
AluBI AGCT 5 cut(s) 26, 57, 455, 905, 917
AluI AGCT 5 cut(s) 26, 57, 455, 905, 917
Alw26I GTCTC 3 cut(s) 114, 382, 671
AlwI GGATC 1 cut(s) 121
AoxI GGCC 3 cut(s) 60, 351, 575
ApeKI GCWGC 4 cut(s) 184, 385, 905, 914
ApoI RAATTY 6 cut(s) 88, 303, 392, 592, 612, 893
ArsI GACNNNNNNTTYG 2 cut(s) 670, 702
AspLEI GCGC 1 cut(s) 572
AspS9I GGNCC 2 cut(s) 576, 662
AsuHPI GGTGA 2 cut(s) 233, 808
AvaII GGWCC 1 cut(s) 662
AxyI CCTNAGG 1 cut(s) 426
BanI GGYRCC 1 cut(s) 569
BbvI GCAGC 4 cut(s) 171, 372, 892, 926
BccI CCATC 2 cut(s) 482, 507
BcgI CGANNNNNNTGC 2 cut(s) 196, 230
BciT130I CCWGG 4 cut(s) 355, 511, 574, 794
BcoDI GTCTC 3 cut(s) 114, 382, 671
BfaI CTAG 5 cut(s) 50, 156, 381, 674, 740
BfoI RGCGCY 1 cut(s) 573
BisI GCNGC 4 cut(s) 185, 386, 906, 915
BlsI GCNGC 4 cut(s) 186, 387, 907, 916
Bme1390I CCNGG 4 cut(s) 355, 511, 574, 794
Bme18I GGWCC 1 cut(s) 662
BmgT120I GGNCC 2 cut(s) 576, 662
BmiI GGNNCC 2 cut(s) 571, 664
BmrFI CCNGG 4 cut(s) 355, 511, 574, 794
BmsI GCATC 1 cut(s) 673
BpmI CTGGAG 1 cut(s) 873
BpuEI CTTGAG 1 cut(s) 601
BsaHI GRCGYC 1 cut(s) 570
BsaJI CCNNGG 1 cut(s) 354
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 5 cut(s) 139, 427, 464, 584, 585
Bse21I CCTNAGG 1 cut(s) 426
BseBI CCWGG 4 cut(s) 355, 511, 574, 794
BseDI CCNNGG 1 cut(s) 354
BseGI GGATG 1 cut(s) 364
BseLI CCNNNNNNNGG 5 cut(s) 139, 427, 464, 584, 585
BseMII CTCAG 1 cut(s) 794
BseRI GAGGAG 1 cut(s) 447
BseXI GCAGC 4 cut(s) 171, 372, 892, 926
BseYI CCCAGC 1 cut(s) 559
BshFI GGCC 3 cut(s) 62, 353, 577
BshNI GGYRCC 1 cut(s) 569
BslI CCNNNNNNNGG 5 cut(s) 139, 427, 464, 584, 585
BsmAI GTCTC 3 cut(s) 114, 382, 671
BsmI GAATGC 1 cut(s) 494
BsnI GGCC 3 cut(s) 62, 353, 577
Bsp143I GATC 2 cut(s) 126, 322
BspACI CCGC 2 cut(s) 585, 644
BspANI GGCC 3 cut(s) 62, 353, 577
BspCNI CTCAG 1 cut(s) 793
BspLI GGNNCC 2 cut(s) 571, 664
BspPI GGATC 1 cut(s) 121
BspT107I GGYRCC 1 cut(s) 569
BsrBI CCGCTC 1 cut(s) 585
BssECI CCNNGG 1 cut(s) 354
BssMI GATC 2 cut(s) 126, 322
BssNI GRCGYC 1 cut(s) 570
Bst2UI CCWGG 4 cut(s) 355, 511, 574, 794
Bst4CI ACNGT 1 cut(s) 931
BstACI GRCGYC 1 cut(s) 570
BstC8I GCNNGC 1 cut(s) 622
BstDEI CTNAG 2 cut(s) 426, 780
BstF5I GGATG 1 cut(s) 364
BstH2I RGCGCY 1 cut(s) 573
BstHHI GCGC 1 cut(s) 572
BstKTI GATC 2 cut(s) 129, 325
BstMAI GTCTC 3 cut(s) 114, 382, 671
BstMBI GATC 2 cut(s) 126, 322
BstMWI GCNNNNNNNGC 3 cut(s) 848, 911, 914
BstNI CCWGG 4 cut(s) 355, 511, 574, 794
BstNSI RCATGY 3 cut(s) 194, 608, 624
BstSCI CCNGG 4 cut(s) 353, 509, 572, 792
BstV1I GCAGC 4 cut(s) 171, 372, 892, 926
Bsu36I CCTNAGG 1 cut(s) 426
BsuRI GGCC 3 cut(s) 62, 353, 577
BtsCI GGATG 1 cut(s) 364
BtsI GCAGTG 1 cut(s) 450
BtsIMutI CAGTG 2 cut(s) 251, 450
Cac8I GCNNGC 1 cut(s) 622
CfoI GCGC 1 cut(s) 572
Cfr13I GGNCC 2 cut(s) 576, 662
Csp6I GTAC 1 cut(s) 927
CviAII CATG 8 cut(s) 14, 191, 605, 621, 653, 716, 803, 848
CviQI GTAC 1 cut(s) 927
DdeI CTNAG 2 cut(s) 426, 780
DinI GGCGCC 1 cut(s) 571
DpnI GATC 2 cut(s) 128, 324
DpnII GATC 2 cut(s) 126, 322
Eco32I GATATC 1 cut(s) 37
Eco47I GGWCC 1 cut(s) 662
Eco81I CCTNAGG 1 cut(s) 426
EcoRI GAATTC 2 cut(s) 392, 592
EcoRII CCWGG 4 cut(s) 353, 509, 572, 792
EcoRV GATATC 1 cut(s) 37
EgeI GGCGCC 1 cut(s) 571
EheI GGCGCC 1 cut(s) 571
FaeI CATG 8 cut(s) 17, 194, 608, 624, 656, 719, 806, 851
FatI CATG 8 cut(s) 13, 190, 604, 620, 652, 715, 802, 847
FauI CCCGC 1 cut(s) 578
Fnu4HI GCNGC 4 cut(s) 185, 386, 906, 915
FokI GGATG 1 cut(s) 371
Fsp4HI GCNGC 4 cut(s) 185, 386, 906, 915
FspBI CTAG 5 cut(s) 50, 156, 381, 674, 740
GlaI GCGC 1 cut(s) 571
GluI GCNGC 4 cut(s) 185, 386, 906, 915
GsaI CCCAGC 1 cut(s) 563
GsuI CTGGAG 1 cut(s) 873
HaeII RGCGCY 1 cut(s) 573
HaeIII GGCC 3 cut(s) 62, 353, 577
HhaI GCGC 1 cut(s) 572
Hin1I GRCGYC 1 cut(s) 570
Hin1II CATG 8 cut(s) 17, 194, 608, 624, 656, 719, 806, 851
Hin6I GCGC 1 cut(s) 570
HinP1I GCGC 1 cut(s) 570
HincII GTYRAC 1 cut(s) 704
HindII GTYRAC 1 cut(s) 704
HinfI GANTC 6 cut(s) 83, 107, 241, 334, 719, 799
HphI GGTGA 2 cut(s) 233, 808
Hpy166II GTNNAC 2 cut(s) 403, 704
Hpy188I TCNGA 3 cut(s) 207, 539, 783
Hpy188III TCNNGA 4 cut(s) 32, 140, 674, 890
Hpy8I GTNNAC 2 cut(s) 403, 704
Hpy99I CGWCG 1 cut(s) 127
HpyAV CCTTC 3 cut(s) 50, 54, 508
HpyCH4III ACNGT 1 cut(s) 931
HpyCH4IV ACGT 2 cut(s) 436, 700
HpyCH4V TGCA 6 cut(s) 187, 388, 624, 715, 908, 914
HpyF10VI GCNNNNNNNGC 3 cut(s) 848, 911, 914
HpyF3I CTNAG 2 cut(s) 426, 780
HpySE526I ACGT 2 cut(s) 436, 700
Hsp92I GRCGYC 1 cut(s) 570
Hsp92II CATG 8 cut(s) 17, 194, 608, 624, 656, 719, 806, 851
HspAI GCGC 1 cut(s) 570
KasI GGCGCC 1 cut(s) 569
Kzo9I GATC 2 cut(s) 126, 322
LmnI GCTCC 2 cut(s) 440, 460
Lsp1109I GCAGC 4 cut(s) 171, 372, 892, 926
LweI GCATC 1 cut(s) 673
MaeI CTAG 5 cut(s) 50, 156, 381, 674, 740
MaeII ACGT 2 cut(s) 436, 700
MaeIII GTNAC 2 cut(s) 796, 818
MalI GATC 2 cut(s) 128, 324
MbiI CCGCTC 1 cut(s) 585
MboI GATC 2 cut(s) 126, 322
MboII GAAGA 1 cut(s) 662
MfeI CAATTG 1 cut(s) 909
Mly113I GGCGCC 1 cut(s) 570
MlyI GAGTC 5 cut(s) 92, 116, 250, 713, 793
MnlI CCTC 8 cut(s) 73, 153, 336, 343, 468, 640, 685, 769
MseI TTAA 1 cut(s) 432
MslI CAYNNNNRTG 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 917
MspR9I CCNGG 4 cut(s) 355, 511, 574, 794
MunI CAATTG 1 cut(s) 909
Mva1269I GAATGC 1 cut(s) 494
MvaI CCWGG 4 cut(s) 355, 511, 574, 794
MwoI GCNNNNNNNGC 3 cut(s) 848, 911, 914
NarI GGCGCC 1 cut(s) 570
NdeII GATC 2 cut(s) 126, 322
NlaIII CATG 8 cut(s) 17, 194, 608, 624, 656, 719, 806, 851
NlaIV GGNNCC 2 cut(s) 571, 664
NmuCI GTSAC 1 cut(s) 796
NspI RCATGY 3 cut(s) 194, 608, 624
PaeI GCATGC 1 cut(s) 624
PciI ACATGT 1 cut(s) 190
PctI GAATGC 1 cut(s) 494
PfeI GAWTC 1 cut(s) 334
PflFI GACNNNGTC 1 cut(s) 722
PfoI TCCNGGA 1 cut(s) 509
PkrI GCNGC 4 cut(s) 186, 387, 907, 916
PleI GAGTC 5 cut(s) 91, 115, 249, 713, 793
PluTI GGCGCC 1 cut(s) 573
PpsI GAGTC 5 cut(s) 91, 115, 249, 713, 793
PscI ACATGT 1 cut(s) 190
Psp6I CCWGG 4 cut(s) 353, 509, 572, 792
PspFI CCCAGC 1 cut(s) 559
PspGI CCWGG 4 cut(s) 353, 509, 572, 792
PspN4I GGNNCC 2 cut(s) 571, 664
PspPI GGNCC 2 cut(s) 576, 662
PsyI GACNNNGTC 1 cut(s) 722
PvuII CAGCTG 1 cut(s) 917
RsaI GTAC 1 cut(s) 928
RsaNI GTAC 1 cut(s) 927
RseI CAYNNNNRTG 1 cut(s) 174
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 4 cut(s) 185, 386, 906, 915
Sau3AI GATC 2 cut(s) 126, 322
Sau96I GGNCC 2 cut(s) 576, 662
SchI GAGTC 5 cut(s) 92, 116, 250, 713, 793
ScrFI CCNGG 4 cut(s) 355, 511, 574, 794
SfaNI GCATC 1 cut(s) 673
SfoI GGCGCC 1 cut(s) 571
SinI GGWCC 1 cut(s) 662
SmiMI CAYNNNNRTG 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 580
SmoI CTYRAG 1 cut(s) 580
SphI GCATGC 1 cut(s) 624
SsiI CCGC 2 cut(s) 585, 644
SspDI GGCGCC 1 cut(s) 569
SspMI CTAG 5 cut(s) 50, 156, 381, 674, 740
StyD4I CCNGG 4 cut(s) 353, 509, 572, 792
TaaI ACNGT 1 cut(s) 931
TaiI ACGT 2 cut(s) 439, 703
TaqI TCGA 2 cut(s) 65, 86
TatI WGTACW 1 cut(s) 926
TfiI GAWTC 1 cut(s) 334
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 2 cut(s) 251, 450
TseFI GTSAC 1 cut(s) 796
TseI GCWGC 4 cut(s) 184, 385, 905, 914
Tsp45I GTSAC 1 cut(s) 796
TspDTI ATGAA 4 cut(s) 17, 158, 270, 641
TspRI CASTG 2 cut(s) 251, 450
Tth111I GACNNNGTC 1 cut(s) 722
VpaK11BI GGWCC 1 cut(s) 662
XapI RAATTY 6 cut(s) 88, 303, 392, 592, 612, 893
XbaI TCTAGA 1 cut(s) 673
XceI RCATGY 3 cut(s) 194, 608, 624
XspI CTAG 5 cut(s) 50, 156, 381, 674, 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.